© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6549.t1 |
| Gene name | |
| Location | scaffold_17:495936..496269 |
| Strand | + |
| Gene length (bp) | 333 |
| Transcript length (bp) | 270 |
| Coding sequence length (bp) | 270 |
| Protein length (aa) | 90 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF16211 | Histone_H2A_C | C-terminus of histone H2A | 5.5E-12 | 51 | 83 |
| PF00125 | Histone | Core histone H2A/H2B/H3/H4 | 9.8E-11 | 2 | 49 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003677 | DNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 761.88 | 442.50 | 1081.26 |
| 5d_25C | Five days - 25 degrees Celsius | 873.18 | 519.86 | 1226.50 |
| 7d_25C | Seven days - 25 degrees Celsius | 973.34 | 583.79 | 1362.88 |
| 10d_25C | Ten days - 25 degrees Celsius | 1038.30 | 626.68 | 1449.92 |
| 7d_15C | Seven days - 15 degrees Celsius | 965.80 | 570.56 | 1361.03 |
| 7d_30C | Seven days - 30 degrees Celsius | 897.22 | 536.81 | 1257.63 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.631891 | no |
| 3d_25C | 7d_25C | 0.325768 | no |
| 3d_25C | 7d_15C | 0.354835 | no |
| 3d_25C | 7d_30C | 0.552290 | no |
| 3d_25C | 10d_25C | 0.178667 | no |
| 5d_25C | 7d_25C | 0.709791 | no |
| 5d_25C | 7d_15C | 0.735483 | no |
| 5d_25C | 7d_30C | 0.936891 | no |
| 5d_25C | 10d_25C | 0.499545 | no |
| 7d_25C | 7d_15C | 0.983041 | no |
| 7d_25C | 7d_30C | 0.790995 | no |
| 7d_25C | 10d_25C | 0.837840 | no |
| 7d_15C | 7d_30C | 0.814309 | no |
| 7d_15C | 10d_25C | 0.815008 | no |
| 7d_30C | 10d_25C | 0.583765 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6549.t1 MRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPRINRALL LKVEQKKKGGKIEL* |
| Coding | >Pro_DTO377G3_2|g6549.t1 ATGCGTGTCGGTGCTAAGGCCGCTGTCTACGTGACCGCTGTTCTTGAGTACCTGACTGCCGAAGTTCTCGAACTG GCCGGTAATGCCGCCAAGGATCTCAAAGTCAAGCGTATCACTCCTCGCCACCTCCAGCTCGCCATCCGTGGTGAT GAAGAACTGGACACCCTCATCCGCGCAACCATCGCCTTCGGTGGTGTCCTTCCCCGCATCAACCGTGCACTGCTC CTGAAGGTCGAGCAAAAGAAGAAGGGTGGCAAGATCGAGCTCTAA |
| Transcript | >Pro_DTO377G3_2|g6549.t1 ATGCGTGTCGGTGCTAAGGCCGCTGTCTACGTGACCGCTGTTCTTGAGTACCTGACTGCCGAAGTTCTCGAACTG GCCGGTAATGCCGCCAAGGATCTCAAAGTCAAGCGTATCACTCCTCGCCACCTCCAGCTCGCCATCCGTGGTGAT GAAGAACTGGACACCCTCATCCGCGCAACCATCGCCTTCGGTGGTGTCCTTCCCCGCATCAACCGTGCACTGCTC CTGAAGGTCGAGCAAAAGAAGAAGGGTGGCAAGATCGAGCTCTAA |
| Gene | >Pro_DTO377G3_2|g6549.t1 ATGCGTGTCGGTGCTAAGGGTATGCTATGTCGCTTGGACGGATCTCCGACGTGACCTGTCGCTAACACTTTTTCC CACCTAGCCGCTGTCTACGTGACCGCTGTTCTTGAGTACCTGACTGCCGAAGTTCTCGAACTGGCCGGTAATGCC GCCAAGGATCTCAAAGTCAAGCGTATCACTCCTCGCCACCTCCAGCTCGCCATCCGTGGTGATGAAGAACTGGAC ACCCTCATCCGCGCAACCATCGCCTTCGGTGGTGTCCTTCCCCGCATCAACCGTGCACTGCTCCTGAAGGTCGAG CAAAAGAAGAAGGGTGGCAAGATCGAGCTCTAA |