© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6508.t1 |
| Gene name | |
| Location | scaffold_17:407863..410802 |
| Strand | + |
| Gene length (bp) | 2939 |
| Transcript length (bp) | 2766 |
| Coding sequence length (bp) | 2766 |
| Protein length (aa) | 922 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02386 | TrkH | Cation transport protein | 8.2E-147 | 435 | 846 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008324 | cation transmembrane transporter activity | Yes |
| GO:0006812 | cation transport | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0006811 | ion transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 121 | 143 | 22 |
| 2 | 179 | 201 | 22 |
| 3 | 493 | 515 | 22 |
| 4 | 562 | 584 | 22 |
| 5 | 624 | 646 | 22 |
| 6 | 686 | 708 | 22 |
| 7 | 747 | 764 | 17 |
| 8 | 779 | 801 | 22 |
| Orthofinder run ID | 2 |
| Orthogroup | 6587 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6508.t1 MTVPYRTFSYSSPFISFLPSLRYARDYLYAKSWLNATRLRAASPRLLHETSPLGSARRDHMLEKFPSFREHPVST SPPLRPVPVLPARQRSGRSPFNMFSDSLHRAIAYKKKIPILNELHLNFIFLHYVYIISWVIIGSVIVYPGGNLDY IDALFQSAGAATQSGLNTVNLNDLRLYQQIVLYLMTCLCTPIFIHGAVVFVRLYWFEKRFQHVVSDARAMRRSRS RMGTVTDDGRTQENNINRAELGVSGRPIVVVRDHLGDARDTRVTDPASKKINSGMNTPELRGSSVESNSEETDTS SEPRFGLGSLKVPTHLNPEHHIAFLEKQRKDKGALRIPSPREYDRGGAPEALEEDVDHEEHPQNLSDHDSQHSPG SSSERLDRLGPLEEQHITINEPDISRSRGRGSTFPRLDTRPTLRETKDGNEVTTLGGANARNTFRQVFRSLTQER DHSTQPYLSWNATVARNSNFVDLTEEQRDELGGIEYRALKTLAVLLITYYVGFHLIGMVSMIGWIMTDTHWGDIV RADGVGRPWWGIFTAASAFNDLGFTLTPDSMNSFQRAIFPLLMLGFLIIIGNTAFPCMLRLMIWVLSKFTRQGSA LWEELKFLLDHPRRCFTLLFPRNATWWLFGILVALNGIDLIFFVILDLNDSAVTMLPPGIRVVDGFFQAAATRTA GFGIISLTDLHPAIQVSYLIMMYISVFPIAISMRRTNVYEEKSLGIYDAAEDDDDEETNAPTYIGAHLRRQLSFD LWYVFLGLFIISIAEGGKLQKNDHAFQLFTVLFEVVSAYGTVGLSFGYTGVNTSFSAQFNVVSKLVIIAMQLRGR HRGLPYALDRAVLLPSDALNRREAADGERRMRRRASNFSGVGSFAQSQSQSQSRNDLGHSSGMDSHDWQTQPTPN ADSVIHRPSAVHRSSTVQSDR* |
