© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6446.t1 |
| Gene name | |
| Location | scaffold_17:218937..221878 |
| Strand | + |
| Gene length (bp) | 2941 |
| Transcript length (bp) | 2880 |
| Coding sequence length (bp) | 2880 |
| Protein length (aa) | 960 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01055 | Glyco_hydro_31 | Glycosyl hydrolases family 31 | 5.2E-139 | 364 | 811 |
| PF13802 | Gal_mutarotas_2 | Galactose mutarotase-like | 1.7E-24 | 254 | 329 |
| PF17137 | DUF5110 | Domain of unknown function (DUF5110) | 5.3E-07 | 832 | 869 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 30 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 30 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 61.01 | 37.27 | 84.74 |
| 5d_25C | Five days - 25 degrees Celsius | 40.14 | 24.44 | 55.84 |
| 7d_25C | Seven days - 25 degrees Celsius | 33.06 | 19.89 | 46.23 |
| 10d_25C | Ten days - 25 degrees Celsius | 20.45 | 11.92 | 28.98 |
| 7d_15C | Seven days - 15 degrees Celsius | 37.17 | 22.17 | 52.16 |
| 7d_30C | Seven days - 30 degrees Celsius | 50.21 | 29.61 | 70.82 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.049197 | yes |
| 3d_25C | 7d_25C | 0.002297 | yes |
| 3d_25C | 7d_15C | 0.020921 | yes |
| 3d_25C | 7d_30C | 0.447496 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.444480 | no |
| 5d_25C | 7d_15C | 0.802600 | no |
| 5d_25C | 7d_30C | 0.365664 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.691342 | no |
| 7d_25C | 7d_30C | 0.059534 | no |
| 7d_25C | 10d_25C | 0.029538 | yes |
| 7d_15C | 7d_30C | 0.201950 | no |
| 7d_15C | 10d_25C | 0.002297 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6446.t1 MARSLPAPRWAMLLSLVILLVCIVVPGFAVKHKDFKTCDQSGFCKRNRAYADDASSQGISWSSPYELDPATIHFK DGMLTGVILKTTTANEKVRLPLTVSFLESGAARIVVDEEKRMKGDIEMRHGSQANKKRYNEAEKWAIVGGLEVSK SATLNAQSETGFTNVLYGPDDKFQAIVRHAPFGVEFQRDGQTHVQLNHQGFLNMEHWRPKVDAEDGESGEDESTW