© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g646.t1 |
| Gene name | |
| Location | scaffold_01:1659159..1660589 |
| Strand | - |
| Gene length (bp) | 1430 |
| Transcript length (bp) | 1374 |
| Coding sequence length (bp) | 1374 |
| Protein length (aa) | 458 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01522 | Polysacc_deac_1 | Polysaccharide deacetylase | 4.3E-32 | 126 | 253 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | Yes |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 18 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 3.90 | 1.08 | 6.73 |
| 5d_25C | Five days - 25 degrees Celsius | 4.75 | 1.45 | 8.06 |
| 7d_25C | Seven days - 25 degrees Celsius | 5.54 | 1.76 | 9.32 |
| 10d_25C | Ten days - 25 degrees Celsius | 6.49 | 2.27 | 10.70 |
| 7d_15C | Seven days - 15 degrees Celsius | 11.56 | 4.87 | 18.25 |
| 7d_30C | Seven days - 30 degrees Celsius | 7.14 | 2.53 | 11.75 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.700325 | no |
| 3d_25C | 7d_25C | 0.442370 | no |
| 3d_25C | 7d_15C | 0.002761 | yes |
| 3d_25C | 7d_30C | 0.123554 | no |
| 3d_25C | 10d_25C | 0.206427 | no |
| 5d_25C | 7d_25C | 0.759363 | no |
| 5d_25C | 7d_15C | 0.006371 | yes |
| 5d_25C | 7d_30C | 0.305874 | no |
| 5d_25C | 10d_25C | 0.461356 | no |
| 7d_25C | 7d_15C | 0.032181 | yes |
| 7d_25C | 7d_30C | 0.570172 | no |
| 7d_25C | 10d_25C | 0.748235 | no |
| 7d_15C | 7d_30C | 0.170358 | no |
| 7d_15C | 10d_25C | 0.086404 | no |
| 7d_30C | 10d_25C | 0.854349 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g646.t1 MRIQPIWVATLATCVFAKLHVGPVHTVAIEQPQPETESHLDTRDAPNNLDYRCGPKIGKCPVGTCCSGAGFCGTS KAHCRSPDCKLDYGKCDAHRSPSGPPTKEIPRPHVGQVPYGPREIRSCAIPGTVALTFDDGPTRYTGDLLDLLDK YDAKATFFITGINNGKGSIDDLTLPWASLIERMHSSGHQIASHTWSHEDLSKITPSQRNEQIEKNEAALRNILGS FPTYMRPPYSSCSPDTECGNELGELGYHIILYDIDTDDYKNDSPDLIQRSKDIFDHQLLNSDPRTKSWLVIAHDA HEQTVHNLTEHMLKGIKRQGYRAITVGDCLRDPRPLWYRKDSRMPTQKKKPKNTASADPNKPISWDGSCGSNYTC LGSTYGFCCGSTSSCGNTTSHCGSGCQKDAGYCSVEAPYNGDAWDPKVQTKGHKSEADSDFRTIGTAAATSLFLA LIVAMWM* |
