© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6524.t1 |
| Gene name | |
| Location | scaffold_17:442397..444514 |
| Strand | + |
| Gene length (bp) | 2117 |
| Transcript length (bp) | 1860 |
| Coding sequence length (bp) | 1860 |
| Protein length (aa) | 620 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00641 | zf-RanBP | Zn-finger in Ran binding protein and others | 8.5E-11 | 352 | 379 |
| PF00641 | zf-RanBP | Zn-finger in Ran binding protein and others | 4.5E-09 | 429 | 459 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.8E-07 | 257 | 324 |
| PF00929 | RNase_T | Exonuclease | 1.2E-06 | 21 | 144 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 11.36 | 5.27 | 17.45 |
| 5d_25C | Five days - 25 degrees Celsius | 22.46 | 12.30 | 32.62 |
| 7d_25C | Seven days - 25 degrees Celsius | 25.81 | 14.53 | 37.09 |
| 10d_25C | Ten days - 25 degrees Celsius | 29.09 | 16.77 | 41.42 |
| 7d_15C | Seven days - 15 degrees Celsius | 10.68 | 4.88 | 16.48 |
| 7d_30C | Seven days - 30 degrees Celsius | 27.73 | 15.78 | 39.68 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.009446 | yes |
| 3d_25C | 7d_25C | 0.002297 | yes |
| 3d_25C | 7d_15C | 0.889781 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.662276 | no |
| 5d_25C | 7d_15C | 0.003625 | yes |
| 5d_25C | 7d_30C | 0.451108 | no |
| 5d_25C | 10d_25C | 0.321637 | no |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.836434 | no |
| 7d_25C | 10d_25C | 0.702808 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.890381 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6524.t1 MAAVSAPTPKLDRYIVIHVATTCDEHGVYVTKDSAEVIELGWILLDTKTCEELHRESVLVKPVNTPITPLCTSLT TLTWEHVRSAGTFRDAISRFDAFAQEHLISKHLEFAFVTLDSWDLRVQLPREARDKAVVLPAYLQHSRTFDLRTE YQRWQTHHPESLPFGPSSLSNICAALEVEPVQSSAPIKHNLPFHLQALAPASPRRAMEESVTLARVLRGLIRKSQ PPQEHPEILTRPMDAHADVRAFLAERSKVLHLSGLPHDTTQSELESWFTQFGGRPIAFWTLRTPDQHKPTGTGFA VFSSHEEAAESLCMNGRALNEKAIEVSPSSSRVLDRAAEILTPFPPSKNRPRPGDWTCPSCGFSNFQRRTACFRC SFPAMAAAPDPMNYGNYGYGPPSMMPPHMGHGGHGMGGGHSRGMGGNGGVVPFRAGDWKCGSEGCGYHNFAKNIN CLRCGAPRSGAAVVADSAFPSPMDPPSQFNMGPNSMTSTPAPAPFASTAGGFGGFGQQFGGPPNNYALPSGGLGN NTPGAYPPMGQMNSGYGSSGTSHSAASFANPATQAAFTGADHGVPSTSASNGAFYGTDGASDPFAFLSSGLGGLT VSDDPHSRRNGSGANKSPA* |
