© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6451.t1 |
| Gene name | |
| Location | scaffold_17:232563..234359 |
| Strand | + |
| Gene length (bp) | 1796 |
| Transcript length (bp) | 1578 |
| Coding sequence length (bp) | 1578 |
| Protein length (aa) | 526 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00704 | Glyco_hydro_18 | Glycosyl hydrolases family 18 | 1.4E-23 | 31 | 315 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 23 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 283.72 | 163.79 | 403.65 |
| 5d_25C | Five days - 25 degrees Celsius | 148.16 | 82.76 | 213.57 |
| 7d_25C | Seven days - 25 degrees Celsius | 138.49 | 75.89 | 201.09 |
| 10d_25C | Ten days - 25 degrees Celsius | 92.86 | 49.66 | 136.05 |
| 7d_15C | Seven days - 15 degrees Celsius | 127.26 | 54.46 | 200.06 |
| 7d_30C | Seven days - 30 degrees Celsius | 284.11 | 139.40 | 428.83 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.003625 | yes |
| 3d_25C | 7d_25C | 0.002297 | yes |
| 3d_25C | 7d_15C | 0.001804 | yes |
| 3d_25C | 7d_30C | 0.996860 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.852108 | no |
| 5d_25C | 7d_15C | 0.662850 | no |
| 5d_25C | 7d_30C | 0.007091 | yes |
| 5d_25C | 10d_25C | 0.054965 | no |
| 7d_25C | 7d_15C | 0.831855 | no |
| 7d_25C | 7d_30C | 0.002297 | yes |
| 7d_25C | 10d_25C | 0.115258 | no |
| 7d_15C | 7d_30C | 0.003197 | yes |
| 7d_15C | 10d_25C | 0.301050 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6451.t1 MRRYLCLLAWSILLASFGGAQAKLDLNSTSNIVVYWGQNSFNGKGDQAQQPLAHYCDNEDIDVIPMAFNMMVNGP GGAPEIDFSVTSKDCDVFEGTELKNCPSIAKDIQTCQKKNKTILLSIGGATYSEGGFKSDEDAKDGAKLMWETFG PKKENSTALRPFGDAALDGFDLDFEANVQHMAPFANELRSLMKADKSKQDFYLTSAPQCPYPDEADKEILNGPVY IDAIWVQFYNNYCGVNNFNTDSSSNKYNFEEWDTWAKTVSQNKDVKVIVGVPAFTSAASTGYIPASELAKVIEYT KKFDSFGGVMMWDATQAYENDGFIEDVRESLGSANDSGSSSPDPVSTSASASTSTDPTKTTTTTTTTTTTRTTTT TTTTTSPSSNAPVSSHSSSSSSSASASHKGAEETTTTTTTTTKEHKPTVTTTTQKPVASTTQPKPTTIVTTTAKP KASSTTSAETTATPTSNGGPNSPSDDDNSDDGPNDESGSNLLGSILGNDLLGLLGGLRKANKAASGITHGLANNL * |
| Coding | >Pro_DTO377G3_2|g6451.t1 ATGCGCCGGTATCTGTGTCTTCTTGCTTGGTCTATTTTGCTGGCTTCATTCGGAGGAGCACAGGCGAAGCTGGAC TTAAACTCGACTAGCAACATCGTTGTTTACTGGGGCCAGAATTCATTCAATGGAAAGGGGGATCAGGCACAGCAG CCTCTTGCACACTACTGCGATAATGAGGACATTGATGTGATACCAATGGCCTTCAATATGATGGTCAACGGCCCA GGAGGCGCTCCAGAGATTGATTTCTCTGTTACCAGCAAGGACTGCGATGTCTTCGAAGGCACAGAATTAAAGAAC