| Coding | >Pro_DTO377G3_2|g646.t1 ATGCGTATTCAACCCATCTGGGTCGCCACTTTGGCAACGTGTGTATTTGCTAAATTGCATGTCGGTCCTGTGCAT ACGGTTGCAATTGAACAACCTCAACCAGAAACCGAGTCTCATTTGGACACTCGTGATGCCCCCAACAATTTGGAC TATCGCTGTGGCCCCAAGATCGGCAAATGTCCGGTCGGTACATGCTGCTCGGGTGCAGGTTTCTGCGGCACGTCG AAGGCGCACTGTCGCTCTCCAGACTGCAAGCTTGACTACGGTAAATGTGACGCTCACCGATCGCCTTCTGGACCC CCAACCAAGGAAATCCCCCGTCCTCACGTCGGCCAAGTTCCGTACGGCCCTCGCGAGATTCGTTCATGCGCTATC CCCGGAACTGTTGCATTGACCTTCGACGATGGCCCGACACGTTACACTGGCGATCTGCTCGATTTGCTTGACAAA TACGATGCGAAGGCGACATTCTTCATCACTGGGATCAACAACGGAAAGGGCTCTATCGATGACCTCACCTTGCCA TGGGCTTCATTGATTGAACGCATGCACTCGAGTGGCCACCAGATTGCCAGTCATACATGGTCGCATGAGGACCTC AGTAAGATCACTCCTTCGCAACGCAATGAGCAAATTGAGAAGAACGAAGCTGCGCTGCGCAACATTCTCGGATCT TTCCCCACTTACATGCGGCCGCCTTATTCCAGCTGCAGCCCTGACACAGAGTGCGGAAATGAGCTGGGCGAGCTT GGATACCACATCATTTTGTATGACATTGACACGGATGACTATAAAAATGACAGTCCAGATCTGATTCAACGGTCT AAGGATATCTTTGATCACCAGCTTTTGAACAGCGACCCACGCACCAAATCATGGCTTGTCATTGCCCATGACGCC CATGAACAGACCGTCCACAACCTCACAGAGCACATGCTCAAGGGCATCAAGCGGCAAGGCTATCGTGCCATTACC GTCGGCGACTGTCTCCGTGATCCCAGGCCACTCTGGTACCGCAAGGATAGCCGGATGCCCACTCAGAAGAAGAAG CCCAAGAATACTGCTTCGGCAGATCCCAACAAGCCGATCTCTTGGGACGGGTCCTGTGGTTCCAACTACACTTGC CTTGGATCTACCTATGGCTTTTGCTGTGGTAGTACTAGCTCTTGTGGCAACACCACCAGTCATTGTGGAAGCGGC TGTCAAAAGGATGCCGGATATTGTTCCGTTGAGGCTCCTTACAATGGCGATGCCTGGGACCCGAAAGTCCAAACC AAGGGTCACAAGTCGGAAGCTGATTCTGATTTCCGAACCATTGGCACCGCGGCTGCAACATCGTTGTTCCTTGCT TTGATCGTTGCGATGTGGATGTGA |
| Transcript | >Pro_DTO377G3_2|g646.t1 ATGCGTATTCAACCCATCTGGGTCGCCACTTTGGCAACGTGTGTATTTGCTAAATTGCATGTCGGTCCTGTGCAT ACGGTTGCAATTGAACAACCTCAACCAGAAACCGAGTCTCATTTGGACACTCGTGATGCCCCCAACAATTTGGAC TATCGCTGTGGCCCCAAGATCGGCAAATGTCCGGTCGGTACATGCTGCTCGGGTGCAGGTTTCTGCGGCACGTCG AAGGCGCACTGTCGCTCTCCAGACTGCAAGCTTGACTACGGTAAATGTGACGCTCACCGATCGCCTTCTGGACCC CCAACCAAGGAAATCCCCCGTCCTCACGTCGGCCAAGTTCCGTACGGCCCTCGCGAGATTCGTTCATGCGCTATC CCCGGAACTGTTGCATTGACCTTCGACGATGGCCCGACACGTTACACTGGCGATCTGCTCGATTTGCTTGACAAA TACGATGCGAAGGCGACATTCTTCATCACTGGGATCAACAACGGAAAGGGCTCTATCGATGACCTCACCTTGCCA TGGGCTTCATTGATTGAACGCATGCACTCGAGTGGCCACCAGATTGCCAGTCATACATGGTCGCATGAGGACCTC AGTAAGATCACTCCTTCGCAACGCAATGAGCAAATTGAGAAGAACGAAGCTGCGCTGCGCAACATTCTCGGATCT TTCCCCACTTACATGCGGCCGCCTTATTCCAGCTGCAGCCCTGACACAGAGTGCGGAAATGAGCTGGGCGAGCTT