© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6516.t1 |
| Gene name | |
| Location | scaffold_17:425970..427071 |
| Strand | + |
| Gene length (bp) | 1101 |
| Transcript length (bp) | 1101 |
| Coding sequence length (bp) | 1101 |
| Protein length (aa) | 367 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00710 | Asparaginase | Asparaginase, N-terminal | 8.4E-54 | 44 | 230 |
| PF17763 | Asparaginase_C | Glutaminase/Asparaginase C-terminal domain | 1.3E-19 | 257 | 362 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 4.05 | 1.01 | 7.09 |
| 5d_25C | Five days - 25 degrees Celsius | 2.91 | 0.57 | 5.25 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.51 | 0.12 | 2.89 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.93 | 0.00 | 1.98 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.74 | 0.18 | 3.29 |
| 7d_30C | Seven days - 30 degrees Celsius | 2.15 | 0.29 | 4.02 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.512446 | no |
| 3d_25C | 7d_25C | 0.028871 | yes |
| 3d_25C | 7d_15C | 0.062138 | no |
| 3d_25C | 7d_30C | 0.180896 | no |
| 3d_25C | 10d_25C | 0.010735 | yes |
| 5d_25C | 7d_25C | 0.178456 | no |
| 5d_25C | 7d_15C | 0.319663 | no |
| 5d_25C | 7d_30C | 0.606329 | no |
| 5d_25C | 10d_25C | 0.046159 | yes |
| 7d_25C | 7d_15C | 0.843414 | no |
| 7d_25C | 7d_30C | 0.553728 | no |
| 7d_25C | 10d_25C | 0.459057 | no |
| 7d_15C | 7d_30C | 0.751178 | no |
| 7d_15C | 10d_25C | 0.308994 | no |
| 7d_30C | 10d_25C | 0.153953 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6516.t1 MRPSLSTWTLFLSHLGCSVAAPVLPILPHHLVARDTPFNSSLPNITIFATGGTIAGSASSNTATTGYTAGALGVD ILIQAVPELWNLSNVKGVQVANVDSGSITPEILLNLSSLIQEALDDPYCQGAVVTHGTDTLEESAIFLDLTIKTE KPVVVVGAMRPATAISADGPMNLLEAVTLAGSPDARGRGTMVVLNDRIGSAFYMTKTHSNSLDTFKAVEQGYLGF FLDTKPLFYYPPVLPNGRVYFNVSGATALPEVDILFGHQVLNPKLARSAVESGAKGLVLAGMGAGGWTNAGTSEI ENLVKKYGTQVVVSSRTMGGFVQTDGTGNMYSGQDLNPQKARIMLQLALYAGYGSKQLATLFGFAS* |
| Coding | >Pro_DTO377G3_2|g6516.t1 ATGCGTCCTTCTTTAAGCACGTGGACTCTTTTCCTATCCCACCTAGGATGCAGTGTAGCTGCTCCGGTACTACCT ATTCTCCCTCATCATCTTGTTGCGCGCGACACCCCCTTCAACAGCAGCCTTCCGAACATCACCATTTTCGCTACT GGAGGCACTATTGCCGGCTCTGCTTCCTCAAACACCGCGACCACGGGATACACCGCCGGTGCACTGGGCGTTGAT ATCCTTATCCAAGCCGTGCCTGAGCTCTGGAACCTCTCAAATGTCAAAGGTGTCCAGGTCGCTAATGTTGATTCG GGGTCCATCACCCCCGAGATTCTCCTGAACTTGTCATCGCTGATCCAAGAGGCTCTGGACGACCCATATTGCCAG GGAGCCGTCGTCACTCATGGAACAGATACTTTGGAGGAATCGGCCATCTTCCTGGACCTGACGATCAAGACGGAG AAGCCTGTCGTCGTGGTGGGCGCTATGCGGCCCGCAACAGCCATCAGCGCCGATGGACCCATGAACTTGCTGGAA GCCGTCACTCTAGCAGGCAGCCCCGATGCACGGGGCCGTGGGACCATGGTTGTGCTGAACGACCGTATCGGGAGC GCCTTCTACATGACCAAAACGCATTCAAATTCCCTAGACACCTTCAAGGCAGTTGAACAAGGCTACCTGGGCTTC TTCCTGGATACCAAGCCGCTGTTCTACTATCCTCCAGTCTTGCCCAATGGCCGTGTGTACTTCAACGTCTCGGGG GCCACGGCATTGCCGGAAGTGGACATCCTATTCGGGCACCAAGTACTCAACCCGAAGCTGGCTCGCTCTGCAGTA GAGAGTGGAGCAAAGGGTTTGGTCTTGGCTGGTATGGGGGCTGGGGGCTGGACAAACGCGGGAACAAGTGAGATT GAGAACTTGGTCAAGAAATACGGTACGCAAGTCGTGGTTTCCAGCAGGACGATGGGGGGCTTTGTCCAGACAGAC GGCACTGGAAATATGTACAGTGGACAGGACTTGAACCCCCAGAAGGCTCGTATTATGTTGCAACTTGCTCTTTAC GCAGGATATGGCTCTAAGCAGCTCGCCACATTGTTCGGGTTTGCATCTTGA |