WEETFGGNTDSKPRGPESIALDITFPGYSHVFGIPEHADSLSLKETRGGSGNHENPYRLYNSDVFEYELESPMTL YGAIPLMQAHRKSSTVGVFWLNAAETWIDIVKSTASSNPLALGARSKTDTQTHWMSESGQIDLFVFLGPSPNDIS KTYGELTGYTQLPQQFAIGYHQCRWNYVTDEDVKEVNAKFDKYQIPYDVIWLDLEYTDDRKYFTWDPLTFPDPTG MQQKLDESERKLVVLIDPHIKNADKYFVSEELRSKNLAVLNKDGEIYDGWCWPGSSNWVDCFNPAAHAWWATLHK FDKFKGSLQNLFIWNDMNEPSVFNGPDMTMPKDNLHHGNWEHRDVHNLNGLTLVNATYKAMLERKKGEMRRPFIL TRSYYSGAQRVSAMWTGDNQATWDHLGASLPMVLTNGITGFPFAGADVGGFFHNPDKDLLTRWYQTGIWYPFFRA HAHIDTRRREPYLISEPHRSYIAQAIRLRYQLMPAWYTAFHEASVNGTPIVRPQYYMFPEDEQGFAIDDQLYLAS TGLLVKPVVQENTHSAEVYISDDEKYYDYFDFTVYQGAGKKHTVPAPEDKVPVLIQGGHIIPRKDRPRRSTGLMR WDPYTLVITLDKNGEAEGSLYVDDGETFDYERGAYIHRRFNYRDSVLSSKDIGTNGPKTAEYLKTMAGVTVERVV IVDPPAEWKAKNIVSVIEDGAKSGSTASLEFYEQEAGRASYVVVKKPNVGIGKAWRIEF* |
| Coding | >Pro_DTO377G3_2|g6446.t1 ATGGCCAGGAGTCTACCTGCGCCCCGTTGGGCAATGTTGCTCTCCCTGGTTATCCTTCTCGTCTGCATTGTGGTC CCCGGTTTTGCGGTCAAACACAAGGATTTCAAGACTTGCGATCAGTCCGGGTTCTGCAAACGAAATCGTGCCTAC GCCGATGACGCCTCTTCTCAAGGCATTTCATGGAGCTCACCTTACGAGCTAGATCCCGCCACTATACATTTCAAG GATGGAATGCTTACTGGAGTCATTTTGAAAACCACGACTGCCAATGAAAAGGTCCGGCTACCTCTCACGGTGTCT TTCTTGGAATCGGGAGCAGCCCGCATTGTGGTGGATGAAGAGAAGCGGATGAAGGGCGACATTGAAATGCGACAT GGCAGTCAAGCAAACAAGAAACGATATAATGAAGCCGAAAAATGGGCTATCGTGGGTGGTTTAGAAGTCAGCAAG TCGGCCACGTTGAATGCCCAGAGCGAAACTGGATTCACGAACGTCTTGTACGGACCGGACGACAAATTCCAAGCG ATCGTTCGCCATGCGCCATTTGGAGTCGAATTCCAGCGGGATGGACAGACCCATGTTCAATTGAACCACCAAGGC TTCCTGAACATGGAGCACTGGCGACCGAAGGTAGATGCCGAAGACGGCGAATCCGGCGAAGATGAGAGCACCTGG TGGGAGGAGACGTTTGGGGGAAATACCGACTCGAAGCCACGTGGTCCCGAGAGTATTGCTCTTGATATTACCTTC CCCGGTTATAGTCATGTATTTGGTATCCCAGAGCACGCAGATTCGCTCTCGCTCAAGGAGACTAGGGGTGGATCT GGTAACCATGAGAACCCTTATCGTCTATACAACTCCGATGTTTTCGAGTATGAACTCGAAAGCCCGATGACCTTG TACGGAGCCATCCCGCTGATGCAAGCCCACCGCAAGAGCTCCACTGTCGGGGTCTTCTGGCTCAATGCAGCGGAA ACGTGGATCGATATTGTCAAGTCCACTGCCTCCTCCAACCCCCTGGCCTTGGGCGCCCGCTCCAAAACAGACACC CAGACTCATTGGATGTCTGAATCCGGTCAGATTGACCTGTTCGTCTTCCTCGGGCCGTCACCGAATGATATCAGT AAAACATATGGTGAACTCACAGGATATACACAATTGCCCCAGCAGTTCGCCATTGGATATCACCAATGCCGTTGG