Protein ID | Pro_DTO377G3_2|g6498.t1 |
Gene name | |
Location | scaffold_17:377734..379301 |
Strand | - |
Gene length (bp) | 1567 |
Transcript length (bp) | 1512 |
Coding sequence length (bp) | 1512 |
Protein length (aa) | 504 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF11931 | DUF3449 | Domain of unknown function (DUF3449) | 7.6E-75 | 314 | 502 |
PF16837 | SF3A3 | Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 | 2.5E-25 | 126 | 208 |
PF12108 | SF3a60_bindingd | Splicing factor SF3a60 binding domain | 2.7E-15 | 72 | 98 |
PF12874 | zf-met | Zinc-finger of C2H2 type | 6.7E-07 | 253 | 276 |
PF12171 | zf-C2H2_jaz | Zinc-finger double-stranded RNA-binding | 2.5E-07 | 253 | 276 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 40 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g6498.t1 MLLEDQRFIHEDLERLEQAIADRVAEEPRNARGHLARDHEVSQFLDRIESQSQRLLEIYRDADGLRQKEVQSIST GDQFEEFYKQLGEIKEHHKRYPNEPTENLEQAYNRRQTGEGEAPRTAIDNMFTGEEGFGQYLDLTTIHEDYLNLP GVKRLSYVQYLDIFDCFTSPVLPIKRKDKLSDRYFNYVGELASYLESFIKRVQPLQPLNELFASFDDEFEKQWVA KEVPGWTDEKSANGASGPATEGTGEGIWCADCEKEFKNENVLRSHLTGKKHIRAAEARKAAGASNEKPSASQGTS SAHSLKEREVARREHQVRSLANVLREQRQATRINVERRQGMTERERQMEWEAVQAGLDHTGPEPRAGEESDEEDE EVIYNPLKLPLAWDGKPIPFWLYKLHGLGVEYQCEICGNYTYMGRRAFDKHFSENLHVHGLKCLGITSNTNLFRE ITSINEAMALWDQLEKDRKKDRDSRDNVVQMEDAEGNVMPERIYLDLQKQGIL* |
Coding | >Pro_DTO377G3_2|g6498.t1 ATGTTGCTCGAAGATCAAAGGTTCATCCACGAGGATCTAGAGCGGCTAGAACAGGCTATCGCTGATCGCGTGGCG GAAGAGCCCCGAAATGCTCGAGGCCACTTGGCTCGCGACCATGAAGTCTCCCAGTTCCTAGACAGAATTGAGAGT CAGTCCCAGCGACTCTTAGAGATCTACCGGGACGCCGATGGATTGCGGCAGAAGGAAGTGCAGTCTATCTCGACA GGCGATCAATTCGAAGAATTTTACAAGCAGCTAGGGGAAATTAAAGAGCACCACAAGCGCTACCCGAACGAACCA ACCGAGAACCTCGAGCAAGCATATAATCGCCGTCAGACCGGCGAAGGAGAGGCTCCCCGCACCGCAATCGATAAT ATGTTCACTGGCGAAGAAGGCTTTGGACAGTATCTGGATCTCACAACTATTCACGAAGATTACCTGAATCTTCCC GGGGTTAAGCGCTTGTCATACGTCCAATACCTCGATATCTTCGACTGCTTCACATCCCCTGTTTTGCCAATTAAG CGGAAAGACAAGCTCTCTGATCGTTATTTCAACTATGTTGGCGAGCTTGCTAGCTATCTGGAGAGTTTCATCAAG AGAGTTCAGCCACTGCAACCCTTGAACGAGCTTTTCGCCAGCTTCGACGACGAATTCGAAAAACAATGGGTTGCG