© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6474.t1 |
| Gene name | |
| Location | scaffold_17:286661..288296 |
| Strand | - |
| Gene length (bp) | 1635 |
| Transcript length (bp) | 1533 |
| Coding sequence length (bp) | 1533 |
| Protein length (aa) | 511 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00067 | p450 | Cytochrome P450 | 2.0E-43 | 79 | 488 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | Yes |
| GO:0004497 | monooxygenase activity | Yes |
| GO:0020037 | heme binding | Yes |
| GO:0005506 | iron ion binding | Yes |
| GO:0046914 | transition metal ion binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0046906 | tetrapyrrole binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 24 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 2 | 24 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 15.25 | 7.47 | 23.03 |
| 5d_25C | Five days - 25 degrees Celsius | 16.99 | 8.50 | 25.49 |
| 7d_25C | Seven days - 25 degrees Celsius | 20.69 | 10.47 | 30.92 |
| 10d_25C | Ten days - 25 degrees Celsius | 11.39 | 4.92 | 17.85 |
| 7d_15C | Seven days - 15 degrees Celsius | 18.11 | 8.64 | 27.58 |
| 7d_30C | Seven days - 30 degrees Celsius | 96.80 | 56.21 | 137.40 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.781870 | no |
| 3d_25C | 7d_25C | 0.310862 | no |
| 3d_25C | 7d_15C | 0.639312 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.392296 | no |
| 5d_25C | 7d_25C | 0.554714 | no |
| 5d_25C | 7d_15C | 0.882438 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.207685 | no |
| 7d_25C | 7d_15C | 0.716180 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.035449 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.132659 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6474.t1 MSGYILLTLQLAVVSLLVILWHSFQPNTWSNRVVSCIINKFLLWWYPIYSTDGSTPIPTCPYRFPDGGGSIKFLE GENVSRQWAEKYGPVYRIWVGLTPEIILTRADEIKTVFKDSGNHHKASNLNGGWVMGDLVGDGVGLISQGHWKRV HAVVSPPFTQKPTTYVPFVHSRISRHFSELYKQYEGGKTLRIKPAEDLKLLPFWVISDLLYGNLSPEMTEELLHI TDLRTDVFQYAFKGGLSLFSISKIFYPAIRNKLHVFHARWANFNRKAYQYAMNRDDASACAIVGLYRAVEQGQIT PTELMHTLDEALFANIDVTIGSFSWIPQFLAEDPGLQTELRAEISQTRSDTTPESWVKYIASNTTLLASCINESA RLKPVTNYTYAQSMPTDRDVGGYRIPRGTFMVVDTNALNIWDDAWGSDKMTFRPRRFLEESRASFRYRFWRFGFG PRQCIAQALADTILKVLVAYTVENYELKSAGKSAVNEEDARKRGEAWFKVAEQEIILEAI* |