GGATACCACATCATTTTGTATGACATTGACACGGATGACTATAAAAATGACAGTCCAGATCTGATTCAACGGTCT AAGGATATCTTTGATCACCAGCTTTTGAACAGCGACCCACGCACCAAATCATGGCTTGTCATTGCCCATGACGCC CATGAACAGACCGTCCACAACCTCACAGAGCACATGCTCAAGGGCATCAAGCGGCAAGGCTATCGTGCCATTACC GTCGGCGACTGTCTCCGTGATCCCAGGCCACTCTGGTACCGCAAGGATAGCCGGATGCCCACTCAGAAGAAGAAG CCCAAGAATACTGCTTCGGCAGATCCCAACAAGCCGATCTCTTGGGACGGGTCCTGTGGTTCCAACTACACTTGC CTTGGATCTACCTATGGCTTTTGCTGTGGTAGTACTAGCTCTTGTGGCAACACCACCAGTCATTGTGGAAGCGGC TGTCAAAAGGATGCCGGATATTGTTCCGTTGAGGCTCCTTACAATGGCGATGCCTGGGACCCGAAAGTCCAAACC AAGGGTCACAAGTCGGAAGCTGATTCTGATTTCCGAACCATTGGCACCGCGGCTGCAACATCGTTGTTCCTTGCT TTGATCGTTGCGATGTGGATGTGA |
| Gene | >Pro_DTO377G3_2|g646.t1 ATGCGTATTCAACCCATCTGGGTCGCCACTTTGGCAACGTGTGTATTTGCTAAATTGCATGTCGGTCCTGTGCAT ACGGTTGCAATTGAACAACCTCAACCAGAAACCGAGTCTCATTTGGACACTCGTGATGCCCCCAACAATTTGGAC TATCGCTGTGGCCCCAAGATCGGCAAATGTCCGGTCGGTACATGCTGCTCGGGTGCAGGTATGTTCTCAAAATCC TGTTAGCTTGAGCACCTTACTGATGTCATTCTACGATAGGTTTCTGCGGCACGTCGAAGGCGCACTGTCGCTCTC CAGACTGCAAGCTTGACTACGGTAAATGTGACGCTCACCGATCGCCTTCTGGACCCCCAACCAAGGAAATCCCCC GTCCTCACGTCGGCCAAGTTCCGTACGGCCCTCGCGAGATTCGTTCATGCGCTATCCCCGGAACTGTTGCATTGA CCTTCGACGATGGCCCGACACGTTACACTGGCGATCTGCTCGATTTGCTTGACAAATACGATGCGAAGGCGACAT TCTTCATCACTGGGATCAACAACGGAAAGGGCTCTATCGATGACCTCACCTTGCCATGGGCTTCATTGATTGAAC GCATGCACTCGAGTGGCCACCAGATTGCCAGTCATACATGGTCGCATGAGGACCTCAGTAAGATCACTCCTTCGC AACGCAATGAGCAAATTGAGAAGAACGAAGCTGCGCTGCGCAACATTCTCGGATCTTTCCCCACTTACATGCGGC CGCCTTATTCCAGCTGCAGCCCTGACACAGAGTGCGGAAATGAGCTGGGCGAGCTTGGATACCACATCATTTTGT ATGACATTGACACGGATGACTATAAAAATGACAGTCCAGATCTGATTCAACGGTCTAAGGATATCTTTGATCACC AGCTTTTGAACAGCGACCCACGCACCAAATCATGGCTTGTCATTGCCCATGACGCCCATGAACAGACCGTCCACA ACCTCACAGAGCACATGCTCAAGGGCATCAAGCGGCAAGGCTATCGTGCCATTACCGTCGGCGACTGTCTCCGTG ATCCCAGGCCACTCTGGTACCGCAAGGATAGCCGGATGCCCACTCAGAAGAAGAAGCCCAAGAATACTGCTTCGG CAGATCCCAACAAGCCGATCTCTTGGGACGGGTCCTGTGGTTCCAACTACACTTGCCTTGGATCTACCTATGGCT TTTGCTGTGGTAGTACTAGCTCTTGTGGCAACACCACCAGTCATTGTGGAAGCGGCTGTCAAAAGGATGCCGGAT ATTGTTCCGTTGAGGCTCCTTACAATGGCGATGCCTGGGACCCGAAAGTCCAAACCAAGGGTCACAAGTCGGAAG CTGATTCTGATTTCCGAACCATTGGCACCGCGGCTGCAACATCGTTGTTCCTTGCTTTGATCGTTGCGATGTGGA TGTGA |