| Coding | >Pro_DTO377G3_2|g6524.t1 ATGGCGGCCGTTTCAGCACCAACCCCCAAGCTGGATCGATACATCGTCATCCACGTTGCAACCACCTGCGACGAA CATGGCGTATATGTGACCAAGGACTCGGCTGAGGTCATTGAGTTAGGCTGGATCTTGTTGGACACCAAGACCTGC GAGGAATTGCACCGCGAAAGTGTTCTCGTCAAACCCGTCAATACTCCAATCACCCCGCTTTGCACGAGCTTGACC ACTTTGACATGGGAACACGTTCGCTCCGCAGGCACTTTCCGGGACGCCATCTCTCGATTCGACGCCTTCGCCCAA GAACACCTCATTAGCAAACATCTCGAGTTTGCTTTTGTGACTTTGGACTCGTGGGATCTGCGGGTGCAGCTGCCC CGCGAGGCCCGCGACAAGGCCGTCGTGCTTCCCGCATACCTGCAGCACTCCCGTACTTTCGACTTGCGAACAGAA TATCAGCGCTGGCAGACGCACCACCCCGAGTCGCTTCCTTTCGGTCCCAGCTCGCTCTCCAACATCTGCGCTGCC CTCGAGGTCGAGCCCGTTCAGTCGTCCGCCCCGATTAAGCACAACCTTCCTTTCCATTTGCAAGCTTTGGCCCCC GCTTCGCCCCGCCGTGCCATGGAGGAATCTGTTACTCTCGCCCGTGTGCTTCGTGGTTTGATTCGCAAGTCGCAG CCGCCCCAGGAACACCCTGAGATCCTCACTCGTCCTATGGATGCTCATGCCGACGTTCGGGCCTTTTTGGCGGAA CGGAGCAAGGTCCTGCACCTTAGTGGTCTGCCCCACGATACCACTCAGTCTGAGTTGGAGAGCTGGTTCACTCAG TTCGGCGGTCGTCCCATCGCATTCTGGACTCTGCGGACGCCAGACCAGCACAAGCCCACTGGAACTGGCTTTGCC GTCTTCTCTTCACACGAGGAGGCTGCCGAAAGCCTGTGCATGAACGGCCGTGCGCTCAATGAAAAGGCGATTGAG GTCTCTCCCTCTTCCAGCCGGGTTCTAGACCGGGCCGCCGAGATTCTCACTCCTTTCCCGCCCTCCAAGAACCGT CCCCGTCCTGGTGACTGGACTTGCCCGTCTTGCGGCTTCTCTAACTTCCAGCGCCGCACAGCATGCTTCCGCTGC TCGTTCCCCGCCATGGCGGCTGCACCCGACCCAATGAACTACGGAAACTACGGCTACGGTCCGCCATCAATGATG CCTCCTCACATGGGCCACGGCGGTCACGGTATGGGTGGTGGTCACTCGCGTGGTATGGGTGGCAACGGCGGCGTT GTCCCCTTCCGCGCAGGCGACTGGAAGTGTGGTTCTGAGGGCTGTGGCTATCACAACTTTGCGAAGAACATCAAC TGTCTACGCTGCGGTGCCCCTCGCTCGGGCGCTGCCGTCGTGGCAGACTCGGCATTCCCGTCCCCGATGGATCCA CCGTCGCAATTTAATATGGGGCCCAACTCGATGACTAGCACCCCTGCACCAGCTCCGTTCGCCTCGACCGCCGGT GGATTCGGTGGATTCGGTCAGCAGTTTGGTGGCCCGCCTAACAACTACGCTCTGCCCTCGGGTGGCCTGGGTAAC AACACCCCCGGTGCGTACCCTCCCATGGGTCAGATGAACTCGGGCTACGGCTCTTCCGGCACCTCGCACTCCGCC GCCTCGTTCGCCAACCCGGCCACTCAGGCTGCTTTCACTGGTGCGGACCACGGTGTTCCATCCACCAGTGCTTCG AACGGTGCCTTCTACGGTACCGATGGTGCTAGCGACCCTTTCGCCTTCTTGTCCAGTGGCCTCGGTGGTCTGACA GTGTCTGACGACCCCCACTCTCGTCGCAACGGCTCCGGTGCCAACAAGTCGCCCGCTTAA |