| Coding | >Pro_DTO377G3_2|g6508.t1 ATGACAGTACCATACCGTACTTTCTCTTATTCTTCCCCATTCATCTCCTTCCTACCTTCCCTCCGCTATGCCCGC GATTACCTCTACGCAAAATCGTGGCTCAATGCCACGCGGCTAAGAGCGGCCTCCCCCCGTCTCTTGCACGAAACC TCTCCGCTCGGTAGCGCTCGACGGGACCACATGTTGGAAAAATTCCCCTCCTTTCGAGAGCACCCCGTCTCGACA TCTCCCCCTTTGCGGCCAGTGCCAGTGCTCCCTGCTCGGCAACGGTCTGGCCGCAGTCCGTTCAATATGTTCTCG GATTCTCTCCACCGAGCGATAGCCTACAAGAAAAAGATCCCGATTCTAAACGAACTGCACCTCAATTTCATCTTT CTCCACTATGTCTACATCATATCCTGGGTTATCATCGGCTCGGTCATCGTTTACCCCGGTGGCAACCTCGACTAC ATCGATGCCCTTTTCCAATCCGCTGGCGCTGCCACCCAGAGCGGGTTGAACACGGTCAATCTGAATGACCTCCGG CTTTATCAACAGATCGTCTTATACCTAATGACATGTCTGTGCACACCGATCTTCATCCATGGCGCCGTGGTATTT GTTCGGTTATACTGGTTCGAGAAGCGCTTCCAACATGTGGTCAGTGACGCTCGGGCGATGCGACGGAGCCGATCC CGCATGGGAACCGTGACCGATGATGGGCGTACCCAGGAGAATAATATCAATCGTGCGGAGCTAGGAGTCAGCGGT CGACCCATCGTGGTGGTACGGGACCATTTAGGGGATGCCCGAGACACTCGAGTAACGGACCCGGCTAGCAAGAAA ATCAATTCGGGCATGAACACACCGGAACTCCGGGGAAGCAGTGTTGAATCCAACTCCGAAGAAACGGATACAAGC AGCGAACCTCGTTTTGGCCTCGGGAGCTTGAAGGTGCCAACCCATTTGAACCCCGAACACCACATCGCCTTCTTG GAAAAGCAGCGGAAGGATAAAGGAGCGTTGCGCATCCCGAGTCCCCGGGAGTATGACCGTGGTGGTGCGCCTGAG GCTTTGGAAGAAGACGTGGACCATGAGGAGCACCCTCAGAATTTGAGTGACCATGACAGCCAACATAGCCCCGGT TCAAGCTCCGAGCGGCTCGATCGACTGGGTCCACTTGAAGAACAGCACATCACCATCAACGAACCAGATATTTCA CGATCCCGTGGTCGCGGTAGTACGTTCCCTCGTCTGGATACTCGCCCTACTTTGCGGGAGACTAAAGATGGGAAT GAGGTTACCACCCTTGGCGGTGCTAACGCGAGGAACACATTCAGGCAGGTGTTCCGGTCTCTGACGCAAGAGCGT GACCATTCCACCCAACCATATCTCAGTTGGAATGCGACAGTGGCTCGTAACTCCAATTTCGTCGATTTAACGGAG GAGCAGCGTGATGAGTTGGGCGGTATCGAATACCGTGCACTCAAGACATTGGCCGTCCTTCTTATCACCTACTAC GTCGGCTTTCATCTCATCGGCATGGTTAGCATGATCGGTTGGATCATGACAGACACCCATTGGGGAGATATCGTC CGGGCTGATGGAGTTGGGCGGCCGTGGTGGGGAATCTTTACCGCTGCGTCGGCCTTCAACGATTTAGGTTTCACC TTGACACCTGACTCGATGAACTCTTTCCAAAGAGCCATTTTCCCTCTGCTCATGCTAGGGTTTCTAATCATCATC GGCAATACCGCCTTCCCATGCATGCTTCGTTTGATGATCTGGGTGCTTTCCAAATTCACCCGCCAGGGCTCTGCG CTATGGGAAGAGTTGAAGTTCCTTCTGGATCATCCCCGTCGATGCTTCACTCTATTGTTCCCCCGTAACGCCACT TGGTGGCTGTTTGGCATTCTCGTGGCCTTGAACGGCATTGATCTGATCTTCTTTGTCATCCTGGATCTCAACGAT TCTGCCGTCACTATGCTGCCACCCGGAATTCGAGTCGTGGACGGCTTTTTCCAGGCTGCTGCGACACGAACAGCC GGTTTTGGAATCATCAGTCTTACAGACCTTCACCCCGCCATCCAGGTTTCCTATTTGATCATGATGTATATCTCA GTCTTTCCCATCGCTATCTCTATGCGTCGAACCAATGTCTACGAAGAGAAGAGTTTGGGAATTTACGATGCCGCA GAGGATGATGATGACGAAGAGACAAATGCCCCCACATACATCGGAGCTCATTTGCGACGCCAATTGAGTTTCGAC TTGTGGTATGTCTTTTTGGGCCTGTTTATCATTTCTATTGCGGAAGGTGGAAAATTGCAGAAGAACGACCACGCT