Protein ID | Pro_DTO377G3_2|g6498.t1 |
Gene name | |
Location | scaffold_17:377734..379301 |
Strand | - |
Gene length (bp) | 1567 |
Transcript length (bp) | 1512 |
Coding sequence length (bp) | 1512 |
Protein length (aa) | 504 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF11931 | SF3a60_Prp9_C | SF3a60/Prp9 C-terminal | 5.0E-54 | 383 | 503 |
PF16837 | SF3A3 | Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 | 2.8E-16 | 126 | 177 |
PF12108 | SF3a60_bindingd | Splicing factor SF3a60 binding domain | 2.3E-15 | 72 | 98 |
PF12874 | zf-met | Zinc-finger of C2H2 type | 8.3E-07 | 253 | 276 |
PF12171 | zf-C2H2_jaz | Zinc-finger double-stranded RNA-binding | 4.4E-07 | 253 | 276 |
GO Term | Description | Terminal node |
---|---|---|
GO:0000398 | mRNA splicing, via spliceosome | Yes |
GO:0003723 | RNA binding | Yes |
GO:0005681 | spliceosomal complex | Yes |
GO:0000375 | RNA splicing, via transesterification reactions | No |
GO:0008380 | RNA splicing | No |
GO:0003676 | nucleic acid binding | No |
GO:0016071 | mRNA metabolic process | No |
GO:0005575 | cellular_component | No |
GO:0071704 | organic substance metabolic process | No |
GO:1901360 | organic cyclic compound metabolic process | No |
GO:0006725 | cellular aromatic compound metabolic process | No |
GO:0006396 | RNA processing | No |
GO:0008150 | biological_process | No |
GO:0016070 | RNA metabolic process | No |
GO:0006139 | nucleobase-containing compound metabolic process | No |
GO:0140513 | nuclear protein-containing complex | No |
GO:0043170 | macromolecule metabolic process | No |
GO:0008152 | metabolic process | No |
GO:0044238 | primary metabolic process | No |
GO:0005488 | binding | No |
GO:0032991 | protein-containing complex | No |
GO:0034641 | cellular nitrogen compound metabolic process | No |
GO:0046483 | heterocycle metabolic process | No |
GO:0003674 | molecular_function | No |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | No |
GO:0006807 | nitrogen compound metabolic process | No |
GO:0097159 | organic cyclic compound binding | No |
GO:1990904 | ribonucleoprotein complex | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0006397 | mRNA processing | No |
GO:0090304 | nucleic acid metabolic process | No |
GO:0044237 | cellular metabolic process | No |
