© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g6542.t1 |
| Gene name | |
| Location | scaffold_17:477909..478977 |
| Strand | - |
| Gene length (bp) | 1068 |
| Transcript length (bp) | 885 |
| Coding sequence length (bp) | 885 |
| Protein length (aa) | 295 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01764 | Lipase_3 | Lipase (class 3) | 1.5E-36 | 104 | 234 |
| PF03893 | Lipase3_N | Lipase 3 N-terminal region | 2.3E-07 | 9 | 78 |
| PF06259 | Abhydrolase_8 | Alpha/beta hydrolase | 1.9E-04 | 146 | 233 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006629 | lipid metabolic process | Yes |
| GO:0016042 | lipid catabolic process | Yes |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0009056 | catabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6542.t1 MLLLGRLWSIAALAALTVAAPSRSVPRDVSADVLGQLTLFSQWAAASYCTNNSNSTGDGVSCEQGNCPLVESADT TTLYEFDETSSYGDVAGFLAVDKTNKLLVVSFRGSRTLSNWIANINFGFTDASSICSGCEAHGGFLEAWEAVAAD LTSKIKAAKATYSGYTLVVTGHSYGGALATLGGIVLRNGGYEPSVYTYGQPRVGNKALAQYITDQGSLWRVTHTD DLVPKVPPATVGFSHASPEYWITSGDNTTVTSSDIDVIVGVGSKSGNAGTLNPDTAAHNWYLGHIDACK* |
| Coding | >Pro_DTO377G3_2|g6542.t1 ATGCTTCTTCTTGGTCGTCTTTGGAGTATCGCTGCTCTTGCGGCGCTGACGGTTGCTGCTCCTTCTCGTTCTGTT CCTCGAGATGTGTCGGCTGATGTGCTCGGTCAATTGACCCTGTTCTCGCAGTGGGCTGCAGCATCATACTGCACG AACAATAGCAACTCCACCGGCGATGGGGTATCTTGCGAGCAAGGCAACTGCCCCTTGGTGGAGTCCGCTGACACA ACTACTCTATACGAGTTTGACGAGACCTCCAGCTATGGTGATGTTGCCGGCTTCCTCGCGGTTGACAAGACAAAC AAGCTACTTGTTGTCTCATTCCGAGGCAGTCGCACACTGAGTAACTGGATCGCGAACATCAACTTTGGCTTCACC GATGCTAGTAGTATCTGCAGCGGTTGCGAAGCCCACGGCGGGTTCTTGGAAGCCTGGGAGGCTGTCGCAGCTGAT CTGACATCCAAGATCAAGGCCGCAAAGGCAACATACTCGGGCTACACTCTTGTCGTGACAGGCCACAGCTATGGC GGAGCCCTTGCCACGTTGGGAGGTATTGTGCTTCGAAATGGCGGATATGAACCAAGTGTGTATACTTATGGCCAG CCACGGGTGGGTAACAAGGCTCTAGCTCAATATATCACAGACCAGGGCAGTCTCTGGCGAGTGACACATACAGAC GACTTGGTGCCTAAGGTGCCACCCGCGACTGTTGGCTTTAGCCACGCAAGTCCTGAGTACTGGATTACTAGTGGC GACAATACGACGGTGACCTCGTCTGATATTGATGTCATTGTCGGCGTGGGCTCGAAGTCTGGAAATGCGGGGACG TTGAATCCGGATACTGCAGCACACAACTGGTACTTGGGACATATTGATGCATGCAAATAG |