TTCCAGCTGTTCACTGTTTTGTTTGAAGTTGTCTCGGCATACGGTACTGTGGGTTTGTCGTTTGGATACACCGGC GTCAATACCTCCTTCTCGGCGCAGTTCAATGTAGTCTCCAAGTTGGTGATCATTGCTATGCAACTCCGCGGTCGC CACCGTGGCCTACCATATGCGCTCGACCGCGCCGTCCTTCTCCCCTCTGACGCCCTCAATCGACGTGAGGCCGCA GACGGAGAACGCCGCATGCGCCGTCGCGCATCCAACTTCAGTGGAGTTGGGTCTTTCGCCCAATCGCAATCGCAA TCCCAGTCGAGGAACGATCTTGGTCATTCTTCGGGTATGGACAGCCACGACTGGCAAACCCAGCCTACTCCCAAT GCAGACTCTGTGATACATCGTCCCTCGGCTGTCCATCGTTCCTCAACTGTCCAATCCGATCGGTAG |
| Transcript | >Pro_DTO377G3_2|g6508.t1 ATGACAGTACCATACCGTACTTTCTCTTATTCTTCCCCATTCATCTCCTTCCTACCTTCCCTCCGCTATGCCCGC GATTACCTCTACGCAAAATCGTGGCTCAATGCCACGCGGCTAAGAGCGGCCTCCCCCCGTCTCTTGCACGAAACC TCTCCGCTCGGTAGCGCTCGACGGGACCACATGTTGGAAAAATTCCCCTCCTTTCGAGAGCACCCCGTCTCGACA TCTCCCCCTTTGCGGCCAGTGCCAGTGCTCCCTGCTCGGCAACGGTCTGGCCGCAGTCCGTTCAATATGTTCTCG GATTCTCTCCACCGAGCGATAGCCTACAAGAAAAAGATCCCGATTCTAAACGAACTGCACCTCAATTTCATCTTT CTCCACTATGTCTACATCATATCCTGGGTTATCATCGGCTCGGTCATCGTTTACCCCGGTGGCAACCTCGACTAC ATCGATGCCCTTTTCCAATCCGCTGGCGCTGCCACCCAGAGCGGGTTGAACACGGTCAATCTGAATGACCTCCGG CTTTATCAACAGATCGTCTTATACCTAATGACATGTCTGTGCACACCGATCTTCATCCATGGCGCCGTGGTATTT GTTCGGTTATACTGGTTCGAGAAGCGCTTCCAACATGTGGTCAGTGACGCTCGGGCGATGCGACGGAGCCGATCC CGCATGGGAACCGTGACCGATGATGGGCGTACCCAGGAGAATAATATCAATCGTGCGGAGCTAGGAGTCAGCGGT CGACCCATCGTGGTGGTACGGGACCATTTAGGGGATGCCCGAGACACTCGAGTAACGGACCCGGCTAGCAAGAAA ATCAATTCGGGCATGAACACACCGGAACTCCGGGGAAGCAGTGTTGAATCCAACTCCGAAGAAACGGATACAAGC AGCGAACCTCGTTTTGGCCTCGGGAGCTTGAAGGTGCCAACCCATTTGAACCCCGAACACCACATCGCCTTCTTG GAAAAGCAGCGGAAGGATAAAGGAGCGTTGCGCATCCCGAGTCCCCGGGAGTATGACCGTGGTGGTGCGCCTGAG GCTTTGGAAGAAGACGTGGACCATGAGGAGCACCCTCAGAATTTGAGTGACCATGACAGCCAACATAGCCCCGGT TCAAGCTCCGAGCGGCTCGATCGACTGGGTCCACTTGAAGAACAGCACATCACCATCAACGAACCAGATATTTCA CGATCCCGTGGTCGCGGTAGTACGTTCCCTCGTCTGGATACTCGCCCTACTTTGCGGGAGACTAAAGATGGGAAT GAGGTTACCACCCTTGGCGGTGCTAACGCGAGGAACACATTCAGGCAGGTGTTCCGGTCTCTGACGCAAGAGCGT GACCATTCCACCCAACCATATCTCAGTTGGAATGCGACAGTGGCTCGTAACTCCAATTTCGTCGATTTAACGGAG GAGCAGCGTGATGAGTTGGGCGGTATCGAATACCGTGCACTCAAGACATTGGCCGTCCTTCTTATCACCTACTAC GTCGGCTTTCATCTCATCGGCATGGTTAGCATGATCGGTTGGATCATGACAGACACCCATTGGGGAGATATCGTC