© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6503.t1 |
| Gene name | |
| Location | scaffold_17:389685..391491 |
| Strand | - |
| Gene length (bp) | 1806 |
| Transcript length (bp) | 1806 |
| Coding sequence length (bp) | 1806 |
| Protein length (aa) | 602 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00144 | Beta-lactamase | Beta-lactamase | 9.0E-27 | 105 | 431 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.76 | 0.75 | 4.78 |
| 5d_25C | Five days - 25 degrees Celsius | 3.89 | 1.25 | 6.53 |
| 7d_25C | Seven days - 25 degrees Celsius | 7.14 | 2.89 | 11.39 |
| 10d_25C | Ten days - 25 degrees Celsius | 10.98 | 5.01 | 16.96 |
| 7d_15C | Seven days - 15 degrees Celsius | 8.61 | 3.69 | 13.54 |
| 7d_30C | Seven days - 30 degrees Celsius | 5.12 | 1.82 | 8.42 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.452660 | no |
| 3d_25C | 7d_25C | 0.004840 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.113673 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.080925 | no |
| 5d_25C | 7d_15C | 0.017204 | yes |
| 5d_25C | 7d_30C | 0.528194 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.637057 | no |
| 7d_25C | 7d_30C | 0.381345 | no |
| 7d_25C | 10d_25C | 0.179445 | no |
| 7d_15C | 7d_30C | 0.119453 | no |
| 7d_15C | 10d_25C | 0.493839 | no |
| 7d_30C | 10d_25C | 0.012609 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6503.t1 MRPNYVLTGLLCLPAAAFANLLGPSYPPPRDLSSNHSRVAASWKNLTSQLNTVLADNQANKSSGVFALKNLTFSA GLFSTLDPKAKDLQLHHTASEVANSPVGVNKVDGNSIYKVASVSKLFTVLAGLIELKPRDWDRPLTDIFPFLAER VRKQHDKFRLVYDVQWDKVTLKSLAGQMSGIPHGATEEFLQTFLLYKYLEHSHNPALTDPNFYGLPPLNGSDISL WPSCLGEQTQGCNPVSWDVAYAPRPPVYLPWTSPEYANGGYIFLGLAISNLTGKTMDEWYSESIFEPLGLKSTYS STPGNSTRPHSVTSEALDEQFIPDGGATTPSGGLFSTINDLSKLGVALLNSTLLPSEKTREWMKPITHTSSLRYS VGSPWEIHRYVHAGSGVVTDLYTKLGDSGYYGGIVVVIPDFDAGFTLLSASTQSSRSSEALLAIDLIVDAILPAL MEQAAAEAVQKFAGTYKAEDLNSSLTLAVVPPTQPAPGLNITSWISNGTDITALVSTLLGGVGSRLVPSIISEQA SGEIAFRGYTATQGRNPGVGSSSSLFSSFYDLNDWTMLDQLTWGGITTSLFVFDVEQNGTVKSVTPGAYRVKMTK K* |
| Coding | >Pro_DTO377G3_2|g6503.t1 ATGCGACCGAATTACGTGCTCACCGGCTTGCTTTGCCTCCCGGCAGCGGCTTTTGCCAACCTTCTAGGACCGTCA TACCCACCTCCTAGGGACTTGTCTAGCAATCACAGTCGAGTCGCCGCCAGTTGGAAGAACCTAACTTCTCAACTC AACACCGTCCTCGCCGATAACCAGGCCAACAAAAGCAGTGGAGTCTTTGCGCTGAAGAACCTCACATTCTCTGCT GGGTTATTTTCCACGCTTGACCCGAAAGCCAAAGATCTTCAATTACATCACACCGCCAGTGAGGTAGCAAACTCC CCGGTTGGGGTGAATAAGGTGGATGGAAACAGCATTTACAAGGTTGCCAGTGTGTCGAAACTCTTCACAGTCCTT GCTGGACTTATAGAGCTGAAACCTCGGGACTGGGACCGTCCACTTACCGACATCTTCCCATTCTTGGCCGAGCGT GTTCGGAAGCAACATGACAAGTTCCGGCTTGTCTATGATGTCCAATGGGACAAAGTCACCCTCAAATCCCTTGCG