© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6449.t1 |
| Gene name | |
| Location | scaffold_17:227885..228976 |
| Strand | + |
| Gene length (bp) | 1091 |
| Transcript length (bp) | 915 |
| Coding sequence length (bp) | 915 |
| Protein length (aa) | 305 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04193 | PQ-loop | PQ loop repeat | 1.0E-04 | 27 | 65 |
| PF04193 | PQ-loop | PQ loop repeat | 9.9E-14 | 154 | 206 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 39 | 61 | 22 |
| 2 | 68 | 87 | 19 |
| 3 | 128 | 147 | 19 |
| 4 | 152 | 174 | 22 |
| 5 | 184 | 206 | 22 |
| 6 | 213 | 235 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6449.t1 MSLFQAAFDYAAPVFLISSPVTSYADQIFSIHRSRSSAGFSLDIPLIMLISSILKIFFWFGEYYSRTLLTQAIVM IVVQITMLKVALDNRPSAGVRNGIEHTPFSGGNSDGSSSRPYEFWQWKATKPYWMCLAYFVGMLTIIHLTPVAQS RFYISLLGYIGLAVEAILPIPQILANHQSGSCKGFRFSVIAAWILGDTMKMSYFFNSTETIPWAFKLCGIFQCVC DFYLGFQFYFFTRNTPSKTPSHSLSNSLSNSFAIPHSHSNSLSHNFPVSDSHSRSNSQAASESMENDRWGHHEKD IRMD* |
| Coding | >Pro_DTO377G3_2|g6449.t1 ATGTCTCTTTTCCAGGCCGCCTTTGACTATGCCGCACCTGTCTTCCTTATAAGCTCTCCGGTCACATCCTATGCC GACCAAATCTTCAGCATTCATCGCTCAAGAAGCTCGGCGGGCTTCTCCTTAGACATTCCTTTGATTATGCTGATC TCGTCGATTCTGAAGATTTTCTTTTGGTTCGGCGAGTACTACTCAAGGACTTTGTTAACGCAAGCAATTGTCATG ATCGTGGTGCAGATCACGATGCTCAAGGTTGCACTCGATAATCGGCCCTCTGCCGGGGTGAGAAATGGAATTGAG CACACACCCTTCAGCGGCGGTAACTCCGATGGTTCATCCTCAAGACCTTATGAGTTCTGGCAGTGGAAGGCTACC AAGCCATATTGGATGTGTCTAGCCTACTTCGTCGGAATGTTGACCATCATCCACCTTACCCCGGTCGCTCAATCG CGATTCTATATCAGCCTCCTTGGCTACATCGGACTCGCCGTCGAAGCTATCCTCCCTATCCCTCAAATCCTCGCC AACCACCAATCCGGCTCGTGCAAGGGCTTCCGATTCTCCGTTATTGCGGCATGGATTCTCGGTGACACTATGAAA ATGAGTTACTTCTTCAACAGCACAGAGACCATCCCCTGGGCGTTCAAGCTCTGTGGTATCTTCCAGTGTGTGTGC GACTTCTACCTGGGCTTCCAGTTCTACTTCTTCACTCGCAACACCCCATCTAAAACACCATCCCACTCGCTCTCC AACTCGCTCTCTAACTCGTTTGCTATCCCACACTCACACTCCAACTCACTCTCGCACAATTTCCCTGTCTCCGAT TCTCACTCCCGCTCCAACTCCCAGGCTGCAAGCGAGTCTATGGAGAATGACCGCTGGGGTCATCACGAGAAGGAC ATCCGCATGGACTGA |