AAGGAGGTTCCCGGTTGGACAGATGAAAAGTCTGCGAATGGTGCGTCTGGCCCAGCTACCGAAGGGACCGGTGAG GGTATTTGGTGCGCAGATTGCGAGAAGGAATTTAAGAATGAGAACGTCCTCCGGAGCCACTTGACCGGCAAGAAA CATATTCGGGCGGCAGAAGCCCGCAAAGCAGCAGGCGCATCCAACGAGAAACCATCAGCATCTCAAGGCACATCT TCGGCCCATAGCCTCAAGGAGCGCGAAGTTGCACGACGCGAACATCAAGTTCGATCCTTGGCGAATGTTCTGCGC GAGCAGCGACAAGCGACACGAATCAATGTTGAGCGCCGACAGGGTATGACTGAACGTGAACGCCAAATGGAATGG GAAGCTGTGCAGGCTGGGCTCGATCACACAGGTCCCGAGCCTCGTGCCGGCGAAGAATCAGATGAAGAGGACGAG GAGGTTATCTACAACCCATTGAAATTGCCACTGGCATGGGATGGAAAACCTATTCCATTCTGGCTCTACAAGCTC CATGGCCTCGGCGTCGAATATCAGTGCGAGATTTGCGGAAACTACACCTACATGGGTCGACGAGCATTCGACAAA CACTTCTCTGAAAACCTCCACGTCCACGGATTAAAGTGTCTCGGCATTACCTCCAACACCAATCTCTTCCGTGAG ATCACCAGTATCAATGAGGCTATGGCGCTTTGGGATCAGCTCGAAAAGGATCGGAAGAAGGACAGAGATTCACGG GATAATGTCGTTCAGATGGAGGATGCAGAGGGTAACGTTATGCCCGAAAGGATCTACTTGGATTTGCAAAAGCAG GGTATTCTCTAA |
Transcript | >Pro_DTO377G3_2|g6498.t1 ATGTTGCTCGAAGATCAAAGGTTCATCCACGAGGATCTAGAGCGGCTAGAACAGGCTATCGCTGATCGCGTGGCG GAAGAGCCCCGAAATGCTCGAGGCCACTTGGCTCGCGACCATGAAGTCTCCCAGTTCCTAGACAGAATTGAGAGT CAGTCCCAGCGACTCTTAGAGATCTACCGGGACGCCGATGGATTGCGGCAGAAGGAAGTGCAGTCTATCTCGACA GGCGATCAATTCGAAGAATTTTACAAGCAGCTAGGGGAAATTAAAGAGCACCACAAGCGCTACCCGAACGAACCA ACCGAGAACCTCGAGCAAGCATATAATCGCCGTCAGACCGGCGAAGGAGAGGCTCCCCGCACCGCAATCGATAAT ATGTTCACTGGCGAAGAAGGCTTTGGACAGTATCTGGATCTCACAACTATTCACGAAGATTACCTGAATCTTCCC GGGGTTAAGCGCTTGTCATACGTCCAATACCTCGATATCTTCGACTGCTTCACATCCCCTGTTTTGCCAATTAAG CGGAAAGACAAGCTCTCTGATCGTTATTTCAACTATGTTGGCGAGCTTGCTAGCTATCTGGAGAGTTTCATCAAG AGAGTTCAGCCACTGCAACCCTTGAACGAGCTTTTCGCCAGCTTCGACGACGAATTCGAAAAACAATGGGTTGCG AAGGAGGTTCCCGGTTGGACAGATGAAAAGTCTGCGAATGGTGCGTCTGGCCCAGCTACCGAAGGGACCGGTGAG GGTATTTGGTGCGCAGATTGCGAGAAGGAATTTAAGAATGAGAACGTCCTCCGGAGCCACTTGACCGGCAAGAAA CATATTCGGGCGGCAGAAGCCCGCAAAGCAGCAGGCGCATCCAACGAGAAACCATCAGCATCTCAAGGCACATCT TCGGCCCATAGCCTCAAGGAGCGCGAAGTTGCACGACGCGAACATCAAGTTCGATCCTTGGCGAATGTTCTGCGC GAGCAGCGACAAGCGACACGAATCAATGTTGAGCGCCGACAGGGTATGACTGAACGTGAACGCCAAATGGAATGG GAAGCTGTGCAGGCTGGGCTCGATCACACAGGTCCCGAGCCTCGTGCCGGCGAAGAATCAGATGAAGAGGACGAG