TGTCCTTCAATTGCGAAGGACATCCAAACGTGCCAAAAGAAGAACAAGACGATCCTTCTTTCAATCGGTGGAGCG ACCTACAGCGAGGGCGGCTTCAAGTCCGACGAAGATGCCAAGGACGGTGCGAAGCTGATGTGGGAGACCTTTGGC CCCAAGAAAGAGAATTCAACCGCTCTTCGTCCCTTCGGTGACGCCGCCTTGGATGGGTTCGACTTGGACTTTGAG GCCAATGTCCAACACATGGCCCCCTTCGCCAACGAGCTGCGCTCACTGATGAAGGCGGATAAGAGCAAGCAGGAT TTCTACTTGACATCGGCACCGCAATGCCCCTACCCTGACGAGGCAGACAAAGAGATCCTCAACGGTCCTGTTTAC ATTGACGCTATCTGGGTACAGTTCTATAATAACTATTGCGGCGTCAACAATTTCAACACCGACAGCTCAAGCAAC AAATACAACTTCGAGGAGTGGGACACCTGGGCTAAGACCGTGTCACAGAACAAAGATGTAAAGGTCATCGTCGGC GTCCCAGCCTTTACTTCTGCAGCTAGCACGGGGTATATCCCGGCGTCCGAGTTGGCCAAGGTGATTGAATACACG AAGAAGTTCGACAGTTTCGGAGGTGTTATGATGTGGGATGCCACACAGGCATACGAAAACGATGGATTTATCGAG GACGTGCGAGAAAGCTTAGGTTCTGCGAATGATTCCGGTTCGTCGTCGCCCGACCCGGTGTCAACCTCGGCATCT GCCTCTACGTCCACTGACCCAACGAAGACAACCACCACAACTACCACAACCACGACTACGAGAACGACGACGACG ACGACGACGACGACTTCGCCATCTTCCAATGCACCCGTCTCTTCACACTCATCCTCCTCCTCCTCATCTGCTTCT GCTTCGCACAAGGGAGCTGAAGAAACAACCACCACCACCACCACCACCACCAAAGAACATAAGCCTACCGTTACG ACCACCACGCAAAAGCCTGTCGCTTCCACTACCCAACCAAAACCGACTACTATCGTCACTACAACCGCAAAGCCC AAGGCTTCCTCAACCACATCTGCGGAGACAACTGCGACTCCCACCTCGAATGGTGGCCCTAACTCGCCGAGCGAC GACGATAATTCAGACGATGGACCAAATGATGAGTCGGGTAGTAATCTCCTCGGCTCTATCCTCGGGAACGACCTT CTCGGTCTGCTGGGTGGCCTCCGTAAGGCGAACAAAGCTGCTAGCGGTATCACCCATGGTCTAGCCAACAATCTC TGA |
| Transcript | >Pro_DTO377G3_2|g6451.t1 ATGCGCCGGTATCTGTGTCTTCTTGCTTGGTCTATTTTGCTGGCTTCATTCGGAGGAGCACAGGCGAAGCTGGAC TTAAACTCGACTAGCAACATCGTTGTTTACTGGGGCCAGAATTCATTCAATGGAAAGGGGGATCAGGCACAGCAG CCTCTTGCACACTACTGCGATAATGAGGACATTGATGTGATACCAATGGCCTTCAATATGATGGTCAACGGCCCA GGAGGCGCTCCAGAGATTGATTTCTCTGTTACCAGCAAGGACTGCGATGTCTTCGAAGGCACAGAATTAAAGAAC TGTCCTTCAATTGCGAAGGACATCCAAACGTGCCAAAAGAAGAACAAGACGATCCTTCTTTCAATCGGTGGAGCG ACCTACAGCGAGGGCGGCTTCAAGTCCGACGAAGATGCCAAGGACGGTGCGAAGCTGATGTGGGAGACCTTTGGC CCCAAGAAAGAGAATTCAACCGCTCTTCGTCCCTTCGGTGACGCCGCCTTGGATGGGTTCGACTTGGACTTTGAG GCCAATGTCCAACACATGGCCCCCTTCGCCAACGAGCTGCGCTCACTGATGAAGGCGGATAAGAGCAAGCAGGAT TTCTACTTGACATCGGCACCGCAATGCCCCTACCCTGACGAGGCAGACAAAGAGATCCTCAACGGTCCTGTTTAC ATTGACGCTATCTGGGTACAGTTCTATAATAACTATTGCGGCGTCAACAATTTCAACACCGACAGCTCAAGCAAC AAATACAACTTCGAGGAGTGGGACACCTGGGCTAAGACCGTGTCACAGAACAAAGATGTAAAGGTCATCGTCGGC GTCCCAGCCTTTACTTCTGCAGCTAGCACGGGGTATATCCCGGCGTCCGAGTTGGCCAAGGTGATTGAATACACG AAGAAGTTCGACAGTTTCGGAGGTGTTATGATGTGGGATGCCACACAGGCATACGAAAACGATGGATTTATCGAG GACGTGCGAGAAAGCTTAGGTTCTGCGAATGATTCCGGTTCGTCGTCGCCCGACCCGGTGTCAACCTCGGCATCT