| Coding | >Pro_DTO377G3_2|g6474.t1 ATGTCAGGTTACATTCTTCTTACGCTGCAACTGGCAGTTGTATCACTCCTAGTCATTTTGTGGCACTCCTTTCAA CCAAATACTTGGTCAAATCGAGTAGTGTCCTGCATAATCAATAAATTTTTACTCTGGTGGTATCCAATATATTCA ACAGATGGCTCAACGCCTATTCCAACTTGTCCCTACCGATTTCCAGATGGCGGGGGGAGTATCAAGTTCCTGGAA GGAGAGAATGTCTCTCGCCAGTGGGCCGAGAAATATGGCCCGGTGTATCGCATCTGGGTTGGACTCACGCCAGAA ATCATTTTGACCCGCGCGGATGAGATCAAGACGGTCTTTAAAGACTCTGGTAACCACCACAAGGCTTCAAACCTA AATGGTGGATGGGTAATGGGAGATCTAGTCGGCGATGGTGTCGGTCTGATCAGTCAAGGACACTGGAAACGAGTC CATGCTGTAGTTTCACCACCCTTTACCCAGAAGCCCACGACATACGTTCCATTTGTCCATTCCCGTATTTCTCGC CATTTTTCCGAGTTATACAAGCAGTATGAAGGCGGGAAAACGCTGCGAATCAAGCCCGCCGAGGATCTCAAGCTT CTGCCCTTCTGGGTCATTAGCGACCTCTTATATGGAAACTTGTCCCCGGAGATGACAGAGGAGCTGTTGCACATT ACCGATTTGCGCACCGATGTGTTTCAATATGCCTTCAAGGGTGGTCTGTCACTCTTTTCCATCAGCAAGATATTT TACCCGGCTATAAGGAACAAGCTTCACGTCTTCCACGCTCGCTGGGCTAACTTCAATCGGAAGGCGTATCAATAT GCAATGAACCGTGACGATGCCTCTGCTTGTGCTATTGTTGGCTTGTATAGGGCCGTGGAACAAGGTCAGATTACG CCAACCGAGCTGATGCATACATTGGACGAAGCACTATTTGCCAACATCGATGTGACGATTGGCAGCTTCTCTTGG ATCCCACAATTCCTGGCTGAGGATCCCGGATTACAGACCGAGCTTAGAGCAGAGATCTCACAGACCAGATCCGAC ACAACTCCAGAGTCTTGGGTCAAATACATTGCCAGCAACACCACTCTGCTGGCAAGTTGTATCAATGAATCTGCG AGGCTGAAGCCAGTCACCAACTACACCTATGCGCAATCGATGCCCACTGACCGGGATGTGGGTGGATACCGCATT CCTCGTGGGACCTTCATGGTGGTTGACACCAATGCGCTGAATATCTGGGATGACGCGTGGGGCTCCGATAAAATG ACCTTCCGGCCCCGGCGGTTCCTGGAGGAATCTAGGGCCAGCTTTCGGTATCGCTTTTGGCGTTTTGGCTTCGGG CCCCGCCAGTGTATTGCGCAAGCCTTGGCAGATACGATCCTCAAGGTGCTGGTTGCGTACACCGTCGAAAATTAC GAGTTAAAGTCCGCTGGAAAGTCTGCTGTGAATGAGGAGGACGCCCGGAAACGAGGCGAAGCGTGGTTCAAGGTT GCCGAGCAGGAGATTATCCTGGAAGCGATATAG |
| Transcript | >Pro_DTO377G3_2|g6474.t1 ATGTCAGGTTACATTCTTCTTACGCTGCAACTGGCAGTTGTATCACTCCTAGTCATTTTGTGGCACTCCTTTCAA CCAAATACTTGGTCAAATCGAGTAGTGTCCTGCATAATCAATAAATTTTTACTCTGGTGGTATCCAATATATTCA ACAGATGGCTCAACGCCTATTCCAACTTGTCCCTACCGATTTCCAGATGGCGGGGGGAGTATCAAGTTCCTGGAA GGAGAGAATGTCTCTCGCCAGTGGGCCGAGAAATATGGCCCGGTGTATCGCATCTGGGTTGGACTCACGCCAGAA ATCATTTTGACCCGCGCGGATGAGATCAAGACGGTCTTTAAAGACTCTGGTAACCACCACAAGGCTTCAAACCTA AATGGTGGATGGGTAATGGGAGATCTAGTCGGCGATGGTGTCGGTCTGATCAGTCAAGGACACTGGAAACGAGTC CATGCTGTAGTTTCACCACCCTTTACCCAGAAGCCCACGACATACGTTCCATTTGTCCATTCCCGTATTTCTCGC CATTTTTCCGAGTTATACAAGCAGTATGAAGGCGGGAAAACGCTGCGAATCAAGCCCGCCGAGGATCTCAAGCTT CTGCCCTTCTGGGTCATTAGCGACCTCTTATATGGAAACTTGTCCCCGGAGATGACAGAGGAGCTGTTGCACATT ACCGATTTGCGCACCGATGTGTTTCAATATGCCTTCAAGGGTGGTCTGTCACTCTTTTCCATCAGCAAGATATTT TACCCGGCTATAAGGAACAAGCTTCACGTCTTCCACGCTCGCTGGGCTAACTTCAATCGGAAGGCGTATCAATAT