| Transcript | >Pro_DTO377G3_2|g6516.t1 ATGCGTCCTTCTTTAAGCACGTGGACTCTTTTCCTATCCCACCTAGGATGCAGTGTAGCTGCTCCGGTACTACCT ATTCTCCCTCATCATCTTGTTGCGCGCGACACCCCCTTCAACAGCAGCCTTCCGAACATCACCATTTTCGCTACT GGAGGCACTATTGCCGGCTCTGCTTCCTCAAACACCGCGACCACGGGATACACCGCCGGTGCACTGGGCGTTGAT ATCCTTATCCAAGCCGTGCCTGAGCTCTGGAACCTCTCAAATGTCAAAGGTGTCCAGGTCGCTAATGTTGATTCG GGGTCCATCACCCCCGAGATTCTCCTGAACTTGTCATCGCTGATCCAAGAGGCTCTGGACGACCCATATTGCCAG GGAGCCGTCGTCACTCATGGAACAGATACTTTGGAGGAATCGGCCATCTTCCTGGACCTGACGATCAAGACGGAG AAGCCTGTCGTCGTGGTGGGCGCTATGCGGCCCGCAACAGCCATCAGCGCCGATGGACCCATGAACTTGCTGGAA GCCGTCACTCTAGCAGGCAGCCCCGATGCACGGGGCCGTGGGACCATGGTTGTGCTGAACGACCGTATCGGGAGC GCCTTCTACATGACCAAAACGCATTCAAATTCCCTAGACACCTTCAAGGCAGTTGAACAAGGCTACCTGGGCTTC TTCCTGGATACCAAGCCGCTGTTCTACTATCCTCCAGTCTTGCCCAATGGCCGTGTGTACTTCAACGTCTCGGGG GCCACGGCATTGCCGGAAGTGGACATCCTATTCGGGCACCAAGTACTCAACCCGAAGCTGGCTCGCTCTGCAGTA GAGAGTGGAGCAAAGGGTTTGGTCTTGGCTGGTATGGGGGCTGGGGGCTGGACAAACGCGGGAACAAGTGAGATT GAGAACTTGGTCAAGAAATACGGTACGCAAGTCGTGGTTTCCAGCAGGACGATGGGGGGCTTTGTCCAGACAGAC GGCACTGGAAATATGTACAGTGGACAGGACTTGAACCCCCAGAAGGCTCGTATTATGTTGCAACTTGCTCTTTAC GCAGGATATGGCTCTAAGCAGCTCGCCACATTGTTCGGGTTTGCATCTTGA |
| Gene | >Pro_DTO377G3_2|g6516.t1 ATGCGTCCTTCTTTAAGCACGTGGACTCTTTTCCTATCCCACCTAGGATGCAGTGTAGCTGCTCCGGTACTACCT ATTCTCCCTCATCATCTTGTTGCGCGCGACACCCCCTTCAACAGCAGCCTTCCGAACATCACCATTTTCGCTACT GGAGGCACTATTGCCGGCTCTGCTTCCTCAAACACCGCGACCACGGGATACACCGCCGGTGCACTGGGCGTTGAT ATCCTTATCCAAGCCGTGCCTGAGCTCTGGAACCTCTCAAATGTCAAAGGTGTCCAGGTCGCTAATGTTGATTCG GGGTCCATCACCCCCGAGATTCTCCTGAACTTGTCATCGCTGATCCAAGAGGCTCTGGACGACCCATATTGCCAG GGAGCCGTCGTCACTCATGGAACAGATACTTTGGAGGAATCGGCCATCTTCCTGGACCTGACGATCAAGACGGAG AAGCCTGTCGTCGTGGTGGGCGCTATGCGGCCCGCAACAGCCATCAGCGCCGATGGACCCATGAACTTGCTGGAA GCCGTCACTCTAGCAGGCAGCCCCGATGCACGGGGCCGTGGGACCATGGTTGTGCTGAACGACCGTATCGGGAGC GCCTTCTACATGACCAAAACGCATTCAAATTCCCTAGACACCTTCAAGGCAGTTGAACAAGGCTACCTGGGCTTC TTCCTGGATACCAAGCCGCTGTTCTACTATCCTCCAGTCTTGCCCAATGGCCGTGTGTACTTCAACGTCTCGGGG GCCACGGCATTGCCGGAAGTGGACATCCTATTCGGGCACCAAGTACTCAACCCGAAGCTGGCTCGCTCTGCAGTA GAGAGTGGAGCAAAGGGTTTGGTCTTGGCTGGTATGGGGGCTGGGGGCTGGACAAACGCGGGAACAAGTGAGATT GAGAACTTGGTCAAGAAATACGGTACGCAAGTCGTGGTTTCCAGCAGGACGATGGGGGGCTTTGTCCAGACAGAC GGCACTGGAAATATGTACAGTGGACAGGACTTGAACCCCCAGAAGGCTCGTATTATGTTGCAACTTGCTCTTTAC GCAGGATATGGCTCTAAGCAGCTCGCCACATTGTTCGGGTTTGCATCTTGA |