AACTATGTTACGGACGAGGATGTCAAGGAAGTCAACGCCAAATTTGACAAGTACCAGATTCCATACGATGTGATC TGGCTTGATCTTGAATATACCGATGACCGGAAATACTTCACCTGGGACCCTCTCACCTTCCCTGATCCTACGGGT ATGCAGCAAAAGCTCGATGAAAGTGAGCGAAAGCTTGTGGTTTTGATCGATCCTCACATCAAGAACGCGGACAAG TACTTCGTTTCAGAAGAGCTTAGAAGCAAAAACCTCGCTGTGCTGAACAAGGATGGCGAAATCTATGATGGATGG TGCTGGCCAGGTTCCTCGAACTGGGTCGACTGCTTTAACCCCGCTGCGCATGCCTGGTGGGCCACGCTACACAAG TTTGACAAATTCAAGGGATCGCTTCAGAATCTTTTCATCTGGAATGATATGAATGAACCCTCTGTTTTTAACGGG CCTGACATGACCATGCCCAAGGACAACTTGCATCATGGAAACTGGGAACATCGCGATGTTCACAACCTTAATGGT CTCACCCTTGTGAACGCCACCTACAAAGCAATGCTGGAGCGCAAAAAGGGGGAGATGCGCCGGCCATTCATCTTG ACGCGCTCGTACTACTCCGGGGCCCAGCGGGTGTCTGCTATGTGGACTGGAGACAACCAGGCCACCTGGGACCAC CTAGGGGCTTCTCTCCCCATGGTCCTGACCAACGGTATCACAGGCTTCCCCTTCGCTGGCGCAGATGTCGGAGGA TTCTTCCATAATCCTGATAAGGACCTTTTGACTCGATGGTACCAGACAGGTATATGGTATCCCTTCTTCCGCGCG CATGCTCACATCGATACCCGTCGCCGTGAGCCGTATCTGATCAGCGAGCCCCACCGGTCCTACATCGCTCAGGCA ATCCGTCTGAGGTACCAACTGATGCCTGCTTGGTATACCGCCTTCCACGAAGCCTCCGTTAACGGCACGCCAATC GTTCGCCCTCAGTATTACATGTTCCCAGAGGACGAGCAAGGCTTTGCCATCGATGATCAGCTGTACCTTGCTTCC ACGGGTCTTCTCGTCAAGCCTGTTGTGCAGGAGAACACGCATAGTGCAGAGGTATATATCTCCGACGACGAGAAG TACTATGACTACTTTGATTTCACCGTCTACCAGGGTGCGGGCAAGAAACACACCGTCCCTGCGCCAGAGGACAAG GTTCCTGTGTTGATCCAGGGTGGTCACATCATTCCCCGCAAGGACCGTCCTCGTCGCAGTACCGGTCTGATGCGA TGGGACCCGTACACACTAGTCATTACCCTAGACAAGAATGGCGAGGCGGAAGGCAGTCTGTACGTGGACGATGGC GAGACGTTCGACTACGAGCGTGGCGCCTACATTCACCGCCGCTTCAACTACCGCGACTCGGTGTTGTCGTCGAAG GACATTGGTACCAATGGACCTAAGACTGCTGAGTACCTCAAGACCATGGCTGGTGTGACAGTCGAGCGGGTGGTG ATCGTTGACCCTCCCGCTGAATGGAAGGCTAAGAACATCGTGAGTGTCATTGAAGATGGAGCCAAGTCAGGCTCT ACGGCCTCCTTGGAGTTCTACGAGCAGGAGGCCGGGAGGGCATCCTATGTTGTGGTGAAGAAGCCGAATGTTGGT ATTGGAAAGGCATGGCGGATTGAGTTCTGA |
