Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g6534.t1
Gene name
Locationscaffold_17:465867..467541
Strand-
Gene length (bp)1674
Transcript length (bp)1521
Coding sequence length (bp)1521
Protein length (aa) 507

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00251 Glyco_hydro_32N Glycosyl hydrolases family 32 N-terminal domain 8.4E-63 29 241
PF00251 Glyco_hydro_32N Glycosyl hydrolases family 32 N-terminal domain 9.6E-20 243 337
PF08244 Glyco_hydro_32C Glycosyl hydrolases family 32 C terminal 1.7E-31 348 498

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 15.42 7.35 23.48
5d_25C Five days - 25 degrees Celsius 13.07 6.00 20.14
7d_25C Seven days - 25 degrees Celsius 12.83 5.84 19.83
10d_25C Ten days - 25 degrees Celsius 20.29 10.36 30.21
7d_15C Seven days - 15 degrees Celsius 19.79 8.92 30.65
7d_30C Seven days - 30 degrees Celsius 27.51 15.23 39.80

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.668111 no
3d_25C 7d_25C 0.623918 no
3d_25C 7d_15C 0.478653 no
3d_25C 7d_30C 0.032838 yes
3d_25C 10d_25C 0.394081 no
5d_25C 7d_25C 0.970357 no
5d_25C 7d_15C 0.182833 no
5d_25C 7d_30C 0.003625 yes
5d_25C 10d_25C 0.126333 no
7d_25C 7d_15C 0.162182 no
7d_25C 7d_30C 0.002761 yes
7d_25C 10d_25C 0.109902 no
7d_15C 7d_30C 0.266795 no
7d_15C 10d_25C 0.958095 no
7d_30C 10d_25C 0.273575 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g6534.t1
MGILLALALGLLGTASGLDYTEPYRPQYHFSPAENWMNDPNGLLYHDGTYHLFFQYNPAGVEWGNMSWGHATSSD
LTHWEEHPIALLARGYPNEVTEMFFSGSAVADVNNTSGFGVDGKIPLVAMYTSSYPVSQDLPSGKSITAGQQSQS
IAYSLDEGETWTTYDAENPVIHNPPSPYEAEFENFRDPFVFWHGDTQKWIAVTTLASLHKLLIWSSDNLKEWSLA
SEFGPYNSVGGVWECPRTQYFIGDFDGTTFQADPASIYPGNSSANWMDWGPDFYAAASYNGLPNGDVVQIAWMNN
WQYGTEIPTSPWRSAMSVPRQLSLQTINGKVTLVQQPQQNWQSVANHQTLQHSWKSVSKGSTKLNSPGKAFKIDL
SFSDHDSKKSLASTFAIAVRASSDFKQETLIGYNFTSKEVFVDRRNSGDASFDDTFATLYHTSLSAGADKRINLQ
IFVDWSSVEVFGGQGEVSLTAQIFPKEDATEARLVSTDGVTQNVKLQINGINSAWH*
Coding >Pro_DTO377G3_2|g6534.t1
ATGGGCATATTACTCGCATTGGCCCTGGGTCTGCTCGGGACAGCGTCCGGCCTGGACTATACCGAACCATACCGT
CCTCAATACCATTTCTCCCCTGCCGAAAATTGGATGAACGATCCTAACGGACTACTATATCACGATGGCACTTAC
CATCTTTTCTTTCAATATAACCCGGCTGGTGTTGAATGGGGGAATATGTCGTGGGGTCATGCAACGAGTAGCGAT
TTGACCCACTGGGAAGAGCACCCGATTGCTCTACTTGCTCGCGGATATCCCAACGAGGTCACCGAGATGTTCTTC
TCAGGAAGTGCGGTAGCAGATGTGAACAATACGAGTGGCTTCGGAGTGGATGGAAAGATTCCTTTGGTCGCCATG
