Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g6498.t1
Gene name
Locationscaffold_17:377734..379301
Strand-
Gene length (bp)1567
Transcript length (bp)1512
Coding sequence length (bp)1512
Protein length (aa) 504

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF11931 SF3a60_Prp9_C SF3a60/Prp9 C-terminal 5.0E-54 383 503
PF16837 SF3A3 Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 2.8E-16 126 177
PF12108 SF3a60_bindingd Splicing factor SF3a60 binding domain 2.3E-15 72 98
PF12874 zf-met Zinc-finger of C2H2 type 8.3E-07 253 276
PF12171 zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 4.4E-07 253 276

GO

GO Term Description Terminal node
GO:0000398 mRNA splicing, via spliceosome Yes
GO:0003723 RNA binding Yes
GO:0005681 spliceosomal complex Yes
GO:0000375 RNA splicing, via transesterification reactions No
GO:0008380 RNA splicing No
GO:0003676 nucleic acid binding No
GO:0016071 mRNA metabolic process No
GO:0005575 cellular_component No
GO:0071704 organic substance metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0006396 RNA processing No
GO:0008150 biological_process No
GO:0016070 RNA metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0140513 nuclear protein-containing complex No
GO:0043170 macromolecule metabolic process No
GO:0008152 metabolic process No
GO:0044238 primary metabolic process No
GO:0005488 binding No
GO:0032991 protein-containing complex No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0003674 molecular_function No
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile No
GO:0006807 nitrogen compound metabolic process No
GO:0097159 organic cyclic compound binding No
GO:1990904 ribonucleoprotein complex No
GO:1901363 heterocyclic compound binding No
GO:0006397 mRNA processing No
GO:0090304 nucleic acid metabolic process No
GO:0044237 cellular metabolic process No
GO:0009987 cellular process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 40 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g6498.t1
MLLEDQRFIHEDLERLEQAIADRVAEEPRNARGHLARDHEVSQFLDRIESQSQRLLEIYRDADGLRQKEVQSIST
GDQFEEFYKQLGEIKEHHKRYPNEPTENLEQAYNRRQTGEGEAPRTAIDNMFTGEEGFGQYLDLTTIHEDYLNLP
GVKRLSYVQYLDIFDCFTSPVLPIKRKDKLSDRYFNYVGELASYLESFIKRVQPLQPLNELFASFDDEFEKQWVA
KEVPGWTDEKSANGASGPATEGTGEGIWCADCEKEFKNENVLRSHLTGKKHIRAAEARKAAGASNEKPSASQGTS
SAHSLKEREVARREHQVRSLANVLREQRQATRINVERRQGMTERERQMEWEAVQAGLDHTGPEPRAGEESDEEDE
EVIYNPLKLPLAWDGKPIPFWLYKLHGLGVEYQCEICGNYTYMGRRAFDKHFSENLHVHGLKCLGITSNTNLFRE