| Transcript | >Pro_DTO377G3_2|g6446.t1 ATGGCCAGGAGTCTACCTGCGCCCCGTTGGGCAATGTTGCTCTCCCTGGTTATCCTTCTCGTCTGCATTGTGGTC CCCGGTTTTGCGGTCAAACACAAGGATTTCAAGACTTGCGATCAGTCCGGGTTCTGCAAACGAAATCGTGCCTAC GCCGATGACGCCTCTTCTCAAGGCATTTCATGGAGCTCACCTTACGAGCTAGATCCCGCCACTATACATTTCAAG GATGGAATGCTTACTGGAGTCATTTTGAAAACCACGACTGCCAATGAAAAGGTCCGGCTACCTCTCACGGTGTCT TTCTTGGAATCGGGAGCAGCCCGCATTGTGGTGGATGAAGAGAAGCGGATGAAGGGCGACATTGAAATGCGACAT GGCAGTCAAGCAAACAAGAAACGATATAATGAAGCCGAAAAATGGGCTATCGTGGGTGGTTTAGAAGTCAGCAAG TCGGCCACGTTGAATGCCCAGAGCGAAACTGGATTCACGAACGTCTTGTACGGACCGGACGACAAATTCCAAGCG ATCGTTCGCCATGCGCCATTTGGAGTCGAATTCCAGCGGGATGGACAGACCCATGTTCAATTGAACCACCAAGGC TTCCTGAACATGGAGCACTGGCGACCGAAGGTAGATGCCGAAGACGGCGAATCCGGCGAAGATGAGAGCACCTGG TGGGAGGAGACGTTTGGGGGAAATACCGACTCGAAGCCACGTGGTCCCGAGAGTATTGCTCTTGATATTACCTTC CCCGGTTATAGTCATGTATTTGGTATCCCAGAGCACGCAGATTCGCTCTCGCTCAAGGAGACTAGGGGTGGATCT GGTAACCATGAGAACCCTTATCGTCTATACAACTCCGATGTTTTCGAGTATGAACTCGAAAGCCCGATGACCTTG TACGGAGCCATCCCGCTGATGCAAGCCCACCGCAAGAGCTCCACTGTCGGGGTCTTCTGGCTCAATGCAGCGGAA ACGTGGATCGATATTGTCAAGTCCACTGCCTCCTCCAACCCCCTGGCCTTGGGCGCCCGCTCCAAAACAGACACC CAGACTCATTGGATGTCTGAATCCGGTCAGATTGACCTGTTCGTCTTCCTCGGGCCGTCACCGAATGATATCAGT AAAACATATGGTGAACTCACAGGATATACACAATTGCCCCAGCAGTTCGCCATTGGATATCACCAATGCCGTTGG AACTATGTTACGGACGAGGATGTCAAGGAAGTCAACGCCAAATTTGACAAGTACCAGATTCCATACGATGTGATC TGGCTTGATCTTGAATATACCGATGACCGGAAATACTTCACCTGGGACCCTCTCACCTTCCCTGATCCTACGGGT ATGCAGCAAAAGCTCGATGAAAGTGAGCGAAAGCTTGTGGTTTTGATCGATCCTCACATCAAGAACGCGGACAAG TACTTCGTTTCAGAAGAGCTTAGAAGCAAAAACCTCGCTGTGCTGAACAAGGATGGCGAAATCTATGATGGATGG TGCTGGCCAGGTTCCTCGAACTGGGTCGACTGCTTTAACCCCGCTGCGCATGCCTGGTGGGCCACGCTACACAAG TTTGACAAATTCAAGGGATCGCTTCAGAATCTTTTCATCTGGAATGATATGAATGAACCCTCTGTTTTTAACGGG CCTGACATGACCATGCCCAAGGACAACTTGCATCATGGAAACTGGGAACATCGCGATGTTCACAACCTTAATGGT CTCACCCTTGTGAACGCCACCTACAAAGCAATGCTGGAGCGCAAAAAGGGGGAGATGCGCCGGCCATTCATCTTG ACGCGCTCGTACTACTCCGGGGCCCAGCGGGTGTCTGCTATGTGGACTGGAGACAACCAGGCCACCTGGGACCAC CTAGGGGCTTCTCTCCCCATGGTCCTGACCAACGGTATCACAGGCTTCCCCTTCGCTGGCGCAGATGTCGGAGGA TTCTTCCATAATCCTGATAAGGACCTTTTGACTCGATGGTACCAGACAGGTATATGGTATCCCTTCTTCCGCGCG