TATACTTCTTCGTATCCCGTGTCTCAAGACCTACCAAGCGGAAAATCTATTACCGCAGGGCAGCAATCCCAGTCA
ATCGCCTATAGTCTCGACGAGGGAGAGACGTGGACAACATACGATGCCGAGAATCCTGTAATTCATAACCCACCC
TCTCCATATGAAGCAGAATTCGAAAACTTCCGGGACCCCTTCGTATTCTGGCATGGCGATACACAGAAATGGATA
GCCGTCACAACTCTGGCATCACTCCACAAGCTGCTGATATGGAGTTCTGACAACCTCAAAGAGTGGTCCTTGGCC
AGCGAGTTCGGACCCTACAACTCTGTCGGCGGCGTATGGGAATGTCCCAGAACACAATACTTCATCGGCGACTTC
GACGGAACAACTTTCCAGGCTGATCCTGCTAGCATCTATCCAGGAAACAGTTCTGCCAACTGGATGGATTGGGGT
CCGGACTTTTATGCTGCTGCCAGTTATAACGGACTTCCTAATGGAGATGTGGTCCAGATTGCGTGGATGAATAAT
TGGCAGTATGGCACGGAGATCCCGACAAGCCCTTGGCGAAGCGCCATGTCTGTTCCCCGTCAGTTGTCATTGCAG
ACGATCAATGGGAAGGTGACCCTCGTTCAACAACCGCAACAGAACTGGCAGAGTGTTGCCAACCACCAGACCTTG
CAACATTCCTGGAAATCCGTATCGAAAGGATCAACCAAACTGAACTCCCCCGGCAAGGCATTCAAGATCGACTTG
AGCTTTTCCGATCATGACTCCAAAAAATCTCTTGCATCTACGTTTGCGATCGCTGTCCGTGCTAGCTCTGACTTT
AAGCAAGAAACACTGATCGGCTACAACTTTACCAGCAAGGAGGTCTTCGTGGATCGGCGAAATTCAGGAGATGCA
TCTTTTGACGACACTTTTGCAACCTTGTATCACACATCACTGTCAGCAGGCGCGGATAAACGTATCAACCTGCAG
ATCTTCGTGGATTGGTCTAGTGTTGAGGTATTTGGGGGTCAAGGAGAGGTCTCTTTGACGGCTCAGATATTCCCT
AAGGAAGATGCAACTGAAGCGCGACTTGTCTCGACGGATGGAGTGACCCAGAACGTCAAGCTTCAGATCAACGGG
ATTAATTCAGCGTGGCACTAG
Transcript >Pro_DTO377G3_2|g6534.t1
ATGGGCATATTACTCGCATTGGCCCTGGGTCTGCTCGGGACAGCGTCCGGCCTGGACTATACCGAACCATACCGT
CCTCAATACCATTTCTCCCCTGCCGAAAATTGGATGAACGATCCTAACGGACTACTATATCACGATGGCACTTAC
CATCTTTTCTTTCAATATAACCCGGCTGGTGTTGAATGGGGGAATATGTCGTGGGGTCATGCAACGAGTAGCGAT
TTGACCCACTGGGAAGAGCACCCGATTGCTCTACTTGCTCGCGGATATCCCAACGAGGTCACCGAGATGTTCTTC
TCAGGAAGTGCGGTAGCAGATGTGAACAATACGAGTGGCTTCGGAGTGGATGGAAAGATTCCTTTGGTCGCCATG
TATACTTCTTCGTATCCCGTGTCTCAAGACCTACCAAGCGGAAAATCTATTACCGCAGGGCAGCAATCCCAGTCA
ATCGCCTATAGTCTCGACGAGGGAGAGACGTGGACAACATACGATGCCGAGAATCCTGTAATTCATAACCCACCC
TCTCCATATGAAGCAGAATTCGAAAACTTCCGGGACCCCTTCGTATTCTGGCATGGCGATACACAGAAATGGATA
GCCGTCACAACTCTGGCATCACTCCACAAGCTGCTGATATGGAGTTCTGACAACCTCAAAGAGTGGTCCTTGGCC
AGCGAGTTCGGACCCTACAACTCTGTCGGCGGCGTATGGGAATGTCCCAGAACACAATACTTCATCGGCGACTTC
GACGGAACAACTTTCCAGGCTGATCCTGCTAGCATCTATCCAGGAAACAGTTCTGCCAACTGGATGGATTGGGGT
CCGGACTTTTATGCTGCTGCCAGTTATAACGGACTTCCTAATGGAGATGTGGTCCAGATTGCGTGGATGAATAAT
TGGCAGTATGGCACGGAGATCCCGACAAGCCCTTGGCGAAGCGCCATGTCTGTTCCCCGTCAGTTGTCATTGCAG
ACGATCAATGGGAAGGTGACCCTCGTTCAACAACCGCAACAGAACTGGCAGAGTGTTGCCAACCACCAGACCTTG