| Transcript | >Pro_DTO377G3_2|g6449.t1 ATGTCTCTTTTCCAGGCCGCCTTTGACTATGCCGCACCTGTCTTCCTTATAAGCTCTCCGGTCACATCCTATGCC GACCAAATCTTCAGCATTCATCGCTCAAGAAGCTCGGCGGGCTTCTCCTTAGACATTCCTTTGATTATGCTGATC TCGTCGATTCTGAAGATTTTCTTTTGGTTCGGCGAGTACTACTCAAGGACTTTGTTAACGCAAGCAATTGTCATG ATCGTGGTGCAGATCACGATGCTCAAGGTTGCACTCGATAATCGGCCCTCTGCCGGGGTGAGAAATGGAATTGAG CACACACCCTTCAGCGGCGGTAACTCCGATGGTTCATCCTCAAGACCTTATGAGTTCTGGCAGTGGAAGGCTACC AAGCCATATTGGATGTGTCTAGCCTACTTCGTCGGAATGTTGACCATCATCCACCTTACCCCGGTCGCTCAATCG CGATTCTATATCAGCCTCCTTGGCTACATCGGACTCGCCGTCGAAGCTATCCTCCCTATCCCTCAAATCCTCGCC AACCACCAATCCGGCTCGTGCAAGGGCTTCCGATTCTCCGTTATTGCGGCATGGATTCTCGGTGACACTATGAAA ATGAGTTACTTCTTCAACAGCACAGAGACCATCCCCTGGGCGTTCAAGCTCTGTGGTATCTTCCAGTGTGTGTGC GACTTCTACCTGGGCTTCCAGTTCTACTTCTTCACTCGCAACACCCCATCTAAAACACCATCCCACTCGCTCTCC AACTCGCTCTCTAACTCGTTTGCTATCCCACACTCACACTCCAACTCACTCTCGCACAATTTCCCTGTCTCCGAT TCTCACTCCCGCTCCAACTCCCAGGCTGCAAGCGAGTCTATGGAGAATGACCGCTGGGGTCATCACGAGAAGGAC ATCCGCATGGACTGA |
| Gene | >Pro_DTO377G3_2|g6449.t1 ATGTCTCTTTTCCAGGCCGCCTTTGACTATGCCGCACCTGTCTTGTACGTGGTCGTAAATGACTGACCCACGGGT TCCCAGTGCTAATCATGCTCGTGTGCAGCCTTATAAGCTCTCCGGTCACATCCTATGCCGACCAAATCTTCAGCA TTCATCGCTCAAGAAGCTCGGCGGGCTTCTCCTTAGACATTCCTTTGATTATGCTGATCTCGTCGATTCTGAAGT AAGATTCCGATCGGCAGCGGGTTGATATTCGAGGCGGCAGTTCCATGTTAACATTATTAGGATTTTCTTTTGGTT CGGCGAGTACTACTCAAGGACTTTGTTAACGCAAGCAATTGTCATGATCGTGGTGCAGATCACGATGCTCAAGGT TGCACTCGATAATCGGCCCTCTGCCGGGGTGAGAAATGGAATTGAGCACACACCCTTCAGCGGCGGTAACTCCGA TGGTTCATCCTCAAGACCTTATGAGTTCTGGCAGTGGAAGGCTACCAAGCCGTAAGTCTCGGCATCTCCAACCAC TGCGATCAAAGCTGATTACCCATTTTCGAAGATATTGGATGTGTCTAGCCTACTTCGTCGGAATGTTGACCATCA TCCACCTTACCCCGGTCGCTCAATCGCGATTCTATATCAGCCTCCTTGGCTACATCGGACTCGCCGTCGAAGCTA TCCTCCCTATCCCTCAAATCCTCGCCAACCACCAATCCGGCTCGTGCAAGGGCTTCCGATTCTCCGTTATTGCGG CATGGATTCTCGGTGACACTATGAAAATGAGTTACTTCTTCAACAGCACAGAGACCATCCCCTGGGCGTTCAAGC TCTGTGGTATCTTCCAGTGTGTGTGCGACTTCTACCTGGGCTTCCAGTTCTACTTCTTCACTCGCAACACCCCAT CTAAAACACCATCCCACTCGCTCTCCAACTCGCTCTCTAACTCGTTTGCTATCCCACACTCACACTCCAACTCAC TCTCGCACAATTTCCCTGTCTCCGATTCTCACTCCCGCTCCAACTCCCAGGCTGCAAGCGAGTCTATGGAGAATG ACCGCTGGGGTCATCACGAGAAGGACATCCGCATGGACTGA |