CGGGCTGATGGAGTTGGGCGGCCGTGGTGGGGAATCTTTACCGCTGCGTCGGCCTTCAACGATTTAGGTTTCACC TTGACACCTGACTCGATGAACTCTTTCCAAAGAGCCATTTTCCCTCTGCTCATGCTAGGGTTTCTAATCATCATC GGCAATACCGCCTTCCCATGCATGCTTCGTTTGATGATCTGGGTGCTTTCCAAATTCACCCGCCAGGGCTCTGCG CTATGGGAAGAGTTGAAGTTCCTTCTGGATCATCCCCGTCGATGCTTCACTCTATTGTTCCCCCGTAACGCCACT TGGTGGCTGTTTGGCATTCTCGTGGCCTTGAACGGCATTGATCTGATCTTCTTTGTCATCCTGGATCTCAACGAT TCTGCCGTCACTATGCTGCCACCCGGAATTCGAGTCGTGGACGGCTTTTTCCAGGCTGCTGCGACACGAACAGCC GGTTTTGGAATCATCAGTCTTACAGACCTTCACCCCGCCATCCAGGTTTCCTATTTGATCATGATGTATATCTCA GTCTTTCCCATCGCTATCTCTATGCGTCGAACCAATGTCTACGAAGAGAAGAGTTTGGGAATTTACGATGCCGCA GAGGATGATGATGACGAAGAGACAAATGCCCCCACATACATCGGAGCTCATTTGCGACGCCAATTGAGTTTCGAC TTGTGGTATGTCTTTTTGGGCCTGTTTATCATTTCTATTGCGGAAGGTGGAAAATTGCAGAAGAACGACCACGCT TTCCAGCTGTTCACTGTTTTGTTTGAAGTTGTCTCGGCATACGGTACTGTGGGTTTGTCGTTTGGATACACCGGC GTCAATACCTCCTTCTCGGCGCAGTTCAATGTAGTCTCCAAGTTGGTGATCATTGCTATGCAACTCCGCGGTCGC CACCGTGGCCTACCATATGCGCTCGACCGCGCCGTCCTTCTCCCCTCTGACGCCCTCAATCGACGTGAGGCCGCA GACGGAGAACGCCGCATGCGCCGTCGCGCATCCAACTTCAGTGGAGTTGGGTCTTTCGCCCAATCGCAATCGCAA TCCCAGTCGAGGAACGATCTTGGTCATTCTTCGGGTATGGACAGCCACGACTGGCAAACCCAGCCTACTCCCAAT GCAGACTCTGTGATACATCGTCCCTCGGCTGTCCATCGTTCCTCAACTGTCCAATCCGATCGGTAG |
| Gene | >Pro_DTO377G3_2|g6508.t1 ATGACAGTACCATACCGTACTGTAAGATTCCCGCATGCGTGATTTTTCCATCGCAGCTATTACCATTTCCTTTTT CTCAATTCGACCAGTTCTCTTATTCTTCCCCATTCATCTCCTTCCTACCTTCCCTCCGCTATGCCCGCGATTACC TCTACGCAAAATCGTGGCTCAATGCCACGCGGCTAAGAGCGGCCTCCCCCCGTCTCTTGCACGAAACCTCTCCGC TCGGTAGCGCTCGACGGGACCACATGTATGTATCGCGAAAAGCCAAACTCGAGATGTAAAAGCTAATGATGCAAT AGGTTGGAAAAATTCCCCTCCTTTCGAGAGCACCCCGTCTCGACATCTCCCCCTTTGCGGCCAGTGCCAGTGCTC CCTGCTCGGCAACGGTCTGGCCGCAGTCCGTTCAATATGTTCTCGGATTCTCTCCACCGAGCGATAGCCTACAAG AAAAAGATCCCGATTCTAAACGAACTGCACCTCAATTTCATCTTTCTCCACTATGTCTACATCATATCCTGGGTT ATCATCGGCTCGGTCATCGTTTACCCCGGTGGCAACCTCGACTACATCGATGCCCTTTTCCAATCCGCTGGCGCT GCCACCCAGAGCGGGTTGAACACGGTCAATCTGAATGACCTCCGGCTTTATCAACAGATCGTCTTATACCTAATG ACATGTCTGTGCACACCGATCTTCATCCATGGCGCCGTGGTATTTGTTCGGTTATACTGGTTCGAGAAGCGCTTC CAACATGTGGTCAGTGACGCTCGGGCGATGCGACGGAGCCGATCCCGCATGGGAACCGTGACCGATGATGGGCGT