GAGGTTATCTACAACCCATTGAAATTGCCACTGGCATGGGATGGAAAACCTATTCCATTCTGGCTCTACAAGCTC CATGGCCTCGGCGTCGAATATCAGTGCGAGATTTGCGGAAACTACACCTACATGGGTCGACGAGCATTCGACAAA CACTTCTCTGAAAACCTCCACGTCCACGGATTAAAGTGTCTCGGCATTACCTCCAACACCAATCTCTTCCGTGAG ATCACCAGTATCAATGAGGCTATGGCGCTTTGGGATCAGCTCGAAAAGGATCGGAAGAAGGACAGAGATTCACGG GATAATGTCGTTCAGATGGAGGATGCAGAGGGTAACGTTATGCCCGAAAGGATCTACTTGGATTTGCAAAAGCAG GGTATTCTCTAA |
Gene | >Pro_DTO377G3_2|g6498.t1 ATGTTGCTCGAAGATCAAAGGTTCATCCACGAGGATCTAGAGCGGCTAGAACAGGCTATCGCTGATCGCGTGGCG GAAGAGCCCCGAAATGTGAGTATACCGCCCAAAATTGTCAGTCACACTTTCTCATATACCGATTAATCAGGCTCG AGGCCACTTGGCTCGCGACCATGAAGTCTCCCAGTTCCTAGACAGAATTGAGAGTCAGTCCCAGCGACTCTTAGA GATCTACCGGGACGCCGATGGATTGCGGCAGAAGGAAGTGCAGTCTATCTCGACAGGCGATCAATTCGAAGAATT TTACAAGCAGCTAGGGGAAATTAAAGAGCACCACAAGCGCTACCCGAACGAACCAACCGAGAACCTCGAGCAAGC ATATAATCGCCGTCAGACCGGCGAAGGAGAGGCTCCCCGCACCGCAATCGATAATATGTTCACTGGCGAAGAAGG CTTTGGACAGTATCTGGATCTCACAACTATTCACGAAGATTACCTGAATCTTCCCGGGGTTAAGCGCTTGTCATA CGTCCAATACCTCGATATCTTCGACTGCTTCACATCCCCTGTTTTGCCAATTAAGCGGAAAGACAAGCTCTCTGA TCGTTATTTCAACTATGTTGGCGAGCTTGCTAGCTATCTGGAGAGTTTCATCAAGAGAGTTCAGCCACTGCAACC CTTGAACGAGCTTTTCGCCAGCTTCGACGACGAATTCGAAAAACAATGGGTTGCGAAGGAGGTTCCCGGTTGGAC AGATGAAAAGTCTGCGAATGGTGCGTCTGGCCCAGCTACCGAAGGGACCGGTGAGGGTATTTGGTGCGCAGATTG CGAGAAGGAATTTAAGAATGAGAACGTCCTCCGGAGCCACTTGACCGGCAAGAAACATATTCGGGCGGCAGAAGC CCGCAAAGCAGCAGGCGCATCCAACGAGAAACCATCAGCATCTCAAGGCACATCTTCGGCCCATAGCCTCAAGGA GCGCGAAGTTGCACGACGCGAACATCAAGTTCGATCCTTGGCGAATGTTCTGCGCGAGCAGCGACAAGCGACACG AATCAATGTTGAGCGCCGACAGGGTATGACTGAACGTGAACGCCAAATGGAATGGGAAGCTGTGCAGGCTGGGCT CGATCACACAGGTCCCGAGCCTCGTGCCGGCGAAGAATCAGATGAAGAGGACGAGGAGGTTATCTACAACCCATT GAAATTGCCACTGGCATGGGATGGAAAACCTATTCCATTCTGGCTCTACAAGCTCCATGGCCTCGGCGTCGAATA TCAGTGCGAGATTTGCGGAAACTACACCTACATGGGTCGACGAGCATTCGACAAACACTTCTCTGAAAACCTCCA CGTCCACGGATTAAAGTGTCTCGGCATTACCTCCAACACCAATCTCTTCCGTGAGATCACCAGTATCAATGAGGC TATGGCGCTTTGGGATCAGCTCGAAAAGGATCGGAAGAAGGACAGAGATTCACGGGATAATGTCGTTCAGATGGA GGATGCAGAGGGTAACGTTATGCCCGAAAGGATCTACTTGGATTTGCAAAAGCAGGGTATTCTCTAA |