| Transcript | >Pro_DTO377G3_2|g6524.t1 ATGGCGGCCGTTTCAGCACCAACCCCCAAGCTGGATCGATACATCGTCATCCACGTTGCAACCACCTGCGACGAA CATGGCGTATATGTGACCAAGGACTCGGCTGAGGTCATTGAGTTAGGCTGGATCTTGTTGGACACCAAGACCTGC GAGGAATTGCACCGCGAAAGTGTTCTCGTCAAACCCGTCAATACTCCAATCACCCCGCTTTGCACGAGCTTGACC ACTTTGACATGGGAACACGTTCGCTCCGCAGGCACTTTCCGGGACGCCATCTCTCGATTCGACGCCTTCGCCCAA GAACACCTCATTAGCAAACATCTCGAGTTTGCTTTTGTGACTTTGGACTCGTGGGATCTGCGGGTGCAGCTGCCC CGCGAGGCCCGCGACAAGGCCGTCGTGCTTCCCGCATACCTGCAGCACTCCCGTACTTTCGACTTGCGAACAGAA TATCAGCGCTGGCAGACGCACCACCCCGAGTCGCTTCCTTTCGGTCCCAGCTCGCTCTCCAACATCTGCGCTGCC CTCGAGGTCGAGCCCGTTCAGTCGTCCGCCCCGATTAAGCACAACCTTCCTTTCCATTTGCAAGCTTTGGCCCCC GCTTCGCCCCGCCGTGCCATGGAGGAATCTGTTACTCTCGCCCGTGTGCTTCGTGGTTTGATTCGCAAGTCGCAG CCGCCCCAGGAACACCCTGAGATCCTCACTCGTCCTATGGATGCTCATGCCGACGTTCGGGCCTTTTTGGCGGAA CGGAGCAAGGTCCTGCACCTTAGTGGTCTGCCCCACGATACCACTCAGTCTGAGTTGGAGAGCTGGTTCACTCAG TTCGGCGGTCGTCCCATCGCATTCTGGACTCTGCGGACGCCAGACCAGCACAAGCCCACTGGAACTGGCTTTGCC GTCTTCTCTTCACACGAGGAGGCTGCCGAAAGCCTGTGCATGAACGGCCGTGCGCTCAATGAAAAGGCGATTGAG GTCTCTCCCTCTTCCAGCCGGGTTCTAGACCGGGCCGCCGAGATTCTCACTCCTTTCCCGCCCTCCAAGAACCGT CCCCGTCCTGGTGACTGGACTTGCCCGTCTTGCGGCTTCTCTAACTTCCAGCGCCGCACAGCATGCTTCCGCTGC TCGTTCCCCGCCATGGCGGCTGCACCCGACCCAATGAACTACGGAAACTACGGCTACGGTCCGCCATCAATGATG CCTCCTCACATGGGCCACGGCGGTCACGGTATGGGTGGTGGTCACTCGCGTGGTATGGGTGGCAACGGCGGCGTT GTCCCCTTCCGCGCAGGCGACTGGAAGTGTGGTTCTGAGGGCTGTGGCTATCACAACTTTGCGAAGAACATCAAC TGTCTACGCTGCGGTGCCCCTCGCTCGGGCGCTGCCGTCGTGGCAGACTCGGCATTCCCGTCCCCGATGGATCCA CCGTCGCAATTTAATATGGGGCCCAACTCGATGACTAGCACCCCTGCACCAGCTCCGTTCGCCTCGACCGCCGGT GGATTCGGTGGATTCGGTCAGCAGTTTGGTGGCCCGCCTAACAACTACGCTCTGCCCTCGGGTGGCCTGGGTAAC AACACCCCCGGTGCGTACCCTCCCATGGGTCAGATGAACTCGGGCTACGGCTCTTCCGGCACCTCGCACTCCGCC GCCTCGTTCGCCAACCCGGCCACTCAGGCTGCTTTCACTGGTGCGGACCACGGTGTTCCATCCACCAGTGCTTCG AACGGTGCCTTCTACGGTACCGATGGTGCTAGCGACCCTTTCGCCTTCTTGTCCAGTGGCCTCGGTGGTCTGACA GTGTCTGACGACCCCCACTCTCGTCGCAACGGCTCCGGTGCCAACAAGTCGCCCGCTTAA |