CATGCTCACATCGATACCCGTCGCCGTGAGCCGTATCTGATCAGCGAGCCCCACCGGTCCTACATCGCTCAGGCA ATCCGTCTGAGGTACCAACTGATGCCTGCTTGGTATACCGCCTTCCACGAAGCCTCCGTTAACGGCACGCCAATC GTTCGCCCTCAGTATTACATGTTCCCAGAGGACGAGCAAGGCTTTGCCATCGATGATCAGCTGTACCTTGCTTCC ACGGGTCTTCTCGTCAAGCCTGTTGTGCAGGAGAACACGCATAGTGCAGAGGTATATATCTCCGACGACGAGAAG TACTATGACTACTTTGATTTCACCGTCTACCAGGGTGCGGGCAAGAAACACACCGTCCCTGCGCCAGAGGACAAG GTTCCTGTGTTGATCCAGGGTGGTCACATCATTCCCCGCAAGGACCGTCCTCGTCGCAGTACCGGTCTGATGCGA TGGGACCCGTACACACTAGTCATTACCCTAGACAAGAATGGCGAGGCGGAAGGCAGTCTGTACGTGGACGATGGC GAGACGTTCGACTACGAGCGTGGCGCCTACATTCACCGCCGCTTCAACTACCGCGACTCGGTGTTGTCGTCGAAG GACATTGGTACCAATGGACCTAAGACTGCTGAGTACCTCAAGACCATGGCTGGTGTGACAGTCGAGCGGGTGGTG ATCGTTGACCCTCCCGCTGAATGGAAGGCTAAGAACATCGTGAGTGTCATTGAAGATGGAGCCAAGTCAGGCTCT ACGGCCTCCTTGGAGTTCTACGAGCAGGAGGCCGGGAGGGCATCCTATGTTGTGGTGAAGAAGCCGAATGTTGGT ATTGGAAAGGCATGGCGGATTGAGTTCTGA |
| Gene | >Pro_DTO377G3_2|g6446.t1 ATGGCCAGGAGTCTACCTGCGCCCCGTTGGGCAATGTTGCTCTCCCTGGTTATCCTTCTCGTCTGCATTGTGGTC CCCGGTTGTAAGGTTACCTTTTGCCAAATCGCAAGATTACAGAAAGCTAACTCTTATGCTACGAACAGTTGCGGT CAAACACAAGGATTTCAAGACTTGCGATCAGTCCGGGTTCTGCAAACGAAATCGTGCCTACGCCGATGACGCCTC TTCTCAAGGCATTTCATGGAGCTCACCTTACGAGCTAGATCCCGCCACTATACATTTCAAGGATGGAATGCTTAC TGGAGTCATTTTGAAAACCACGACTGCCAATGAAAAGGTCCGGCTACCTCTCACGGTGTCTTTCTTGGAATCGGG AGCAGCCCGCATTGTGGTGGATGAAGAGAAGCGGATGAAGGGCGACATTGAAATGCGACATGGCAGTCAAGCAAA CAAGAAACGATATAATGAAGCCGAAAAATGGGCTATCGTGGGTGGTTTAGAAGTCAGCAAGTCGGCCACGTTGAA TGCCCAGAGCGAAACTGGATTCACGAACGTCTTGTACGGACCGGACGACAAATTCCAAGCGATCGTTCGCCATGC GCCATTTGGAGTCGAATTCCAGCGGGATGGACAGACCCATGTTCAATTGAACCACCAAGGCTTCCTGAACATGGA GCACTGGCGACCGAAGGTAGATGCCGAAGACGGCGAATCCGGCGAAGATGAGAGCACCTGGTGGGAGGAGACGTT TGGGGGAAATACCGACTCGAAGCCACGTGGTCCCGAGAGTATTGCTCTTGATATTACCTTCCCCGGTTATAGTCA TGTATTTGGTATCCCAGAGCACGCAGATTCGCTCTCGCTCAAGGAGACTAGGGGTGGATCTGGTAACCATGAGAA CCCTTATCGTCTATACAACTCCGATGTTTTCGAGTATGAACTCGAAAGCCCGATGACCTTGTACGGAGCCATCCC GCTGATGCAAGCCCACCGCAAGAGCTCCACTGTCGGGGTCTTCTGGCTCAATGCAGCGGAAACGTGGATCGATAT