GO:0009987 | cellular process | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 40 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g6498.t1 MLLEDQRFIHEDLERLEQAIADRVAEEPRNARGHLARDHEVSQFLDRIESQSQRLLEIYRDADGLRQKEVQSIST GDQFEEFYKQLGEIKEHHKRYPNEPTENLEQAYNRRQTGEGEAPRTAIDNMFTGEEGFGQYLDLTTIHEDYLNLP GVKRLSYVQYLDIFDCFTSPVLPIKRKDKLSDRYFNYVGELASYLESFIKRVQPLQPLNELFASFDDEFEKQWVA KEVPGWTDEKSANGASGPATEGTGEGIWCADCEKEFKNENVLRSHLTGKKHIRAAEARKAAGASNEKPSASQGTS SAHSLKEREVARREHQVRSLANVLREQRQATRINVERRQGMTERERQMEWEAVQAGLDHTGPEPRAGEESDEEDE EVIYNPLKLPLAWDGKPIPFWLYKLHGLGVEYQCEICGNYTYMGRRAFDKHFSENLHVHGLKCLGITSNTNLFRE ITSINEAMALWDQLEKDRKKDRDSRDNVVQMEDAEGNVMPERIYLDLQKQGIL* |
Coding | >Pro_DTO377G3_2|g6498.t1 ATGTTGCTCGAAGATCAAAGGTTCATCCACGAGGATCTAGAGCGGCTAGAACAGGCTATCGCTGATCGCGTGGCG GAAGAGCCCCGAAATGCTCGAGGCCACTTGGCTCGCGACCATGAAGTCTCCCAGTTCCTAGACAGAATTGAGAGT CAGTCCCAGCGACTCTTAGAGATCTACCGGGACGCCGATGGATTGCGGCAGAAGGAAGTGCAGTCTATCTCGACA GGCGATCAATTCGAAGAATTTTACAAGCAGCTAGGGGAAATTAAAGAGCACCACAAGCGCTACCCGAACGAACCA ACCGAGAACCTCGAGCAAGCATATAATCGCCGTCAGACCGGCGAAGGAGAGGCTCCCCGCACCGCAATCGATAAT ATGTTCACTGGCGAAGAAGGCTTTGGACAGTATCTGGATCTCACAACTATTCACGAAGATTACCTGAATCTTCCC GGGGTTAAGCGCTTGTCATACGTCCAATACCTCGATATCTTCGACTGCTTCACATCCCCTGTTTTGCCAATTAAG CGGAAAGACAAGCTCTCTGATCGTTATTTCAACTATGTTGGCGAGCTTGCTAGCTATCTGGAGAGTTTCATCAAG AGAGTTCAGCCACTGCAACCCTTGAACGAGCTTTTCGCCAGCTTCGACGACGAATTCGAAAAACAATGGGTTGCG AAGGAGGTTCCCGGTTGGACAGATGAAAAGTCTGCGAATGGTGCGTCTGGCCCAGCTACCGAAGGGACCGGTGAG GGTATTTGGTGCGCAGATTGCGAGAAGGAATTTAAGAATGAGAACGTCCTCCGGAGCCACTTGACCGGCAAGAAA CATATTCGGGCGGCAGAAGCCCGCAAAGCAGCAGGCGCATCCAACGAGAAACCATCAGCATCTCAAGGCACATCT TCGGCCCATAGCCTCAAGGAGCGCGAAGTTGCACGACGCGAACATCAAGTTCGATCCTTGGCGAATGTTCTGCGC GAGCAGCGACAAGCGACACGAATCAATGTTGAGCGCCGACAGGGTATGACTGAACGTGAACGCCAAATGGAATGG GAAGCTGTGCAGGCTGGGCTCGATCACACAGGTCCCGAGCCTCGTGCCGGCGAAGAATCAGATGAAGAGGACGAG GAGGTTATCTACAACCCATTGAAATTGCCACTGGCATGGGATGGAAAACCTATTCCATTCTGGCTCTACAAGCTC CATGGCCTCGGCGTCGAATATCAGTGCGAGATTTGCGGAAACTACACCTACATGGGTCGACGAGCATTCGACAAA CACTTCTCTGAAAACCTCCACGTCCACGGATTAAAGTGTCTCGGCATTACCTCCAACACCAATCTCTTCCGTGAG ATCACCAGTATCAATGAGGCTATGGCGCTTTGGGATCAGCTCGAAAAGGATCGGAAGAAGGACAGAGATTCACGG GATAATGTCGTTCAGATGGAGGATGCAGAGGGTAACGTTATGCCCGAAAGGATCTACTTGGATTTGCAAAAGCAG GGTATTCTCTAA |
Transcript | >Pro_DTO377G3_2|g6498.t1 ATGTTGCTCGAAGATCAAAGGTTCATCCACGAGGATCTAGAGCGGCTAGAACAGGCTATCGCTGATCGCGTGGCG GAAGAGCCCCGAAATGCTCGAGGCCACTTGGCTCGCGACCATGAAGTCTCCCAGTTCCTAGACAGAATTGAGAGT CAGTCCCAGCGACTCTTAGAGATCTACCGGGACGCCGATGGATTGCGGCAGAAGGAAGTGCAGTCTATCTCGACA GGCGATCAATTCGAAGAATTTTACAAGCAGCTAGGGGAAATTAAAGAGCACCACAAGCGCTACCCGAACGAACCA ACCGAGAACCTCGAGCAAGCATATAATCGCCGTCAGACCGGCGAAGGAGAGGCTCCCCGCACCGCAATCGATAAT ATGTTCACTGGCGAAGAAGGCTTTGGACAGTATCTGGATCTCACAACTATTCACGAAGATTACCTGAATCTTCCC GGGGTTAAGCGCTTGTCATACGTCCAATACCTCGATATCTTCGACTGCTTCACATCCCCTGTTTTGCCAATTAAG CGGAAAGACAAGCTCTCTGATCGTTATTTCAACTATGTTGGCGAGCTTGCTAGCTATCTGGAGAGTTTCATCAAG