GGTCAGATGAGCGGCATACCCCATGGTGCTACAGAAGAATTCCTACAAACCTTTCTTCTATACAAGTATCTCGAA CACTCTCACAATCCCGCGTTGACTGATCCAAACTTCTACGGTCTCCCACCGCTGAACGGGAGTGACATATCTTTA TGGCCATCTTGCTTGGGTGAACAGACCCAGGGCTGCAATCCAGTCTCCTGGGATGTGGCATACGCCCCAAGGCCC CCAGTTTACCTTCCCTGGACGAGCCCCGAGTATGCAAATGGCGGCTATATCTTCCTCGGTCTCGCGATTTCAAAT CTCACGGGAAAGACCATGGACGAATGGTATAGTGAATCGATCTTCGAACCTCTGGGATTGAAGTCCACTTACTCG TCAACCCCTGGCAACTCCACCCGCCCTCATTCCGTCACATCGGAGGCTCTTGATGAGCAGTTCATCCCTGATGGA GGCGCTACAACCCCCTCTGGTGGATTATTCTCTACAATCAATGATCTTTCCAAGCTTGGTGTAGCCCTCTTGAAT TCCACCCTCCTTCCCTCCGAAAAGACACGGGAATGGATGAAGCCAATCACTCACACCTCAAGTTTACGCTACTCG GTCGGCTCACCATGGGAGATCCATCGATACGTCCACGCGGGATCAGGCGTGGTCACTGACCTATACACGAAACTC GGAGACTCAGGATACTACGGTGGCATCGTGGTCGTGATACCGGACTTCGACGCCGGCTTCACTCTCCTCTCAGCC AGCACGCAATCCAGCCGCAGCAGCGAGGCGCTCTTGGCGATCGACCTTATTGTCGATGCTATACTCCCGGCGCTT ATGGAGCAAGCCGCAGCAGAGGCAGTGCAGAAGTTCGCCGGCACATACAAAGCCGAAGACCTGAATTCGTCATTG ACACTCGCTGTTGTGCCACCTACCCAGCCCGCGCCTGGTTTGAATATCACTTCGTGGATTAGCAATGGGACAGAT ATCACGGCTCTAGTGTCTACACTCCTTGGTGGTGTCGGGTCACGACTTGTGCCGTCTATTATCTCCGAACAGGCC AGTGGGGAAATCGCTTTCCGGGGATATACTGCAACTCAGGGTCGGAATCCCGGAGTTGGTTCCTCTTCAAGTCTT TTCTCTTCGTTCTACGATCTCAACGACTGGACTATGCTGGACCAGTTGACCTGGGGTGGTATTACTACCTCGCTT TTCGTTTTTGACGTCGAGCAAAATGGAACTGTCAAGTCGGTGACACCAGGTGCCTACAGAGTGAAGATGACAAAG AAGTGA |
| Transcript | >Pro_DTO377G3_2|g6503.t1 ATGCGACCGAATTACGTGCTCACCGGCTTGCTTTGCCTCCCGGCAGCGGCTTTTGCCAACCTTCTAGGACCGTCA TACCCACCTCCTAGGGACTTGTCTAGCAATCACAGTCGAGTCGCCGCCAGTTGGAAGAACCTAACTTCTCAACTC AACACCGTCCTCGCCGATAACCAGGCCAACAAAAGCAGTGGAGTCTTTGCGCTGAAGAACCTCACATTCTCTGCT GGGTTATTTTCCACGCTTGACCCGAAAGCCAAAGATCTTCAATTACATCACACCGCCAGTGAGGTAGCAAACTCC CCGGTTGGGGTGAATAAGGTGGATGGAAACAGCATTTACAAGGTTGCCAGTGTGTCGAAACTCTTCACAGTCCTT GCTGGACTTATAGAGCTGAAACCTCGGGACTGGGACCGTCCACTTACCGACATCTTCCCATTCTTGGCCGAGCGT GTTCGGAAGCAACATGACAAGTTCCGGCTTGTCTATGATGTCCAATGGGACAAAGTCACCCTCAAATCCCTTGCG GGTCAGATGAGCGGCATACCCCATGGTGCTACAGAAGAATTCCTACAAACCTTTCTTCTATACAAGTATCTCGAA CACTCTCACAATCCCGCGTTGACTGATCCAAACTTCTACGGTCTCCCACCGCTGAACGGGAGTGACATATCTTTA TGGCCATCTTGCTTGGGTGAACAGACCCAGGGCTGCAATCCAGTCTCCTGGGATGTGGCATACGCCCCAAGGCCC CCAGTTTACCTTCCCTGGACGAGCCCCGAGTATGCAAATGGCGGCTATATCTTCCTCGGTCTCGCGATTTCAAAT CTCACGGGAAAGACCATGGACGAATGGTATAGTGAATCGATCTTCGAACCTCTGGGATTGAAGTCCACTTACTCG TCAACCCCTGGCAACTCCACCCGCCCTCATTCCGTCACATCGGAGGCTCTTGATGAGCAGTTCATCCCTGATGGA GGCGCTACAACCCCCTCTGGTGGATTATTCTCTACAATCAATGATCTTTCCAAGCTTGGTGTAGCCCTCTTGAAT TCCACCCTCCTTCCCTCCGAAAAGACACGGGAATGGATGAAGCCAATCACTCACACCTCAAGTTTACGCTACTCG