ITSINEAMALWDQLEKDRKKDRDSRDNVVQMEDAEGNVMPERIYLDLQKQGIL*
Coding >Pro_DTO377G3_2|g6498.t1
ATGTTGCTCGAAGATCAAAGGTTCATCCACGAGGATCTAGAGCGGCTAGAACAGGCTATCGCTGATCGCGTGGCG
GAAGAGCCCCGAAATGCTCGAGGCCACTTGGCTCGCGACCATGAAGTCTCCCAGTTCCTAGACAGAATTGAGAGT
CAGTCCCAGCGACTCTTAGAGATCTACCGGGACGCCGATGGATTGCGGCAGAAGGAAGTGCAGTCTATCTCGACA
GGCGATCAATTCGAAGAATTTTACAAGCAGCTAGGGGAAATTAAAGAGCACCACAAGCGCTACCCGAACGAACCA
ACCGAGAACCTCGAGCAAGCATATAATCGCCGTCAGACCGGCGAAGGAGAGGCTCCCCGCACCGCAATCGATAAT
ATGTTCACTGGCGAAGAAGGCTTTGGACAGTATCTGGATCTCACAACTATTCACGAAGATTACCTGAATCTTCCC
GGGGTTAAGCGCTTGTCATACGTCCAATACCTCGATATCTTCGACTGCTTCACATCCCCTGTTTTGCCAATTAAG
CGGAAAGACAAGCTCTCTGATCGTTATTTCAACTATGTTGGCGAGCTTGCTAGCTATCTGGAGAGTTTCATCAAG
AGAGTTCAGCCACTGCAACCCTTGAACGAGCTTTTCGCCAGCTTCGACGACGAATTCGAAAAACAATGGGTTGCG
AAGGAGGTTCCCGGTTGGACAGATGAAAAGTCTGCGAATGGTGCGTCTGGCCCAGCTACCGAAGGGACCGGTGAG
GGTATTTGGTGCGCAGATTGCGAGAAGGAATTTAAGAATGAGAACGTCCTCCGGAGCCACTTGACCGGCAAGAAA
CATATTCGGGCGGCAGAAGCCCGCAAAGCAGCAGGCGCATCCAACGAGAAACCATCAGCATCTCAAGGCACATCT
TCGGCCCATAGCCTCAAGGAGCGCGAAGTTGCACGACGCGAACATCAAGTTCGATCCTTGGCGAATGTTCTGCGC
GAGCAGCGACAAGCGACACGAATCAATGTTGAGCGCCGACAGGGTATGACTGAACGTGAACGCCAAATGGAATGG
GAAGCTGTGCAGGCTGGGCTCGATCACACAGGTCCCGAGCCTCGTGCCGGCGAAGAATCAGATGAAGAGGACGAG
GAGGTTATCTACAACCCATTGAAATTGCCACTGGCATGGGATGGAAAACCTATTCCATTCTGGCTCTACAAGCTC
CATGGCCTCGGCGTCGAATATCAGTGCGAGATTTGCGGAAACTACACCTACATGGGTCGACGAGCATTCGACAAA
CACTTCTCTGAAAACCTCCACGTCCACGGATTAAAGTGTCTCGGCATTACCTCCAACACCAATCTCTTCCGTGAG
ATCACCAGTATCAATGAGGCTATGGCGCTTTGGGATCAGCTCGAAAAGGATCGGAAGAAGGACAGAGATTCACGG
GATAATGTCGTTCAGATGGAGGATGCAGAGGGTAACGTTATGCCCGAAAGGATCTACTTGGATTTGCAAAAGCAG
GGTATTCTCTAA
Transcript >Pro_DTO377G3_2|g6498.t1
ATGTTGCTCGAAGATCAAAGGTTCATCCACGAGGATCTAGAGCGGCTAGAACAGGCTATCGCTGATCGCGTGGCG
GAAGAGCCCCGAAATGCTCGAGGCCACTTGGCTCGCGACCATGAAGTCTCCCAGTTCCTAGACAGAATTGAGAGT
CAGTCCCAGCGACTCTTAGAGATCTACCGGGACGCCGATGGATTGCGGCAGAAGGAAGTGCAGTCTATCTCGACA
GGCGATCAATTCGAAGAATTTTACAAGCAGCTAGGGGAAATTAAAGAGCACCACAAGCGCTACCCGAACGAACCA
ACCGAGAACCTCGAGCAAGCATATAATCGCCGTCAGACCGGCGAAGGAGAGGCTCCCCGCACCGCAATCGATAAT
ATGTTCACTGGCGAAGAAGGCTTTGGACAGTATCTGGATCTCACAACTATTCACGAAGATTACCTGAATCTTCCC
GGGGTTAAGCGCTTGTCATACGTCCAATACCTCGATATCTTCGACTGCTTCACATCCCCTGTTTTGCCAATTAAG
CGGAAAGACAAGCTCTCTGATCGTTATTTCAACTATGTTGGCGAGCTTGCTAGCTATCTGGAGAGTTTCATCAAG
AGAGTTCAGCCACTGCAACCCTTGAACGAGCTTTTCGCCAGCTTCGACGACGAATTCGAAAAACAATGGGTTGCG
AAGGAGGTTCCCGGTTGGACAGATGAAAAGTCTGCGAATGGTGCGTCTGGCCCAGCTACCGAAGGGACCGGTGAG
GGTATTTGGTGCGCAGATTGCGAGAAGGAATTTAAGAATGAGAACGTCCTCCGGAGCCACTTGACCGGCAAGAAA
