© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6502.t1 |
| Gene name | |
| Location | scaffold_17:388357..389549 |
| Strand | + |
| Gene length (bp) | 1192 |
| Transcript length (bp) | 813 |
| Coding sequence length (bp) | 813 |
| Protein length (aa) | 271 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03328 | HpcH_HpaI | HpcH/HpaI aldolase/citrate lyase family | 1.3E-36 | 41 | 245 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 30 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 14.03 | 5.03 | 23.02 |
| 5d_25C | Five days - 25 degrees Celsius | 7.69 | 2.21 | 13.17 |
| 7d_25C | Seven days - 25 degrees Celsius | 7.76 | 2.11 | 13.42 |
| 10d_25C | Ten days - 25 degrees Celsius | 5.53 | 1.27 | 9.78 |
| 7d_15C | Seven days - 15 degrees Celsius | 13.90 | 4.97 | 22.82 |
| 7d_30C | Seven days - 30 degrees Celsius | 10.40 | 3.06 | 17.73 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.121800 | no |
| 3d_25C | 7d_25C | 0.125274 | no |
| 3d_25C | 7d_15C | 0.987217 | no |
| 3d_25C | 7d_30C | 0.503469 | no |
| 3d_25C | 10d_25C | 0.015268 | yes |
| 5d_25C | 7d_25C | 0.990269 | no |
| 5d_25C | 7d_15C | 0.129483 | no |
| 5d_25C | 7d_30C | 0.539536 | no |
| 5d_25C | 10d_25C | 0.516577 | no |
| 7d_25C | 7d_15C | 0.124534 | no |
| 7d_25C | 7d_30C | 0.543485 | no |
| 7d_25C | 10d_25C | 0.489019 | no |
| 7d_15C | 7d_30C | 0.515316 | no |
| 7d_15C | 10d_25C | 0.019886 | yes |
| 7d_30C | 10d_25C | 0.142247 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6502.t1 MSSIILRSALETTPVAYGFWLTLPSAAVAKTILRRSPEFSEGGFSWVLVDAEHGLITDTHYYELTNAVGHEGASP IIRVPWPEEWMIKRALDAGAHGVMTPMCHSAEDAAKVVSYCKYPPVGVRGYGPMFTPHSFPGVKPADYDDKTHGE VLVIVQIESRPGVENVEEIAKVEGLDVLFIGPFDLAKQMRVTRGGEEHEAAIQRVLNAARAAGKKAAIFCSDGDD ALRRTQQGFDMVSITTDVAVFGDGMLNELEKAKGTSKVQGKRDGY* |
| Coding | >Pro_DTO377G3_2|g6502.t1 ATGTCTTCCATCATACTCCGCTCAGCTTTGGAAACCACGCCAGTGGCATACGGCTTCTGGTTAACCCTCCCCAGT GCCGCCGTCGCAAAGACAATTCTCCGCCGCAGTCCCGAGTTCTCGGAAGGTGGATTCAGCTGGGTTCTAGTTGAC GCTGAACATGGATTGATTACCGACACCCACTATTATGAGCTCACTAATGCCGTCGGCCACGAGGGTGCTAGTCCT ATTATCCGTGTGCCCTGGCCCGAAGAGTGGATGATCAAGCGTGCTCTCGATGCCGGCGCCCACGGAGTCATGACT CCTATGTGTCACTCTGCAGAGGACGCTGCCAAGGTCGTTAGCTACTGCAAGTACCCGCCTGTCGGAGTCCGTGGA TACGGGCCTATGTTTACGCCGCATTCATTTCCCGGCGTGAAGCCCGCCGACTATGACGACAAGACGCACGGTGAA GTCCTCGTTATTGTGCAGATTGAGTCGCGGCCGGGTGTTGAGAATGTAGAGGAGATTGCTAAAGTCGAGGGACTT GATGTTTTGTTTATTGGACCCTTCGACCTTGCTAAGCAGATGCGTGTCACCCGCGGTGGCGAGGAGCACGAGGCT GCTATCCAACGTGTCTTGAATGCTGCTAGAGCTGCAGGAAAAAAGGCTGCTATCTTCTGCTCCGATGGTGATGAT GCTCTTCGCCGCACACAGCAGGGCTTTGATATGGTTTCCATTACCACCGATGTTGCTGTCTTCGGTGACGGGATG CTCAACGAATTAGAGAAGGCTAAGGGCACTTCTAAGGTCCAAGGAAAGCGGGACGGGTATTGA |
