© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6542.t1 |
| Gene name | |
| Location | scaffold_17:477909..478977 |
| Strand | - |
| Gene length (bp) | 1068 |
| Transcript length (bp) | 885 |
| Coding sequence length (bp) | 885 |
| Protein length (aa) | 295 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01764 | Lipase_3 | Lipase (class 3) | 1.5E-36 | 104 | 234 |
| PF03893 | Lipase3_N | Lipase 3 N-terminal region | 2.3E-07 | 9 | 78 |
| PF06259 | Abhydrolase_8 | Alpha/beta hydrolase | 1.9E-04 | 146 | 233 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006629 | lipid metabolic process | Yes |
| GO:0016042 | lipid catabolic process | Yes |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0009056 | catabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 34.80 | 17.31 | 52.30 |
| 5d_25C | Five days - 25 degrees Celsius | 27.26 | 12.76 | 41.75 |
| 7d_25C | Seven days - 25 degrees Celsius | 24.05 | 10.73 | 37.36 |
| 10d_25C | Ten days - 25 degrees Celsius | 21.39 | 9.48 | 33.31 |
| 7d_15C | Seven days - 15 degrees Celsius | 27.28 | 11.62 | 42.95 |
| 7d_30C | Seven days - 30 degrees Celsius | 37.56 | 19.12 | 56.01 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.461015 | no |
| 3d_25C | 7d_25C | 0.233440 | no |
| 3d_25C | 7d_15C | 0.489406 | no |
| 3d_25C | 7d_30C | 0.849581 | no |
| 3d_25C | 10d_25C | 0.097023 | no |
| 5d_25C | 7d_25C | 0.763961 | no |
| 5d_25C | 7d_15C | 0.998245 | no |
| 5d_25C | 7d_30C | 0.304669 | no |
| 5d_25C | 10d_25C | 0.503261 | no |
| 7d_25C | 7d_15C | 0.770982 | no |
| 7d_25C | 7d_30C | 0.136321 | no |
| 7d_25C | 10d_25C | 0.788155 | no |
| 7d_15C | 7d_30C | 0.317104 | no |
| 7d_15C | 10d_25C | 0.510774 | no |
| 7d_30C | 10d_25C | 0.047513 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6542.t1 MLLLGRLWSIAALAALTVAAPSRSVPRDVSADVLGQLTLFSQWAAASYCTNNSNSTGDGVSCEQGNCPLVESADT TTLYEFDETSSYGDVAGFLAVDKTNKLLVVSFRGSRTLSNWIANINFGFTDASSICSGCEAHGGFLEAWEAVAAD LTSKIKAAKATYSGYTLVVTGHSYGGALATLGGIVLRNGGYEPSVYTYGQPRVGNKALAQYITDQGSLWRVTHTD DLVPKVPPATVGFSHASPEYWITSGDNTTVTSSDIDVIVGVGSKSGNAGTLNPDTAAHNWYLGHIDACK* |
| Coding | >Pro_DTO377G3_2|g6542.t1 ATGCTTCTTCTTGGTCGTCTTTGGAGTATCGCTGCTCTTGCGGCGCTGACGGTTGCTGCTCCTTCTCGTTCTGTT CCTCGAGATGTGTCGGCTGATGTGCTCGGTCAATTGACCCTGTTCTCGCAGTGGGCTGCAGCATCATACTGCACG AACAATAGCAACTCCACCGGCGATGGGGTATCTTGCGAGCAAGGCAACTGCCCCTTGGTGGAGTCCGCTGACACA ACTACTCTATACGAGTTTGACGAGACCTCCAGCTATGGTGATGTTGCCGGCTTCCTCGCGGTTGACAAGACAAAC AAGCTACTTGTTGTCTCATTCCGAGGCAGTCGCACACTGAGTAACTGGATCGCGAACATCAACTTTGGCTTCACC GATGCTAGTAGTATCTGCAGCGGTTGCGAAGCCCACGGCGGGTTCTTGGAAGCCTGGGAGGCTGTCGCAGCTGAT