| Transcript | >Pro_DTO377G3_2|g6542.t1 ATGCTTCTTCTTGGTCGTCTTTGGAGTATCGCTGCTCTTGCGGCGCTGACGGTTGCTGCTCCTTCTCGTTCTGTT CCTCGAGATGTGTCGGCTGATGTGCTCGGTCAATTGACCCTGTTCTCGCAGTGGGCTGCAGCATCATACTGCACG AACAATAGCAACTCCACCGGCGATGGGGTATCTTGCGAGCAAGGCAACTGCCCCTTGGTGGAGTCCGCTGACACA ACTACTCTATACGAGTTTGACGAGACCTCCAGCTATGGTGATGTTGCCGGCTTCCTCGCGGTTGACAAGACAAAC AAGCTACTTGTTGTCTCATTCCGAGGCAGTCGCACACTGAGTAACTGGATCGCGAACATCAACTTTGGCTTCACC GATGCTAGTAGTATCTGCAGCGGTTGCGAAGCCCACGGCGGGTTCTTGGAAGCCTGGGAGGCTGTCGCAGCTGAT CTGACATCCAAGATCAAGGCCGCAAAGGCAACATACTCGGGCTACACTCTTGTCGTGACAGGCCACAGCTATGGC GGAGCCCTTGCCACGTTGGGAGGTATTGTGCTTCGAAATGGCGGATATGAACCAAGTGTGTATACTTATGGCCAG CCACGGGTGGGTAACAAGGCTCTAGCTCAATATATCACAGACCAGGGCAGTCTCTGGCGAGTGACACATACAGAC GACTTGGTGCCTAAGGTGCCACCCGCGACTGTTGGCTTTAGCCACGCAAGTCCTGAGTACTGGATTACTAGTGGC GACAATACGACGGTGACCTCGTCTGATATTGATGTCATTGTCGGCGTGGGCTCGAAGTCTGGAAATGCGGGGACG TTGAATCCGGATACTGCAGCACACAACTGGTACTTGGGACATATTGATGCATGCAAATAG |
| Gene | >Pro_DTO377G3_2|g6542.t1 ATGCTTCTTCTTGGTCGTCTTTGGAGTATCGCTGCTCTTGCGGCGCTGACGGTTGCTGCTCCTTCTCGTTCTGTT CCTCGAGGTATGAATGCGTTTGCCTTTTGTTCATGCCATCCGATGATTGACCAACTGACGCAAGCAATAGATGTG TCGGCTGATGTGCTCGGTCAATTGACCCTGTTCTCGCAGTGGGCTGCAGCATCATACTGCACGAACAATAGCAAC TCCACCGGCGATGGGGTATCTTGCGAGCAAGGCAACTGCCCCTTGGTGGAGTCCGCTGACACAACTACTCTATAC GAGTTTGACGAGTATGAGACCAACTTCCAATGTCATTCACAAGTCGTTCGCTAATACAGTGACACCTTTCAGGAC CTCCAGCTATGGTGATGTTGCCGGCTTCCTCGCGGTTGACAAGACAAACAAGCTACTTGTTGTCTCATTCCGAGG CAGTCGCACACTGAGTAACTGGATCGCGAACATCAACTTTGGCTTCACCGATGCTAGTAGTATCTGCAGCGGTTG CGAAGCCCACGGCGGGTTCTTGGAAGCCTGGGAGGCTGTCGCAGCTGATCTGACATCCAAGATCAAGGCCGCAAA GGCAACATACTCGGGCTACACTCTTGTCGTGACAGGCCACAGCTATGGCGGAGCCCTTGCCACGTTGGGAGGTAT TGTGCTTCGAAATGGCGGATATGAACCAAGTGTGGTAAGTACCATGTTTGGAAATCTGCCTTAATTGATAGTGTA TACTCACAATGAGACTAGTATACTTATGGCCAGCCACGGGTGGGTAACAAGGCTCTAGCTCAATATATCACAGAC CAGGGCAGTCTCTGGCGAGTGACACATACAGACGACTTGGTGCCTAAGGTGCCACCCGCGACTGTTGGCTTTAGC CACGCAAGTCCTGAGTACTGGATTACTAGTGGCGACAATACGACGGTGACCTCGTCTGATATTGATGTCATTGTC GGCGTGGGCTCGAAGTCTGGAAATGCGGGGACGTTGAATCCGGATACTGCAGCACACAACTGGTACTTGGGACAT ATTGATGCATGCAAATAG |