© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6534.t1 |
| Gene name | |
| Location | scaffold_17:465867..467541 |
| Strand | - |
| Gene length (bp) | 1674 |
| Transcript length (bp) | 1521 |
| Coding sequence length (bp) | 1521 |
| Protein length (aa) | 507 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00251 | Glyco_hydro_32N | Glycosyl hydrolases family 32 N-terminal domain | 8.4E-63 | 29 | 241 |
| PF00251 | Glyco_hydro_32N | Glycosyl hydrolases family 32 N-terminal domain | 9.6E-20 | 243 | 337 |
| PF08244 | Glyco_hydro_32C | Glycosyl hydrolases family 32 C terminal | 1.7E-31 | 348 | 498 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 18 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 15.42 | 7.35 | 23.48 |
| 5d_25C | Five days - 25 degrees Celsius | 13.07 | 6.00 | 20.14 |
| 7d_25C | Seven days - 25 degrees Celsius | 12.83 | 5.84 | 19.83 |
| 10d_25C | Ten days - 25 degrees Celsius | 20.29 | 10.36 | 30.21 |
| 7d_15C | Seven days - 15 degrees Celsius | 19.79 | 8.92 | 30.65 |
| 7d_30C | Seven days - 30 degrees Celsius | 27.51 | 15.23 | 39.80 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.668111 | no |
| 3d_25C | 7d_25C | 0.623918 | no |
| 3d_25C | 7d_15C | 0.478653 | no |
| 3d_25C | 7d_30C | 0.032838 | yes |
| 3d_25C | 10d_25C | 0.394081 | no |
| 5d_25C | 7d_25C | 0.970357 | no |
| 5d_25C | 7d_15C | 0.182833 | no |
| 5d_25C | 7d_30C | 0.003625 | yes |
| 5d_25C | 10d_25C | 0.126333 | no |
| 7d_25C | 7d_15C | 0.162182 | no |
| 7d_25C | 7d_30C | 0.002761 | yes |
| 7d_25C | 10d_25C | 0.109902 | no |
| 7d_15C | 7d_30C | 0.266795 | no |
| 7d_15C | 10d_25C | 0.958095 | no |
| 7d_30C | 10d_25C | 0.273575 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6534.t1 MGILLALALGLLGTASGLDYTEPYRPQYHFSPAENWMNDPNGLLYHDGTYHLFFQYNPAGVEWGNMSWGHATSSD LTHWEEHPIALLARGYPNEVTEMFFSGSAVADVNNTSGFGVDGKIPLVAMYTSSYPVSQDLPSGKSITAGQQSQS IAYSLDEGETWTTYDAENPVIHNPPSPYEAEFENFRDPFVFWHGDTQKWIAVTTLASLHKLLIWSSDNLKEWSLA SEFGPYNSVGGVWECPRTQYFIGDFDGTTFQADPASIYPGNSSANWMDWGPDFYAAASYNGLPNGDVVQIAWMNN WQYGTEIPTSPWRSAMSVPRQLSLQTINGKVTLVQQPQQNWQSVANHQTLQHSWKSVSKGSTKLNSPGKAFKIDL SFSDHDSKKSLASTFAIAVRASSDFKQETLIGYNFTSKEVFVDRRNSGDASFDDTFATLYHTSLSAGADKRINLQ IFVDWSSVEVFGGQGEVSLTAQIFPKEDATEARLVSTDGVTQNVKLQINGINSAWH* |