| Gene | >Pro_DTO377G3_2|g6524.t1 ATGGCGGCCGTTTCAGCACCAACCCCCAAGCTGGATCGATACATCGTCATCCACGTTGCAACCACCTGCGACGAA CATGGCGTATATGTGACCAAGGACTCGGCTGAGGTCATTGAGTTAGGCTGGATCTTGTTGGACACCAAGACCTGC GAGGAAGTCCGTTCCCCCCAGTGTCTTCTACCCAACATACAACTTACTCCCGAGACCATGGAAGCTGACATATTT TTTTCCCCAATTGTTTAGTTGCACCGCGAAAGTGTTCTCGTCAAACCCGTCAATACTCCAATCACCCCGCTTTGC AGTAAGATCGCCTTGAAAACAACCTTGGATTGCATTGGGTTTTGCTAGGAATCCAATTTGTGGCTGACAATTCTC TGAAGCGAGCTTGACCACTTTGACATGGGAACACGTTCGCTCCGCAGGCACTTTCCGGGACGCCATCTCTCGATT CGACGCCTTCGCCCAAGAACACCTCATTAGCAAACATCTCGAGTTTGCTTTTGTGACTTTGGACTCGTGGGATCT GCGGGTGCAGCTGCCCCGCGAGGCCCGCGACAAGGCCGTCGTGCTTCCCGCATACCTGCAGCACTCCCGTACTTT CGACTTGCGAACAGAATATCAGCGCTGGCAGACGCACCACCCCGAGTCGCTTCCTTTCGGTCCCAGCTCGCTCTC CAACATCTGCGCTGCCCTCGAGGTCGAGCCCGTTCAGTCGTCCGCCCCGATTAAGCACAACCTTCCTTTCCATTT GCAAGCTTTGGCCCCCGCTTCGCCCCGCCGTGCCATGGAGGAATCTGTTACTCTCGCCCGTGTGCTTCGTGGTTT GATTCGCAAGTCGCAGCCGCCCCAGGAACACCCTGAGATCCTCACTCGTCCTATGGATGCTCATGCCGACGTTCG GGCCTTTTTGGCGGAACGGAGCAAGGTCCTGCACCTTAGTGGTCTGCCCCACGATACCACTCAGTCTGAGTTGGA GAGCTGGTTCACTCAGTTCGGCGGTCGTCCCATCGCATTCTGGACTCTGCGGACGCCAGACCAGCACAAGCCCAC TGGAACTGGCTTTGCCGTCTTCTCTTCACACGAGGAGGTGAGTTTGCATCTTGGTATTCATTTGGCTGTTCTACG CTACAGAACTTCCTGTGTTTTATCCTTAGTCTTGCCTACTAACTGTTTACTAGGCTGCCGAAAGCCTGTGCATGA ACGGCCGTGCGCTCAATGAAAAGGCGATTGAGGTCTCTCCCTCTTCCAGCCGGGTTCTAGACCGGGCCGCCGAGA TTCTCACTCCTTTCCCGCCCTCCAAGAACCGTCCCCGTCCTGGTGACTGGACTTGCCCGTCTTGCGGCTTCTCTA ACTTCCAGCGCCGCACAGCATGCTTCCGCTGCTCGTTCCCCGCCATGGCGGCTGCACCCGACCCAATGAACTACG GAAACTACGGCTACGGTCCGCCATCAATGATGCCTCCTCACATGGGCCACGGCGGTCACGGTATGGGTGGTGGTC ACTCGCGTGGTATGGGTGGCAACGGCGGCGTTGTCCCCTTCCGCGCAGGCGACTGGAAGTGTGGTTCTGAGGGCT GTGGCTATCACAACTTTGCGAAGAACATCAACTGTCTACGCTGCGGTGCCCCTCGCTCGGGCGCTGCCGTCGTGG CAGACTCGGCATTCCCGTCCCCGATGGATCCACCGTCGCAATTTAATATGGGGCCCAACTCGATGACTAGCACCC CTGCACCAGCTCCGTTCGCCTCGACCGCCGGTGGATTCGGTGGATTCGGTCAGCAGTTTGGTGGCCCGCCTAACA ACTACGCTCTGCCCTCGGGTGGCCTGGGTAACAACACCCCCGGTGCGTACCCTCCCATGGGTCAGATGAACTCGG GCTACGGCTCTTCCGGCACCTCGCACTCCGCCGCCTCGTTCGCCAACCCGGCCACTCAGGCTGCTTTCACTGGTG CGGACCACGGTGTTCCATCCACCAGTGCTTCGAACGGTGCCTTCTACGGTACCGATGGTGCTAGCGACCCTTTCG CCTTCTTGTCCAGTGGCCTCGGTGGTCTGACAGTGTCTGACGACCCCCACTCTCGTCGCAACGGCTCCGGTGCCA ACAAGTCGCCCGCTTAA |