GCAATGAACCGTGACGATGCCTCTGCTTGTGCTATTGTTGGCTTGTATAGGGCCGTGGAACAAGGTCAGATTACG CCAACCGAGCTGATGCATACATTGGACGAAGCACTATTTGCCAACATCGATGTGACGATTGGCAGCTTCTCTTGG ATCCCACAATTCCTGGCTGAGGATCCCGGATTACAGACCGAGCTTAGAGCAGAGATCTCACAGACCAGATCCGAC ACAACTCCAGAGTCTTGGGTCAAATACATTGCCAGCAACACCACTCTGCTGGCAAGTTGTATCAATGAATCTGCG AGGCTGAAGCCAGTCACCAACTACACCTATGCGCAATCGATGCCCACTGACCGGGATGTGGGTGGATACCGCATT CCTCGTGGGACCTTCATGGTGGTTGACACCAATGCGCTGAATATCTGGGATGACGCGTGGGGCTCCGATAAAATG ACCTTCCGGCCCCGGCGGTTCCTGGAGGAATCTAGGGCCAGCTTTCGGTATCGCTTTTGGCGTTTTGGCTTCGGG CCCCGCCAGTGTATTGCGCAAGCCTTGGCAGATACGATCCTCAAGGTGCTGGTTGCGTACACCGTCGAAAATTAC GAGTTAAAGTCCGCTGGAAAGTCTGCTGTGAATGAGGAGGACGCCCGGAAACGAGGCGAAGCGTGGTTCAAGGTT GCCGAGCAGGAGATTATCCTGGAAGCGATATAG |
| Gene | >Pro_DTO377G3_2|g6474.t1 ATGTCAGGTTACATTCTTCTTACGCTGCAACTGGCAGTTGTATCACTCCTAGTCATTTTGTGGCACTCCTTTCAA CCAAATACTTGGTCAAATCGAGTAGTGTCCTGCATAATCAATGTCGGTAATACCCCGAAAGTACATCAACAGAAC TCTGCTGACTGCCAACGTAGAAATTTTTACTCTGGTGGTATCCAATATATTCAACAGATGGCTCAACGCCTATTC CAACTTGTCCCTACCGATTTCCAGATGGCGGGGGGAGTATCAAGTTCCTGGAAGGAGAGAATGTCTCTCGCCAGT GGGCCGAGAAATATGGCCCGGTGTATCGCATCTGGGTTGGACTCACGCCAGAAATGTAAGTTTGCTCTCTTCAAG ATGAACTGCTCAGGCTAAATGAAGTCTAGCATTTTGACCCGCGCGGATGAGATCAAGACGGTCTTTAAAGACTCT GGTAACCACCACAAGGCTTCAAACCTAAATGGTGGATGGGTAATGGGAGATCTAGTCGGCGATGGTGTCGGTCTG ATCAGTCAAGGACACTGGAAACGAGTCCATGCTGTAGTTTCACCACCCTTTACCCAGAAGCCCACGACATACGTT CCATTTGTCCATTCCCGTATTTCTCGCCATTTTTCCGAGTTATACAAGCAGTATGAAGGCGGGAAAACGCTGCGA ATCAAGCCCGCCGAGGATCTCAAGCTTCTGCCCTTCTGGGTCATTAGCGACCTCTTATATGGAAACTTGTCCCCG GAGATGACAGAGGAGCTGTTGCACATTACCGATTTGCGCACCGATGTGTTTCAATATGCCTTCAAGGGTGGTCTG TCACTCTTTTCCATCAGCAAGATATTTTACCCGGCTATAAGGAACAAGCTTCACGTCTTCCACGCTCGCTGGGCT AACTTCAATCGGAAGGCGTATCAATATGCAATGAACCGTGACGATGCCTCTGCTTGTGCTATTGTTGGCTTGTAT AGGGCCGTGGAACAAGGTCAGATTACGCCAACCGAGCTGATGCATACATTGGACGAAGCACTATTTGCCAACATC GATGTGACGATTGGCAGCTTCTCTTGGATCCCACAATTCCTGGCTGAGGATCCCGGATTACAGACCGAGCTTAGA GCAGAGATCTCACAGACCAGATCCGACACAACTCCAGAGTCTTGGGTCAAATACATTGCCAGCAACACCACTCTG CTGGCAAGTTGTATCAATGAATCTGCGAGGCTGAAGCCAGTCACCAACTACACCTATGCGCAATCGATGCCCACT GACCGGGATGTGGGTGGATACCGCATTCCTCGTGGGACCTTCATGGTGGTTGACACCAATGCGCTGAATATCTGG GATGACGCGTGGGGCTCCGATAAAATGACCTTCCGGCCCCGGCGGTTCCTGGAGGAATCTAGGGCCAGCTTTCGG TATCGCTTTTGGCGTTTTGGCTTCGGGCCCCGCCAGTGTATTGCGCAAGCCTTGGCAGATACGATCCTCAAGGTG CTGGTTGCGTACACCGTCGAAAATTACGAGTTAAAGTCCGCTGGAAAGTCTGCTGTGAATGAGGAGGACGCCCGG AAACGAGGCGAAGCGTGGTTCAAGGTTGCCGAGCAGGAGATTATCCTGGAAGCGATATAG |