| Transcript | >Pro_DTO377G3_2|g6502.t1 ATGTCTTCCATCATACTCCGCTCAGCTTTGGAAACCACGCCAGTGGCATACGGCTTCTGGTTAACCCTCCCCAGT GCCGCCGTCGCAAAGACAATTCTCCGCCGCAGTCCCGAGTTCTCGGAAGGTGGATTCAGCTGGGTTCTAGTTGAC GCTGAACATGGATTGATTACCGACACCCACTATTATGAGCTCACTAATGCCGTCGGCCACGAGGGTGCTAGTCCT ATTATCCGTGTGCCCTGGCCCGAAGAGTGGATGATCAAGCGTGCTCTCGATGCCGGCGCCCACGGAGTCATGACT CCTATGTGTCACTCTGCAGAGGACGCTGCCAAGGTCGTTAGCTACTGCAAGTACCCGCCTGTCGGAGTCCGTGGA TACGGGCCTATGTTTACGCCGCATTCATTTCCCGGCGTGAAGCCCGCCGACTATGACGACAAGACGCACGGTGAA GTCCTCGTTATTGTGCAGATTGAGTCGCGGCCGGGTGTTGAGAATGTAGAGGAGATTGCTAAAGTCGAGGGACTT GATGTTTTGTTTATTGGACCCTTCGACCTTGCTAAGCAGATGCGTGTCACCCGCGGTGGCGAGGAGCACGAGGCT GCTATCCAACGTGTCTTGAATGCTGCTAGAGCTGCAGGAAAAAAGGCTGCTATCTTCTGCTCCGATGGTGATGAT GCTCTTCGCCGCACACAGCAGGGCTTTGATATGGTTTCCATTACCACCGATGTTGCTGTCTTCGGTGACGGGATG CTCAACGAATTAGAGAAGGCTAAGGGCACTTCTAAGGTCCAAGGAAAGCGGGACGGGTATTGA |
| Gene | >Pro_DTO377G3_2|g6502.t1 ATGTCTTCCATCATACTCCGCTCAGCTTTGGAAACCACGCCAGTGGCATACGGCTTCTGGTTAACGTATGTTTAC ACCCCGCATTTGGAGAGGGGCATCACCATCCCCCGCTGCTCTTCTCAACCTCAAAGCTGTATCCAACAAGAGGAG AAGGAATCAAGCTAACTGGCCTTCTACCACAGCCTCCCCAGTGCCGCCGTCGCAAAGACAATTCTCCGCCGCAGT CCCGAGTTCTCGGAAGGTGGATTCAGCTGGGTTCTAGTTGACGCTGAACATGGATTGATTACCGACACCCACTAT TATGAGGTTTGTCATTCGAGTGAATTGAACTCGAGAATTTATTATTGACAATCACATCTAGCTCACTAATGCCGT CGGCCACGAGGGTGCTAGTCCTATTATCCGTGTGCCCTGGCCCGAAGAGTGGATGATCAAGCGTGCTCTCGATGC CGGCGCCCACGGAGTCATGACTCCTATGTGTCACTCTGCAGTATGTGTAACCCGGACCGCTGCGTTCGCACTTTT CTCTTTATCTGTCGGATCTGTATCTCAAATGCTAACACCCGCTTTTCTGCGTCTAATAGGAGGACGCTGCCAAGG TCGTTAGCTACTGCAAGTACCCGCCTGTCGGAGTCCGTGGATACGGGCCTATGTTTACGCCGCATTCATTTCCCG GCGTGAAGCCCGCCGACTATGACGACAAGACGCACGGTGAAGTCCTCGTTATTGTGCAGATTGAGTCGCGGCCGG GTGTTGAGAATGTAGAGGAGATTGCTAAAGTCGAGGGACTTGATGTTTTGTTTATTGGTGAGATTGGACCTTTCT GTTTATGGTTTGTGGAATTGGCTAACGGGTTTTTCCTAGGACCCTTCGACCTTGCTAAGCAGATGCGTGTCACCC GCGGTGGCGAGGAGCACGAGGCTGCTATCCAACGTGTCTTGAATGCTGCTAGAGCTGCAGGAAAAAAGGCTGCTA TCTTCTGTATGTGTTCTCATTTCCGATGTTCCATGGCTCATGTCTAATATTGCGTTTTTTAGGCTCCGATGGTGA TGATGCTCTTCGCCGCACACAGCAGGGCTTTGATATGGTTTCCATTACCACCGATGTTGCTGTCTTCGGTGACGG GATGCTCAACGAATTAGAGAAGGCTAAGGGCACTTCTAAGGTCCAAGGAAAGCGGGACGGGTATTGA |