CTGACATCCAAGATCAAGGCCGCAAAGGCAACATACTCGGGCTACACTCTTGTCGTGACAGGCCACAGCTATGGC GGAGCCCTTGCCACGTTGGGAGGTATTGTGCTTCGAAATGGCGGATATGAACCAAGTGTGTATACTTATGGCCAG CCACGGGTGGGTAACAAGGCTCTAGCTCAATATATCACAGACCAGGGCAGTCTCTGGCGAGTGACACATACAGAC GACTTGGTGCCTAAGGTGCCACCCGCGACTGTTGGCTTTAGCCACGCAAGTCCTGAGTACTGGATTACTAGTGGC GACAATACGACGGTGACCTCGTCTGATATTGATGTCATTGTCGGCGTGGGCTCGAAGTCTGGAAATGCGGGGACG TTGAATCCGGATACTGCAGCACACAACTGGTACTTGGGACATATTGATGCATGCAAATAG |
| Transcript | >Pro_DTO377G3_2|g6542.t1 ATGCTTCTTCTTGGTCGTCTTTGGAGTATCGCTGCTCTTGCGGCGCTGACGGTTGCTGCTCCTTCTCGTTCTGTT CCTCGAGATGTGTCGGCTGATGTGCTCGGTCAATTGACCCTGTTCTCGCAGTGGGCTGCAGCATCATACTGCACG AACAATAGCAACTCCACCGGCGATGGGGTATCTTGCGAGCAAGGCAACTGCCCCTTGGTGGAGTCCGCTGACACA ACTACTCTATACGAGTTTGACGAGACCTCCAGCTATGGTGATGTTGCCGGCTTCCTCGCGGTTGACAAGACAAAC AAGCTACTTGTTGTCTCATTCCGAGGCAGTCGCACACTGAGTAACTGGATCGCGAACATCAACTTTGGCTTCACC GATGCTAGTAGTATCTGCAGCGGTTGCGAAGCCCACGGCGGGTTCTTGGAAGCCTGGGAGGCTGTCGCAGCTGAT CTGACATCCAAGATCAAGGCCGCAAAGGCAACATACTCGGGCTACACTCTTGTCGTGACAGGCCACAGCTATGGC GGAGCCCTTGCCACGTTGGGAGGTATTGTGCTTCGAAATGGCGGATATGAACCAAGTGTGTATACTTATGGCCAG CCACGGGTGGGTAACAAGGCTCTAGCTCAATATATCACAGACCAGGGCAGTCTCTGGCGAGTGACACATACAGAC GACTTGGTGCCTAAGGTGCCACCCGCGACTGTTGGCTTTAGCCACGCAAGTCCTGAGTACTGGATTACTAGTGGC GACAATACGACGGTGACCTCGTCTGATATTGATGTCATTGTCGGCGTGGGCTCGAAGTCTGGAAATGCGGGGACG TTGAATCCGGATACTGCAGCACACAACTGGTACTTGGGACATATTGATGCATGCAAATAG |
| Gene | >Pro_DTO377G3_2|g6542.t1 ATGCTTCTTCTTGGTCGTCTTTGGAGTATCGCTGCTCTTGCGGCGCTGACGGTTGCTGCTCCTTCTCGTTCTGTT CCTCGAGGTATGAATGCGTTTGCCTTTTGTTCATGCCATCCGATGATTGACCAACTGACGCAAGCAATAGATGTG TCGGCTGATGTGCTCGGTCAATTGACCCTGTTCTCGCAGTGGGCTGCAGCATCATACTGCACGAACAATAGCAAC TCCACCGGCGATGGGGTATCTTGCGAGCAAGGCAACTGCCCCTTGGTGGAGTCCGCTGACACAACTACTCTATAC GAGTTTGACGAGTATGAGACCAACTTCCAATGTCATTCACAAGTCGTTCGCTAATACAGTGACACCTTTCAGGAC CTCCAGCTATGGTGATGTTGCCGGCTTCCTCGCGGTTGACAAGACAAACAAGCTACTTGTTGTCTCATTCCGAGG CAGTCGCACACTGAGTAACTGGATCGCGAACATCAACTTTGGCTTCACCGATGCTAGTAGTATCTGCAGCGGTTG CGAAGCCCACGGCGGGTTCTTGGAAGCCTGGGAGGCTGTCGCAGCTGATCTGACATCCAAGATCAAGGCCGCAAA GGCAACATACTCGGGCTACACTCTTGTCGTGACAGGCCACAGCTATGGCGGAGCCCTTGCCACGTTGGGAGGTAT TGTGCTTCGAAATGGCGGATATGAACCAAGTGTGGTAAGTACCATGTTTGGAAATCTGCCTTAATTGATAGTGTA TACTCACAATGAGACTAGTATACTTATGGCCAGCCACGGGTGGGTAACAAGGCTCTAGCTCAATATATCACAGAC CAGGGCAGTCTCTGGCGAGTGACACATACAGACGACTTGGTGCCTAAGGTGCCACCCGCGACTGTTGGCTTTAGC CACGCAAGTCCTGAGTACTGGATTACTAGTGGCGACAATACGACGGTGACCTCGTCTGATATTGATGTCATTGTC GGCGTGGGCTCGAAGTCTGGAAATGCGGGGACGTTGAATCCGGATACTGCAGCACACAACTGGTACTTGGGACAT ATTGATGCATGCAAATAG |