AGAGTTCAGCCACTGCAACCCTTGAACGAGCTTTTCGCCAGCTTCGACGACGAATTCGAAAAACAATGGGTTGCG AAGGAGGTTCCCGGTTGGACAGATGAAAAGTCTGCGAATGGTGCGTCTGGCCCAGCTACCGAAGGGACCGGTGAG GGTATTTGGTGCGCAGATTGCGAGAAGGAATTTAAGAATGAGAACGTCCTCCGGAGCCACTTGACCGGCAAGAAA CATATTCGGGCGGCAGAAGCCCGCAAAGCAGCAGGCGCATCCAACGAGAAACCATCAGCATCTCAAGGCACATCT TCGGCCCATAGCCTCAAGGAGCGCGAAGTTGCACGACGCGAACATCAAGTTCGATCCTTGGCGAATGTTCTGCGC GAGCAGCGACAAGCGACACGAATCAATGTTGAGCGCCGACAGGGTATGACTGAACGTGAACGCCAAATGGAATGG GAAGCTGTGCAGGCTGGGCTCGATCACACAGGTCCCGAGCCTCGTGCCGGCGAAGAATCAGATGAAGAGGACGAG GAGGTTATCTACAACCCATTGAAATTGCCACTGGCATGGGATGGAAAACCTATTCCATTCTGGCTCTACAAGCTC CATGGCCTCGGCGTCGAATATCAGTGCGAGATTTGCGGAAACTACACCTACATGGGTCGACGAGCATTCGACAAA CACTTCTCTGAAAACCTCCACGTCCACGGATTAAAGTGTCTCGGCATTACCTCCAACACCAATCTCTTCCGTGAG ATCACCAGTATCAATGAGGCTATGGCGCTTTGGGATCAGCTCGAAAAGGATCGGAAGAAGGACAGAGATTCACGG GATAATGTCGTTCAGATGGAGGATGCAGAGGGTAACGTTATGCCCGAAAGGATCTACTTGGATTTGCAAAAGCAG GGTATTCTCTAA |
Gene | >Pro_DTO377G3_2|g6498.t1 ATGTTGCTCGAAGATCAAAGGTTCATCCACGAGGATCTAGAGCGGCTAGAACAGGCTATCGCTGATCGCGTGGCG GAAGAGCCCCGAAATGTGAGTATACCGCCCAAAATTGTCAGTCACACTTTCTCATATACCGATTAATCAGGCTCG AGGCCACTTGGCTCGCGACCATGAAGTCTCCCAGTTCCTAGACAGAATTGAGAGTCAGTCCCAGCGACTCTTAGA GATCTACCGGGACGCCGATGGATTGCGGCAGAAGGAAGTGCAGTCTATCTCGACAGGCGATCAATTCGAAGAATT TTACAAGCAGCTAGGGGAAATTAAAGAGCACCACAAGCGCTACCCGAACGAACCAACCGAGAACCTCGAGCAAGC ATATAATCGCCGTCAGACCGGCGAAGGAGAGGCTCCCCGCACCGCAATCGATAATATGTTCACTGGCGAAGAAGG CTTTGGACAGTATCTGGATCTCACAACTATTCACGAAGATTACCTGAATCTTCCCGGGGTTAAGCGCTTGTCATA CGTCCAATACCTCGATATCTTCGACTGCTTCACATCCCCTGTTTTGCCAATTAAGCGGAAAGACAAGCTCTCTGA TCGTTATTTCAACTATGTTGGCGAGCTTGCTAGCTATCTGGAGAGTTTCATCAAGAGAGTTCAGCCACTGCAACC CTTGAACGAGCTTTTCGCCAGCTTCGACGACGAATTCGAAAAACAATGGGTTGCGAAGGAGGTTCCCGGTTGGAC AGATGAAAAGTCTGCGAATGGTGCGTCTGGCCCAGCTACCGAAGGGACCGGTGAGGGTATTTGGTGCGCAGATTG CGAGAAGGAATTTAAGAATGAGAACGTCCTCCGGAGCCACTTGACCGGCAAGAAACATATTCGGGCGGCAGAAGC CCGCAAAGCAGCAGGCGCATCCAACGAGAAACCATCAGCATCTCAAGGCACATCTTCGGCCCATAGCCTCAAGGA GCGCGAAGTTGCACGACGCGAACATCAAGTTCGATCCTTGGCGAATGTTCTGCGCGAGCAGCGACAAGCGACACG AATCAATGTTGAGCGCCGACAGGGTATGACTGAACGTGAACGCCAAATGGAATGGGAAGCTGTGCAGGCTGGGCT CGATCACACAGGTCCCGAGCCTCGTGCCGGCGAAGAATCAGATGAAGAGGACGAGGAGGTTATCTACAACCCATT GAAATTGCCACTGGCATGGGATGGAAAACCTATTCCATTCTGGCTCTACAAGCTCCATGGCCTCGGCGTCGAATA TCAGTGCGAGATTTGCGGAAACTACACCTACATGGGTCGACGAGCATTCGACAAACACTTCTCTGAAAACCTCCA CGTCCACGGATTAAAGTGTCTCGGCATTACCTCCAACACCAATCTCTTCCGTGAGATCACCAGTATCAATGAGGC TATGGCGCTTTGGGATCAGCTCGAAAAGGATCGGAAGAAGGACAGAGATTCACGGGATAATGTCGTTCAGATGGA GGATGCAGAGGGTAACGTTATGCCCGAAAGGATCTACTTGGATTTGCAAAAGCAGGGTATTCTCTAA |