© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g650.t1 |
| Gene name | |
| Location | scaffold_01:1666431..1667819 |
| Strand | - |
| Gene length (bp) | 1388 |
| Transcript length (bp) | 1326 |
| Coding sequence length (bp) | 1326 |
| Protein length (aa) | 442 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03798 | TRAM_LAG1_CLN8 | TLC domain | 5.4E-37 | 166 | 371 |
| PF08390 | TRAM1 | TRAM1-like protein | 1.3E-23 | 100 | 161 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 69 | 91 | 22 |
| 2 | 127 | 144 | 17 |
| 3 | 171 | 188 | 17 |
| 4 | 251 | 273 | 22 |
| 5 | 294 | 311 | 17 |
| 6 | 348 | 370 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g650.t1 MVRPRRTSALGVDIRGDTSAPAMSTMNEVSPIEPSSPFLKQFDVAHKQASKAQTKRRRSRSLLHRFADTCLRYTW LLPLIVMLFLLGLYALNPTTSNPMHSAIFLSYPQPPKTPGGPIMYGKGKKDIAFVAFYTIVLSFTREFIMQQMIR PFAVWCGIRGKGKTARFMEQAYTAVYFGVFGPFGLYVMKRSTIWYFNTTAMFEGFPHREHEGLFKAYYLLEASYW AQQAIVLLLQLEKPRKDFKELVGHHIITLALIALSYRFHFTYMGLAVYITHDISDFFLATSKTLNYLDAYITAPY FAMFVGWWIYLRHVLNLKILWAVLTEFRTVGPFELNWETQQYKCWISQYITFSLLASLQAVNLFWLFLILRILSN YIFTNVAKDERSEDEEEEEALESVNATKAIASGADQTGKENHAPQVLLNGEPVTEQRGPRTRSRKA* |
| Coding | >Pro_DTO377G3_2|g650.t1 ATGGTTCGCCCCCGGCGAACATCAGCCTTGGGCGTGGACATTCGGGGTGACACTAGTGCGCCAGCGATGTCCACG ATGAACGAAGTGAGTCCTATCGAGCCATCATCGCCATTTCTGAAGCAATTCGATGTCGCACACAAACAGGCCAGC AAGGCGCAGACCAAACGACGTCGCAGTCGCTCCCTCCTCCACCGCTTCGCGGATACCTGTCTGCGATACACATGG CTCCTGCCGCTTATCGTGATGCTGTTCCTGCTCGGGTTGTACGCGCTTAACCCCACAACCTCGAACCCGATGCAC AGCGCGATCTTCTTGTCCTACCCGCAGCCCCCCAAGACTCCCGGTGGACCCATCATGTATGGCAAAGGCAAAAAG GATATTGCGTTCGTGGCGTTCTACACGATCGTGCTGTCGTTCACGCGCGAATTTATTATGCAGCAGATGATCCGC CCCTTTGCGGTGTGGTGTGGTATCCGTGGGAAGGGGAAAACGGCTCGGTTCATGGAGCAAGCGTATACGGCCGTG TACTTTGGTGTATTCGGGCCGTTTGGTCTGTACGTGATGAAGCGCTCGACTATCTGGTACTTCAATACGACGGCG ATGTTTGAGGGCTTCCCGCACCGCGAGCACGAGGGTCTGTTCAAGGCGTACTACCTGCTCGAGGCGAGTTATTGG GCTCAGCAGGCGATTGTATTGCTGCTGCAGTTGGAGAAGCCCCGCAAGGACTTCAAGGAGCTTGTTGGTCACCAT ATTATCACGCTTGCGCTTATTGCGCTGAGCTACCGCTTCCACTTCACGTACATGGGCTTGGCGGTGTATATCACG CACGATATCTCCGACTTCTTTTTGGCCACCTCCAAGACGCTCAATTATCTGGATGCGTATATCACCGCGCCATAC TTTGCCATGTTCGTTGGATGGTGGATTTACCTGCGTCATGTGCTGAACCTGAAGATCCTCTGGGCTGTTCTGACC GAGTTCCGCACTGTTGGACCCTTCGAGCTAAACTGGGAGACACAGCAGTACAAGTGCTGGATCAGTCAGTACATC ACCTTTTCGCTGCTCGCCAGTTTGCAGGCTGTCAACCTGTTCTGGCTGTTCCTGATCCTGCGCATCTTGTCAAAC TACATCTTCACCAATGTCGCAAAAGACGAGCGTAGCGAGGACGAAGAGGAAGAGGAAGCGCTAGAGTCTGTCAAT GCGACCAAGGCAATTGCCAGTGGCGCAGACCAGACTGGCAAGGAGAACCACGCTCCTCAGGTTCTGCTCAACGGC GAGCCTGTCACTGAACAGCGTGGTCCTCGGACTCGCAGCAGAAAGGCATAA |