GTCGGCTCACCATGGGAGATCCATCGATACGTCCACGCGGGATCAGGCGTGGTCACTGACCTATACACGAAACTC GGAGACTCAGGATACTACGGTGGCATCGTGGTCGTGATACCGGACTTCGACGCCGGCTTCACTCTCCTCTCAGCC AGCACGCAATCCAGCCGCAGCAGCGAGGCGCTCTTGGCGATCGACCTTATTGTCGATGCTATACTCCCGGCGCTT ATGGAGCAAGCCGCAGCAGAGGCAGTGCAGAAGTTCGCCGGCACATACAAAGCCGAAGACCTGAATTCGTCATTG ACACTCGCTGTTGTGCCACCTACCCAGCCCGCGCCTGGTTTGAATATCACTTCGTGGATTAGCAATGGGACAGAT ATCACGGCTCTAGTGTCTACACTCCTTGGTGGTGTCGGGTCACGACTTGTGCCGTCTATTATCTCCGAACAGGCC AGTGGGGAAATCGCTTTCCGGGGATATACTGCAACTCAGGGTCGGAATCCCGGAGTTGGTTCCTCTTCAAGTCTT TTCTCTTCGTTCTACGATCTCAACGACTGGACTATGCTGGACCAGTTGACCTGGGGTGGTATTACTACCTCGCTT TTCGTTTTTGACGTCGAGCAAAATGGAACTGTCAAGTCGGTGACACCAGGTGCCTACAGAGTGAAGATGACAAAG AAGTGA |
| Gene | >Pro_DTO377G3_2|g6503.t1 ATGCGACCGAATTACGTGCTCACCGGCTTGCTTTGCCTCCCGGCAGCGGCTTTTGCCAACCTTCTAGGACCGTCA TACCCACCTCCTAGGGACTTGTCTAGCAATCACAGTCGAGTCGCCGCCAGTTGGAAGAACCTAACTTCTCAACTC AACACCGTCCTCGCCGATAACCAGGCCAACAAAAGCAGTGGAGTCTTTGCGCTGAAGAACCTCACATTCTCTGCT GGGTTATTTTCCACGCTTGACCCGAAAGCCAAAGATCTTCAATTACATCACACCGCCAGTGAGGTAGCAAACTCC CCGGTTGGGGTGAATAAGGTGGATGGAAACAGCATTTACAAGGTTGCCAGTGTGTCGAAACTCTTCACAGTCCTT GCTGGACTTATAGAGCTGAAACCTCGGGACTGGGACCGTCCACTTACCGACATCTTCCCATTCTTGGCCGAGCGT GTTCGGAAGCAACATGACAAGTTCCGGCTTGTCTATGATGTCCAATGGGACAAAGTCACCCTCAAATCCCTTGCG GGTCAGATGAGCGGCATACCCCATGGTGCTACAGAAGAATTCCTACAAACCTTTCTTCTATACAAGTATCTCGAA CACTCTCACAATCCCGCGTTGACTGATCCAAACTTCTACGGTCTCCCACCGCTGAACGGGAGTGACATATCTTTA TGGCCATCTTGCTTGGGTGAACAGACCCAGGGCTGCAATCCAGTCTCCTGGGATGTGGCATACGCCCCAAGGCCC CCAGTTTACCTTCCCTGGACGAGCCCCGAGTATGCAAATGGCGGCTATATCTTCCTCGGTCTCGCGATTTCAAAT CTCACGGGAAAGACCATGGACGAATGGTATAGTGAATCGATCTTCGAACCTCTGGGATTGAAGTCCACTTACTCG TCAACCCCTGGCAACTCCACCCGCCCTCATTCCGTCACATCGGAGGCTCTTGATGAGCAGTTCATCCCTGATGGA GGCGCTACAACCCCCTCTGGTGGATTATTCTCTACAATCAATGATCTTTCCAAGCTTGGTGTAGCCCTCTTGAAT TCCACCCTCCTTCCCTCCGAAAAGACACGGGAATGGATGAAGCCAATCACTCACACCTCAAGTTTACGCTACTCG GTCGGCTCACCATGGGAGATCCATCGATACGTCCACGCGGGATCAGGCGTGGTCACTGACCTATACACGAAACTC GGAGACTCAGGATACTACGGTGGCATCGTGGTCGTGATACCGGACTTCGACGCCGGCTTCACTCTCCTCTCAGCC AGCACGCAATCCAGCCGCAGCAGCGAGGCGCTCTTGGCGATCGACCTTATTGTCGATGCTATACTCCCGGCGCTT ATGGAGCAAGCCGCAGCAGAGGCAGTGCAGAAGTTCGCCGGCACATACAAAGCCGAAGACCTGAATTCGTCATTG ACACTCGCTGTTGTGCCACCTACCCAGCCCGCGCCTGGTTTGAATATCACTTCGTGGATTAGCAATGGGACAGAT ATCACGGCTCTAGTGTCTACACTCCTTGGTGGTGTCGGGTCACGACTTGTGCCGTCTATTATCTCCGAACAGGCC AGTGGGGAAATCGCTTTCCGGGGATATACTGCAACTCAGGGTCGGAATCCCGGAGTTGGTTCCTCTTCAAGTCTT TTCTCTTCGTTCTACGATCTCAACGACTGGACTATGCTGGACCAGTTGACCTGGGGTGGTATTACTACCTCGCTT TTCGTTTTTGACGTCGAGCAAAATGGAACTGTCAAGTCGGTGACACCAGGTGCCTACAGAGTGAAGATGACAAAG AAGTGA |