CATATTCGGGCGGCAGAAGCCCGCAAAGCAGCAGGCGCATCCAACGAGAAACCATCAGCATCTCAAGGCACATCT
TCGGCCCATAGCCTCAAGGAGCGCGAAGTTGCACGACGCGAACATCAAGTTCGATCCTTGGCGAATGTTCTGCGC
GAGCAGCGACAAGCGACACGAATCAATGTTGAGCGCCGACAGGGTATGACTGAACGTGAACGCCAAATGGAATGG
GAAGCTGTGCAGGCTGGGCTCGATCACACAGGTCCCGAGCCTCGTGCCGGCGAAGAATCAGATGAAGAGGACGAG
GAGGTTATCTACAACCCATTGAAATTGCCACTGGCATGGGATGGAAAACCTATTCCATTCTGGCTCTACAAGCTC
CATGGCCTCGGCGTCGAATATCAGTGCGAGATTTGCGGAAACTACACCTACATGGGTCGACGAGCATTCGACAAA
CACTTCTCTGAAAACCTCCACGTCCACGGATTAAAGTGTCTCGGCATTACCTCCAACACCAATCTCTTCCGTGAG
ATCACCAGTATCAATGAGGCTATGGCGCTTTGGGATCAGCTCGAAAAGGATCGGAAGAAGGACAGAGATTCACGG
GATAATGTCGTTCAGATGGAGGATGCAGAGGGTAACGTTATGCCCGAAAGGATCTACTTGGATTTGCAAAAGCAG
GGTATTCTCTAA
Gene >Pro_DTO377G3_2|g6498.t1
ATGTTGCTCGAAGATCAAAGGTTCATCCACGAGGATCTAGAGCGGCTAGAACAGGCTATCGCTGATCGCGTGGCG
GAAGAGCCCCGAAATGTGAGTATACCGCCCAAAATTGTCAGTCACACTTTCTCATATACCGATTAATCAGGCTCG
AGGCCACTTGGCTCGCGACCATGAAGTCTCCCAGTTCCTAGACAGAATTGAGAGTCAGTCCCAGCGACTCTTAGA
GATCTACCGGGACGCCGATGGATTGCGGCAGAAGGAAGTGCAGTCTATCTCGACAGGCGATCAATTCGAAGAATT
TTACAAGCAGCTAGGGGAAATTAAAGAGCACCACAAGCGCTACCCGAACGAACCAACCGAGAACCTCGAGCAAGC
ATATAATCGCCGTCAGACCGGCGAAGGAGAGGCTCCCCGCACCGCAATCGATAATATGTTCACTGGCGAAGAAGG
CTTTGGACAGTATCTGGATCTCACAACTATTCACGAAGATTACCTGAATCTTCCCGGGGTTAAGCGCTTGTCATA
CGTCCAATACCTCGATATCTTCGACTGCTTCACATCCCCTGTTTTGCCAATTAAGCGGAAAGACAAGCTCTCTGA
TCGTTATTTCAACTATGTTGGCGAGCTTGCTAGCTATCTGGAGAGTTTCATCAAGAGAGTTCAGCCACTGCAACC
CTTGAACGAGCTTTTCGCCAGCTTCGACGACGAATTCGAAAAACAATGGGTTGCGAAGGAGGTTCCCGGTTGGAC
AGATGAAAAGTCTGCGAATGGTGCGTCTGGCCCAGCTACCGAAGGGACCGGTGAGGGTATTTGGTGCGCAGATTG
CGAGAAGGAATTTAAGAATGAGAACGTCCTCCGGAGCCACTTGACCGGCAAGAAACATATTCGGGCGGCAGAAGC
CCGCAAAGCAGCAGGCGCATCCAACGAGAAACCATCAGCATCTCAAGGCACATCTTCGGCCCATAGCCTCAAGGA
GCGCGAAGTTGCACGACGCGAACATCAAGTTCGATCCTTGGCGAATGTTCTGCGCGAGCAGCGACAAGCGACACG
AATCAATGTTGAGCGCCGACAGGGTATGACTGAACGTGAACGCCAAATGGAATGGGAAGCTGTGCAGGCTGGGCT
CGATCACACAGGTCCCGAGCCTCGTGCCGGCGAAGAATCAGATGAAGAGGACGAGGAGGTTATCTACAACCCATT
GAAATTGCCACTGGCATGGGATGGAAAACCTATTCCATTCTGGCTCTACAAGCTCCATGGCCTCGGCGTCGAATA
TCAGTGCGAGATTTGCGGAAACTACACCTACATGGGTCGACGAGCATTCGACAAACACTTCTCTGAAAACCTCCA
CGTCCACGGATTAAAGTGTCTCGGCATTACCTCCAACACCAATCTCTTCCGTGAGATCACCAGTATCAATGAGGC
TATGGCGCTTTGGGATCAGCTCGAAAAGGATCGGAAGAAGGACAGAGATTCACGGGATAATGTCGTTCAGATGGA
GGATGCAGAGGGTAACGTTATGCCCGAAAGGATCTACTTGGATTTGCAAAAGCAGGGTATTCTCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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