| Transcript | >Pro_DTO377G3_2|g650.t1 ATGGTTCGCCCCCGGCGAACATCAGCCTTGGGCGTGGACATTCGGGGTGACACTAGTGCGCCAGCGATGTCCACG ATGAACGAAGTGAGTCCTATCGAGCCATCATCGCCATTTCTGAAGCAATTCGATGTCGCACACAAACAGGCCAGC AAGGCGCAGACCAAACGACGTCGCAGTCGCTCCCTCCTCCACCGCTTCGCGGATACCTGTCTGCGATACACATGG CTCCTGCCGCTTATCGTGATGCTGTTCCTGCTCGGGTTGTACGCGCTTAACCCCACAACCTCGAACCCGATGCAC AGCGCGATCTTCTTGTCCTACCCGCAGCCCCCCAAGACTCCCGGTGGACCCATCATGTATGGCAAAGGCAAAAAG GATATTGCGTTCGTGGCGTTCTACACGATCGTGCTGTCGTTCACGCGCGAATTTATTATGCAGCAGATGATCCGC CCCTTTGCGGTGTGGTGTGGTATCCGTGGGAAGGGGAAAACGGCTCGGTTCATGGAGCAAGCGTATACGGCCGTG TACTTTGGTGTATTCGGGCCGTTTGGTCTGTACGTGATGAAGCGCTCGACTATCTGGTACTTCAATACGACGGCG ATGTTTGAGGGCTTCCCGCACCGCGAGCACGAGGGTCTGTTCAAGGCGTACTACCTGCTCGAGGCGAGTTATTGG GCTCAGCAGGCGATTGTATTGCTGCTGCAGTTGGAGAAGCCCCGCAAGGACTTCAAGGAGCTTGTTGGTCACCAT ATTATCACGCTTGCGCTTATTGCGCTGAGCTACCGCTTCCACTTCACGTACATGGGCTTGGCGGTGTATATCACG CACGATATCTCCGACTTCTTTTTGGCCACCTCCAAGACGCTCAATTATCTGGATGCGTATATCACCGCGCCATAC TTTGCCATGTTCGTTGGATGGTGGATTTACCTGCGTCATGTGCTGAACCTGAAGATCCTCTGGGCTGTTCTGACC GAGTTCCGCACTGTTGGACCCTTCGAGCTAAACTGGGAGACACAGCAGTACAAGTGCTGGATCAGTCAGTACATC ACCTTTTCGCTGCTCGCCAGTTTGCAGGCTGTCAACCTGTTCTGGCTGTTCCTGATCCTGCGCATCTTGTCAAAC TACATCTTCACCAATGTCGCAAAAGACGAGCGTAGCGAGGACGAAGAGGAAGAGGAAGCGCTAGAGTCTGTCAAT GCGACCAAGGCAATTGCCAGTGGCGCAGACCAGACTGGCAAGGAGAACCACGCTCCTCAGGTTCTGCTCAACGGC GAGCCTGTCACTGAACAGCGTGGTCCTCGGACTCGCAGCAGAAAGGCATAA |
| Gene | >Pro_DTO377G3_2|g650.t1 ATGGTTCGCCCCCGGCGAACATCAGCCTTGGGCGTGGACATTCGGGGTGACACTAGTGCGCCAGCGATGTCCACG ATGAACGAAGTGAGTCCTATCGAGCCATCATCGCCATTTCTGAAGGTACGTATTGAAAGTCATTGCCCACCCACC CAAATCCCCTCACTAACCCGTAATCCCACCAGCAATTCGATGTCGCACACAAACAGGCCAGCAAGGCGCAGACCA AACGACGTCGCAGTCGCTCCCTCCTCCACCGCTTCGCGGATACCTGTCTGCGATACACATGGCTCCTGCCGCTTA TCGTGATGCTGTTCCTGCTCGGGTTGTACGCGCTTAACCCCACAACCTCGAACCCGATGCACAGCGCGATCTTCT TGTCCTACCCGCAGCCCCCCAAGACTCCCGGTGGACCCATCATGTATGGCAAAGGCAAAAAGGATATTGCGTTCG TGGCGTTCTACACGATCGTGCTGTCGTTCACGCGCGAATTTATTATGCAGCAGATGATCCGCCCCTTTGCGGTGT GGTGTGGTATCCGTGGGAAGGGGAAAACGGCTCGGTTCATGGAGCAAGCGTATACGGCCGTGTACTTTGGTGTAT TCGGGCCGTTTGGTCTGTACGTGATGAAGCGCTCGACTATCTGGTACTTCAATACGACGGCGATGTTTGAGGGCT TCCCGCACCGCGAGCACGAGGGTCTGTTCAAGGCGTACTACCTGCTCGAGGCGAGTTATTGGGCTCAGCAGGCGA TTGTATTGCTGCTGCAGTTGGAGAAGCCCCGCAAGGACTTCAAGGAGCTTGTTGGTCACCATATTATCACGCTTG CGCTTATTGCGCTGAGCTACCGCTTCCACTTCACGTACATGGGCTTGGCGGTGTATATCACGCACGATATCTCCG ACTTCTTTTTGGCCACCTCCAAGACGCTCAATTATCTGGATGCGTATATCACCGCGCCATACTTTGCCATGTTCG TTGGATGGTGGATTTACCTGCGTCATGTGCTGAACCTGAAGATCCTCTGGGCTGTTCTGACCGAGTTCCGCACTG TTGGACCCTTCGAGCTAAACTGGGAGACACAGCAGTACAAGTGCTGGATCAGTCAGTACATCACCTTTTCGCTGC TCGCCAGTTTGCAGGCTGTCAACCTGTTCTGGCTGTTCCTGATCCTGCGCATCTTGTCAAACTACATCTTCACCA ATGTCGCAAAAGACGAGCGTAGCGAGGACGAAGAGGAAGAGGAAGCGCTAGAGTCTGTCAATGCGACCAAGGCAA TTGCCAGTGGCGCAGACCAGACTGGCAAGGAGAACCACGCTCCTCAGGTTCTGCTCAACGGCGAGCCTGTCACTG AACAGCGTGGTCCTCGGACTCGCAGCAGAAAGGCATAA |