TGTCAAGTCCACTGCCTCCTCCAACCCCCTGGCCTTGGGCGCCCGCTCCAAAACAGACACCCAGACTCATTGGAT GTCTGAATCCGGTCAGATTGACCTGTTCGTCTTCCTCGGGCCGTCACCGAATGATATCAGTAAAACATATGGTGA ACTCACAGGATATACACAATTGCCCCAGCAGTTCGCCATTGGATATCACCAATGCCGTTGGAACTATGTTACGGA CGAGGATGTCAAGGAAGTCAACGCCAAATTTGACAAGTACCAGATTCCATACGATGTGATCTGGCTTGATCTTGA ATATACCGATGACCGGAAATACTTCACCTGGGACCCTCTCACCTTCCCTGATCCTACGGGTATGCAGCAAAAGCT CGATGAAAGTGAGCGAAAGCTTGTGGTTTTGATCGATCCTCACATCAAGAACGCGGACAAGTACTTCGTTTCAGA AGAGCTTAGAAGCAAAAACCTCGCTGTGCTGAACAAGGATGGCGAAATCTATGATGGATGGTGCTGGCCAGGTTC CTCGAACTGGGTCGACTGCTTTAACCCCGCTGCGCATGCCTGGTGGGCCACGCTACACAAGTTTGACAAATTCAA GGGATCGCTTCAGAATCTTTTCATCTGGAATGATATGAATGAACCCTCTGTTTTTAACGGGCCTGACATGACCAT GCCCAAGGACAACTTGCATCATGGAAACTGGGAACATCGCGATGTTCACAACCTTAATGGTCTCACCCTTGTGAA CGCCACCTACAAAGCAATGCTGGAGCGCAAAAAGGGGGAGATGCGCCGGCCATTCATCTTGACGCGCTCGTACTA CTCCGGGGCCCAGCGGGTGTCTGCTATGTGGACTGGAGACAACCAGGCCACCTGGGACCACCTAGGGGCTTCTCT CCCCATGGTCCTGACCAACGGTATCACAGGCTTCCCCTTCGCTGGCGCAGATGTCGGAGGATTCTTCCATAATCC TGATAAGGACCTTTTGACTCGATGGTACCAGACAGGTATATGGTATCCCTTCTTCCGCGCGCATGCTCACATCGA TACCCGTCGCCGTGAGCCGTATCTGATCAGCGAGCCCCACCGGTCCTACATCGCTCAGGCAATCCGTCTGAGGTA CCAACTGATGCCTGCTTGGTATACCGCCTTCCACGAAGCCTCCGTTAACGGCACGCCAATCGTTCGCCCTCAGTA TTACATGTTCCCAGAGGACGAGCAAGGCTTTGCCATCGATGATCAGCTGTACCTTGCTTCCACGGGTCTTCTCGT CAAGCCTGTTGTGCAGGAGAACACGCATAGTGCAGAGGTATATATCTCCGACGACGAGAAGTACTATGACTACTT TGATTTCACCGTCTACCAGGGTGCGGGCAAGAAACACACCGTCCCTGCGCCAGAGGACAAGGTTCCTGTGTTGAT CCAGGGTGGTCACATCATTCCCCGCAAGGACCGTCCTCGTCGCAGTACCGGTCTGATGCGATGGGACCCGTACAC ACTAGTCATTACCCTAGACAAGAATGGCGAGGCGGAAGGCAGTCTGTACGTGGACGATGGCGAGACGTTCGACTA CGAGCGTGGCGCCTACATTCACCGCCGCTTCAACTACCGCGACTCGGTGTTGTCGTCGAAGGACATTGGTACCAA TGGACCTAAGACTGCTGAGTACCTCAAGACCATGGCTGGTGTGACAGTCGAGCGGGTGGTGATCGTTGACCCTCC CGCTGAATGGAAGGCTAAGAACATCGTGAGTGTCATTGAAGATGGAGCCAAGTCAGGCTCTACGGCCTCCTTGGA GTTCTACGAGCAGGAGGCCGGGAGGGCATCCTATGTTGTGGTGAAGAAGCCGAATGTTGGTATTGGAAAGGCATG GCGGATTGAGTTCTGA |