CAACATTCCTGGAAATCCGTATCGAAAGGATCAACCAAACTGAACTCCCCCGGCAAGGCATTCAAGATCGACTTG
AGCTTTTCCGATCATGACTCCAAAAAATCTCTTGCATCTACGTTTGCGATCGCTGTCCGTGCTAGCTCTGACTTT
AAGCAAGAAACACTGATCGGCTACAACTTTACCAGCAAGGAGGTCTTCGTGGATCGGCGAAATTCAGGAGATGCA
TCTTTTGACGACACTTTTGCAACCTTGTATCACACATCACTGTCAGCAGGCGCGGATAAACGTATCAACCTGCAG
ATCTTCGTGGATTGGTCTAGTGTTGAGGTATTTGGGGGTCAAGGAGAGGTCTCTTTGACGGCTCAGATATTCCCT
AAGGAAGATGCAACTGAAGCGCGACTTGTCTCGACGGATGGAGTGACCCAGAACGTCAAGCTTCAGATCAACGGG
ATTAATTCAGCGTGGCACTAG
Gene >Pro_DTO377G3_2|g6534.t1
ATGGGCATATTACTCGCATTGGCCCTGGGTCTGCTCGGGACAGCGTCCGGCCTGGACTATACCGAACCATACCGT
CCTCAATACCATTTCTCCCCTGCCGAAAATTGGATGAACGATCCTAACGGACTACTATATCACGATGGCACTTAC
CATCTTTTCTTTCAATATAACCCGGCTGGTGTTGAATGGGGGAATATGTCGTGGGGTCATGCAACGAGTAGCGAT
TTGACCCACTGGGAAGAGCACCCGATTGCTCTACTTGCTCGCGGATATCCCAACGAGGTCACCGAGATGTTCTTC
TCAGGAAGTGCGGTAGCAGATGTGAACAATACGAGTGGCTTCGGAGTGGATGGAAAGATTCCTTTGGTCGCCATG
TATACTTCTTCGGTACGCGTGGCTATTTCACTTGATCACTGATGGAGACTGACAAGATTCATAAAGTATCCCGTG
TCTCAAGACCTACCAAGCGGAAAATCTATTACCGCAGGGCAGCAATCCCAGTCAATCGCCTATAGTCTCGACGAG
GGAGAGACGTGGACAACATACGATGCCGAGAATCCTGTAATTCATAACCCACCCTCTCCATATGAAGCAGAATTC
GAAAACTTCCGGGACCCCTTCGTATTCTGGCATGGCGATACACAGAAATGGATAGCCGTCACAACTCTGGCATCA
CTCCACAAGCTGCTGATATGGAGTTCTGACAACCTCAAAGAGTGGTCCTTGGCCAGCGAGTTCGGACCCTACAAC
TCTGTCGGCGGCGTATGGGAATGTCCCAGTTTGATTCAACTGCCCGTCAAAGGAAAGAAATCAATCAAGAAATGA
GTAATTGTTCTTGGGCTCAATCCTGGTGGACCACCTGGCACGGTCGGATCAGGAACACAATACTTCATCGGCGAC
TTCGACGGAACAACTTTCCAGGCTGATCCTGCTAGCATCTATCCAGGAAACAGTTCTGCCAACTGGATGGATTGG
GGTCCGGACTTTTATGCTGCTGCCAGTTATAACGGACTTCCTAATGGAGATGTGGTCCAGATTGCGTGGATGAAT
AATTGGCAGTATGGCACGGAGATCCCGACAAGCCCTTGGCGAAGCGCCATGTCTGTTCCCCGTCAGTTGTCATTG
CAGACGATCAATGGGAAGGTGACCCTCGTTCAACAACCGCAACAGAACTGGCAGAGTGTTGCCAACCACCAGACC
TTGCAACATTCCTGGAAATCCGTATCGAAAGGATCAACCAAACTGAACTCCCCCGGCAAGGCATTCAAGATCGAC
TTGAGCTTTTCCGATCATGACTCCAAAAAATCTCTTGCATCTACGTTTGCGATCGCTGTCCGTGCTAGCTCTGAC
TTTAAGCAAGAAACACTGATCGGCTACAACTTTACCAGCAAGGAGGTCTTCGTGGATCGGCGAAATTCAGGAGAT
GCATCTTTTGACGACACTTTTGCAACCTTGTATCACACATCACTGTCAGCAGGCGCGGATAAACGTATCAACCTG
CAGATCTTCGTGGATTGGTCTAGTGTTGAGGTATTTGGGGGTCAAGGAGAGGTCTCTTTGACGGCTCAGATATTC
CCTAAGGAAGATGCAACTGAAGCGCGACTTGTCTCGACGGATGGAGTGACCCAGAACGTCAAGCTTCAGATCAAC
GGGATTAATTCAGCGTGGCACTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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