GCCTCTACGTCCACTGACCCAACGAAGACAACCACCACAACTACCACAACCACGACTACGAGAACGACGACGACG ACGACGACGACGACTTCGCCATCTTCCAATGCACCCGTCTCTTCACACTCATCCTCCTCCTCCTCATCTGCTTCT GCTTCGCACAAGGGAGCTGAAGAAACAACCACCACCACCACCACCACCACCAAAGAACATAAGCCTACCGTTACG ACCACCACGCAAAAGCCTGTCGCTTCCACTACCCAACCAAAACCGACTACTATCGTCACTACAACCGCAAAGCCC AAGGCTTCCTCAACCACATCTGCGGAGACAACTGCGACTCCCACCTCGAATGGTGGCCCTAACTCGCCGAGCGAC GACGATAATTCAGACGATGGACCAAATGATGAGTCGGGTAGTAATCTCCTCGGCTCTATCCTCGGGAACGACCTT CTCGGTCTGCTGGGTGGCCTCCGTAAGGCGAACAAAGCTGCTAGCGGTATCACCCATGGTCTAGCCAACAATCTC TGA |
| Gene | >Pro_DTO377G3_2|g6451.t1 ATGCGCCGGTATCTGTGTCTTCTTGCTTGGTCTATTTTGCTGGCTTCATTCGGAGGAGCACAGGCGAAGCTGGAC TTAAACTCGACTAGCAACATCGTTGTTTACTGGGGTATGTGCTTGTTGGTGGTTTGGATTAATTCGTACTTACAT GAGACATACTGAAGGCCAGAATTCATTCAATGGAAAGGGGGATCAGGCACAGCAGCCTCTTGCACACTACTGCGA TAGTGAGTGAATGATATATCTTCAATGTGGTCGTTCAAACTAACCCGAGCCTCTAGATGAGGACATTGATGTAGG AACTAGGTCATCAGGAACGCTTTCAAAACAATGGGCTAACAAAATGGCATAGGTGATACCAATGGCCTTCAATAT GATGGTCAACGGCCCAGGAGGCGCTCCAGAGATTGATTTCTCTGTTACCAGCAAGGACTGCGATGTCTTCGAAGG CACAGAATTAAAGAACTGTCCTTCAATTGCGTAAGAACATATCCCGTCCGCTGACCATTTCTAGACGGCTGACAG GATCTAGGAAGGACATCCAAACGTGCCAAAAGAAGAACAAGACGATCCTTCTTTCAATCGGTGGAGCGACCTACA GCGAGGGCGGCTTCAAGTCCGACGAAGATGCCAAGGACGGTGCGAAGCTGATGTGGGAGACCTTTGGCCCCAAGA AAGAGAATTCAACCGCTCTTCGTCCCTTCGGTGACGCCGCCTTGGATGGGTTCGACTTGGACTTTGAGGCCAATG TCCAACACATGGCCCCCTTCGCCAACGAGCTGCGCTCACTGATGAAGGCGGATAAGAGCAAGCAGGATTTCTACT TGACATCGGCACCGCAATGCCCCTACCCTGACGAGGCAGACAAAGAGATCCTCAACGGTCCTGTTTACATTGACG CTATCTGGGTACAGTTCTATAATAACTATTGCGGCGTCAACAATTTCAACACCGACAGCTCAAGCAACAAATACA ACTTCGAGGAGTGGGACACCTGGGCTAAGACCGTGTCACAGAACAAAGATGTAAAGGTCATCGTCGGCGTCCCAG CCTTTACTTCTGCAGCTAGCACGGGGTATATCCCGGCGTCCGAGTTGGCCAAGGTGATTGAATACACGAAGAAGT TCGACAGTTTCGGAGGTGTTATGATGTGGGATGCCACACAGGCATACGAAAACGATGGATTTATCGAGGACGTGC GAGAAAGCTTAGGTTCTGCGAATGATTCCGGTTCGTCGTCGCCCGACCCGGTGTCAACCTCGGCATCTGCCTCTA CGTCCACTGACCCAACGAAGACAACCACCACAACTACCACAACCACGACTACGAGAACGACGACGACGACGACGA CGACGACTTCGCCATCTTCCAATGCACCCGTCTCTTCACACTCATCCTCCTCCTCCTCATCTGCTTCTGCTTCGC ACAAGGGAGCTGAAGAAACAACCACCACCACCACCACCACCACCAAAGAACATAAGCCTACCGTTACGACCACCA CGCAAAAGCCTGTCGCTTCCACTACCCAACCAAAACCGACTACTATCGTCACTACAACCGCAAAGCCCAAGGCTT CCTCAACCACATCTGCGGAGACAACTGCGACTCCCACCTCGAATGGTGGCCCTAACTCGCCGAGCGACGACGATA ATTCAGACGATGGACCAAATGATGAGTCGGGTAGTAATCTCCTCGGCTCTATCCTCGGGAACGACCTTCTCGGTC TGCTGGGTGGCCTCCGTAAGGCGAACAAAGCTGCTAGCGGTATCACCCATGGTCTAGCCAACAATCTCTGA |