| Coding | >Pro_DTO377G3_2|g6534.t1 ATGGGCATATTACTCGCATTGGCCCTGGGTCTGCTCGGGACAGCGTCCGGCCTGGACTATACCGAACCATACCGT CCTCAATACCATTTCTCCCCTGCCGAAAATTGGATGAACGATCCTAACGGACTACTATATCACGATGGCACTTAC CATCTTTTCTTTCAATATAACCCGGCTGGTGTTGAATGGGGGAATATGTCGTGGGGTCATGCAACGAGTAGCGAT TTGACCCACTGGGAAGAGCACCCGATTGCTCTACTTGCTCGCGGATATCCCAACGAGGTCACCGAGATGTTCTTC TCAGGAAGTGCGGTAGCAGATGTGAACAATACGAGTGGCTTCGGAGTGGATGGAAAGATTCCTTTGGTCGCCATG TATACTTCTTCGTATCCCGTGTCTCAAGACCTACCAAGCGGAAAATCTATTACCGCAGGGCAGCAATCCCAGTCA ATCGCCTATAGTCTCGACGAGGGAGAGACGTGGACAACATACGATGCCGAGAATCCTGTAATTCATAACCCACCC TCTCCATATGAAGCAGAATTCGAAAACTTCCGGGACCCCTTCGTATTCTGGCATGGCGATACACAGAAATGGATA GCCGTCACAACTCTGGCATCACTCCACAAGCTGCTGATATGGAGTTCTGACAACCTCAAAGAGTGGTCCTTGGCC AGCGAGTTCGGACCCTACAACTCTGTCGGCGGCGTATGGGAATGTCCCAGAACACAATACTTCATCGGCGACTTC GACGGAACAACTTTCCAGGCTGATCCTGCTAGCATCTATCCAGGAAACAGTTCTGCCAACTGGATGGATTGGGGT CCGGACTTTTATGCTGCTGCCAGTTATAACGGACTTCCTAATGGAGATGTGGTCCAGATTGCGTGGATGAATAAT TGGCAGTATGGCACGGAGATCCCGACAAGCCCTTGGCGAAGCGCCATGTCTGTTCCCCGTCAGTTGTCATTGCAG ACGATCAATGGGAAGGTGACCCTCGTTCAACAACCGCAACAGAACTGGCAGAGTGTTGCCAACCACCAGACCTTG CAACATTCCTGGAAATCCGTATCGAAAGGATCAACCAAACTGAACTCCCCCGGCAAGGCATTCAAGATCGACTTG AGCTTTTCCGATCATGACTCCAAAAAATCTCTTGCATCTACGTTTGCGATCGCTGTCCGTGCTAGCTCTGACTTT AAGCAAGAAACACTGATCGGCTACAACTTTACCAGCAAGGAGGTCTTCGTGGATCGGCGAAATTCAGGAGATGCA TCTTTTGACGACACTTTTGCAACCTTGTATCACACATCACTGTCAGCAGGCGCGGATAAACGTATCAACCTGCAG ATCTTCGTGGATTGGTCTAGTGTTGAGGTATTTGGGGGTCAAGGAGAGGTCTCTTTGACGGCTCAGATATTCCCT AAGGAAGATGCAACTGAAGCGCGACTTGTCTCGACGGATGGAGTGACCCAGAACGTCAAGCTTCAGATCAACGGG ATTAATTCAGCGTGGCACTAG |
| Transcript | >Pro_DTO377G3_2|g6534.t1 ATGGGCATATTACTCGCATTGGCCCTGGGTCTGCTCGGGACAGCGTCCGGCCTGGACTATACCGAACCATACCGT CCTCAATACCATTTCTCCCCTGCCGAAAATTGGATGAACGATCCTAACGGACTACTATATCACGATGGCACTTAC CATCTTTTCTTTCAATATAACCCGGCTGGTGTTGAATGGGGGAATATGTCGTGGGGTCATGCAACGAGTAGCGAT TTGACCCACTGGGAAGAGCACCCGATTGCTCTACTTGCTCGCGGATATCCCAACGAGGTCACCGAGATGTTCTTC TCAGGAAGTGCGGTAGCAGATGTGAACAATACGAGTGGCTTCGGAGTGGATGGAAAGATTCCTTTGGTCGCCATG TATACTTCTTCGTATCCCGTGTCTCAAGACCTACCAAGCGGAAAATCTATTACCGCAGGGCAGCAATCCCAGTCA ATCGCCTATAGTCTCGACGAGGGAGAGACGTGGACAACATACGATGCCGAGAATCCTGTAATTCATAACCCACCC TCTCCATATGAAGCAGAATTCGAAAACTTCCGGGACCCCTTCGTATTCTGGCATGGCGATACACAGAAATGGATA GCCGTCACAACTCTGGCATCACTCCACAAGCTGCTGATATGGAGTTCTGACAACCTCAAAGAGTGGTCCTTGGCC AGCGAGTTCGGACCCTACAACTCTGTCGGCGGCGTATGGGAATGTCCCAGAACACAATACTTCATCGGCGACTTC GACGGAACAACTTTCCAGGCTGATCCTGCTAGCATCTATCCAGGAAACAGTTCTGCCAACTGGATGGATTGGGGT CCGGACTTTTATGCTGCTGCCAGTTATAACGGACTTCCTAATGGAGATGTGGTCCAGATTGCGTGGATGAATAAT