ACCCAGGAGAATAATATCAATCGTGCGGAGCTAGGAGTCAGCGGTCGACCCATCGTGGTGGTACGGGACCATTTA GGGGATGCCCGAGACACTCGAGTAACGGACCCGGCTAGCAAGAAAATCAATTCGGGCATGAACACACCGGAACTC CGGGGAAGCAGTGTTGAATCCAACTCCGAAGAAACGGATACAAGCAGCGAACCTCGTTTTGGCCTCGGGAGCTTG AAGGTGCCAACCCATTTGAACCCCGAACACCACATCGCCTTCTTGGAAAAGCAGCGGAAGGATAAAGGAGCGTTG CGCATCCCGAGTCCCCGGGAGTATGACCGTGGTGGTGCGCCTGAGGCTTTGGAAGAAGACGTGGACCATGAGGAG CACCCTCAGAATTTGAGTGACCATGACAGCCAACATAGCCCCGGTTCAAGCTCCGAGCGGCTCGATCGACTGGGT CCACTTGAAGAACAGCACATCACCATCAACGAACCAGATATTTCACGATCCCGTGGTCGCGGTAGTACGTTCCCT CGTCTGGATACTCGCCCTACTTTGCGGGAGACTAAAGATGGGAATGAGGTTACCACCCTTGGCGGTGCTAACGCG AGGAACACATTCAGGCAGGTGTTCCGGTCTCTGACGCAAGAGCGTGACCATTCCACCCAACCATATCTCAGTTGG AATGCGACAGTGGCTCGTAACTCCAATTTCGTCGATTTAACGGAGGAGCAGCGTGATGAGTTGGGCGGTATCGAA TACCGTGCACTCAAGACATTGGCCGTCCTTCTTATCACCTACTACGTCGGCTTTCATCTCATCGGCATGGTTAGC ATGATCGGTTGGATCATGACAGACACCCATTGGGGAGATATCGTCCGGGCTGATGGAGTTGGGCGGCCGTGGTGG GGAATCTTTACCGCTGCGTCGGCCTTCAACGATTTAGGTTTCACCTTGACACCTGACTCGATGAACTCTTTCCAA AGAGCCATTTTCCCTCTGCTCATGCTAGGGTTTCTAATCATCATCGGCAATACCGCCTTCCCATGCATGCTTCGT TTGATGATCTGGGTGCTTTCCAAATTCACCCGCCAGGGCTCTGCGCTATGGGAAGAGTTGAAGTTCCTTCTGGAT CATCCCCGTCGATGCTTCACTCTATTGTTCCCCCGTAACGCCACTTGGTGGCTGTTTGGCATTCTCGTGGCCTTG AACGGCATTGATCTGATCTTCTTTGTCATCCTGGATGTGAGTTTGTTGTCTCCTTCTCTTGTGCGACTTCCACTG ACCATGCTTTTTAGCTCAACGATTCTGCCGTCACTATGCTGCCACCCGGAATTCGAGTCGTGGACGGCTTTTTCC AGGCTGCTGCGACACGAACAGCCGGTTTTGGAATCATCAGTCTTACAGACCTTCACCCCGCCATCCAGGTTTCCT ATTTGATCATGATGTATATCTCAGTCTTTCCCATCGCTATCTCTATGCGTCGAACCAATGTCTACGAAGAGAAGA GTTTGGGAATTTACGATGCCGCAGAGGATGATGATGACGAAGAGACAAATGCCCCCACATACATCGGAGCTCATT TGCGACGCCAATTGAGTTTCGACTTGTGGTATGTCTTTTTGGGCCTGTTTATCATTTCTATTGCGGAAGGTGGAA AATTGCAGAAGAACGACCACGCTTTCCAGCTGTTCACTGTTTTGTTTGAAGTTGTCTCGGCATACGGTACTGTGG GTTTGTCGTTTGGATACACCGGCGTCAATACCTCCTTCTCGGCGCAGTTCAATGTAGTCTCCAAGTTGGTGATCA TTGCTATGCAACTCCGCGGTCGCCACCGTGGCCTACCATATGCGCTCGACCGCGCCGTCCTTCTCCCCTCTGACG CCCTCAATCGACGTGAGGCCGCAGACGGAGAACGCCGCATGCGCCGTCGCGCATCCAACTTCAGTGGAGTTGGGT CTTTCGCCCAATCGCAATCGCAATCCCAGTCGAGGAACGATCTTGGTCATTCTTCGGGTATGGACAGCCACGACT GGCAAACCCAGCCTACTCCCAATGCAGACTCTGTGATACATCGTCCCTCGGCTGTCCATCGTTCCTCAACTGTCC AATCCGATCGGTAG |