TGGCAGTATGGCACGGAGATCCCGACAAGCCCTTGGCGAAGCGCCATGTCTGTTCCCCGTCAGTTGTCATTGCAG ACGATCAATGGGAAGGTGACCCTCGTTCAACAACCGCAACAGAACTGGCAGAGTGTTGCCAACCACCAGACCTTG CAACATTCCTGGAAATCCGTATCGAAAGGATCAACCAAACTGAACTCCCCCGGCAAGGCATTCAAGATCGACTTG AGCTTTTCCGATCATGACTCCAAAAAATCTCTTGCATCTACGTTTGCGATCGCTGTCCGTGCTAGCTCTGACTTT AAGCAAGAAACACTGATCGGCTACAACTTTACCAGCAAGGAGGTCTTCGTGGATCGGCGAAATTCAGGAGATGCA TCTTTTGACGACACTTTTGCAACCTTGTATCACACATCACTGTCAGCAGGCGCGGATAAACGTATCAACCTGCAG ATCTTCGTGGATTGGTCTAGTGTTGAGGTATTTGGGGGTCAAGGAGAGGTCTCTTTGACGGCTCAGATATTCCCT AAGGAAGATGCAACTGAAGCGCGACTTGTCTCGACGGATGGAGTGACCCAGAACGTCAAGCTTCAGATCAACGGG ATTAATTCAGCGTGGCACTAG |
| Gene | >Pro_DTO377G3_2|g6534.t1 ATGGGCATATTACTCGCATTGGCCCTGGGTCTGCTCGGGACAGCGTCCGGCCTGGACTATACCGAACCATACCGT CCTCAATACCATTTCTCCCCTGCCGAAAATTGGATGAACGATCCTAACGGACTACTATATCACGATGGCACTTAC CATCTTTTCTTTCAATATAACCCGGCTGGTGTTGAATGGGGGAATATGTCGTGGGGTCATGCAACGAGTAGCGAT TTGACCCACTGGGAAGAGCACCCGATTGCTCTACTTGCTCGCGGATATCCCAACGAGGTCACCGAGATGTTCTTC TCAGGAAGTGCGGTAGCAGATGTGAACAATACGAGTGGCTTCGGAGTGGATGGAAAGATTCCTTTGGTCGCCATG TATACTTCTTCGGTACGCGTGGCTATTTCACTTGATCACTGATGGAGACTGACAAGATTCATAAAGTATCCCGTG TCTCAAGACCTACCAAGCGGAAAATCTATTACCGCAGGGCAGCAATCCCAGTCAATCGCCTATAGTCTCGACGAG GGAGAGACGTGGACAACATACGATGCCGAGAATCCTGTAATTCATAACCCACCCTCTCCATATGAAGCAGAATTC GAAAACTTCCGGGACCCCTTCGTATTCTGGCATGGCGATACACAGAAATGGATAGCCGTCACAACTCTGGCATCA CTCCACAAGCTGCTGATATGGAGTTCTGACAACCTCAAAGAGTGGTCCTTGGCCAGCGAGTTCGGACCCTACAAC TCTGTCGGCGGCGTATGGGAATGTCCCAGTTTGATTCAACTGCCCGTCAAAGGAAAGAAATCAATCAAGAAATGA GTAATTGTTCTTGGGCTCAATCCTGGTGGACCACCTGGCACGGTCGGATCAGGAACACAATACTTCATCGGCGAC TTCGACGGAACAACTTTCCAGGCTGATCCTGCTAGCATCTATCCAGGAAACAGTTCTGCCAACTGGATGGATTGG GGTCCGGACTTTTATGCTGCTGCCAGTTATAACGGACTTCCTAATGGAGATGTGGTCCAGATTGCGTGGATGAAT AATTGGCAGTATGGCACGGAGATCCCGACAAGCCCTTGGCGAAGCGCCATGTCTGTTCCCCGTCAGTTGTCATTG CAGACGATCAATGGGAAGGTGACCCTCGTTCAACAACCGCAACAGAACTGGCAGAGTGTTGCCAACCACCAGACC TTGCAACATTCCTGGAAATCCGTATCGAAAGGATCAACCAAACTGAACTCCCCCGGCAAGGCATTCAAGATCGAC TTGAGCTTTTCCGATCATGACTCCAAAAAATCTCTTGCATCTACGTTTGCGATCGCTGTCCGTGCTAGCTCTGAC TTTAAGCAAGAAACACTGATCGGCTACAACTTTACCAGCAAGGAGGTCTTCGTGGATCGGCGAAATTCAGGAGAT GCATCTTTTGACGACACTTTTGCAACCTTGTATCACACATCACTGTCAGCAGGCGCGGATAAACGTATCAACCTG CAGATCTTCGTGGATTGGTCTAGTGTTGAGGTATTTGGGGGTCAAGGAGAGGTCTCTTTGACGGCTCAGATATTC CCTAAGGAAGATGCAACTGAAGCGCGACTTGTCTCGACGGATGGAGTGACCCAGAACGTCAAGCTTCAGATCAAC GGGATTAATTCAGCGTGGCACTAG |