© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6434.t1 |
| Gene name | |
| Location | scaffold_17:194084..195491 |
| Strand | - |
| Gene length (bp) | 1407 |
| Transcript length (bp) | 1407 |
| Coding sequence length (bp) | 1407 |
| Protein length (aa) | 469 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02833 | DHHA2 | DHHA2 domain | 1.9E-31 | 288 | 464 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016462 | pyrophosphatase activity | Yes |
| GO:0005737 | cytoplasm | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0003674 | molecular_function | No |
| GO:0016787 | hydrolase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 123.28 | 75.27 | 171.29 |
| 5d_25C | Five days - 25 degrees Celsius | 143.28 | 87.31 | 199.26 |
| 7d_25C | Seven days - 25 degrees Celsius | 122.50 | 73.85 | 171.14 |
| 10d_25C | Ten days - 25 degrees Celsius | 151.71 | 92.21 | 211.20 |
| 7d_15C | Seven days - 15 degrees Celsius | 194.48 | 113.33 | 275.63 |
| 7d_30C | Seven days - 30 degrees Celsius | 118.73 | 70.07 | 167.39 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.569007 | no |
| 3d_25C | 7d_25C | 0.986282 | no |
| 3d_25C | 7d_15C | 0.035668 | yes |
| 3d_25C | 7d_30C | 0.914614 | no |
| 3d_25C | 10d_25C | 0.399194 | no |
| 5d_25C | 7d_25C | 0.553728 | no |
| 5d_25C | 7d_15C | 0.182527 | no |
| 5d_25C | 7d_30C | 0.460358 | no |
| 5d_25C | 10d_25C | 0.857129 | no |
| 7d_25C | 7d_15C | 0.033480 | yes |
| 7d_25C | 7d_30C | 0.930319 | no |
| 7d_25C | 10d_25C | 0.383526 | no |
| 7d_15C | 7d_30C | 0.018034 | yes |
| 7d_15C | 10d_25C | 0.298096 | no |
| 7d_30C | 10d_25C | 0.301341 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6434.t1 MTLLQFLRQARQVHLHFLSGALTEPPIYVIGNPSADLDSIVSAIIYSYCANNRLPIQSPRPHIPLLNLSNFPAGT ELYRLRPEFSAALWSSTNFPPLKSEEQFENTLQSAGNFLPEYVMTVADFAQSLEDQHVWHQILADATLVDWNAFP RPSKTDKGSGFLTGLPGVSFRTVGCIDHHIDEHNMPSIDGLPEGQPMIIQPGPGSCASLITRELRQRKLWDTTPE MTQVAKLALSAVLIDTLNLTAEGKVTDVDREAVEFLRSQIEGESQAAASSEGDWELETFYKSILHAKLNSLDLLT MEEILNRDYKDWIETSQSSGETVKMGFCSAVKPIRWLVQKAGGPEKFLDAALSFAASAEKDLDVLVIMTAFTGTD DKFCRELFVIVTGGNEAAVKGVERFIEQSSHHLGLVEWSPLDGEDIPELTGDCLSTLNVDEDSLHWRQLWVQTNA AGSRKQVAPLLRAAVAKL* |
| Coding | >Pro_DTO377G3_2|g6434.t1 ATGACTCTCCTCCAGTTCTTACGCCAAGCCCGCCAAGTGCACCTTCACTTCCTCTCGGGTGCTCTAACCGAGCCT CCAATCTATGTAATCGGCAATCCCTCTGCCGACCTTGACTCTATCGTCTCGGCGATCATCTACTCTTACTGCGCG AACAACCGGCTTCCGATCCAAAGCCCACGACCCCATATCCCACTACTAAACCTGTCCAATTTCCCCGCTGGGACA GAGCTGTATCGACTAAGACCGGAATTCTCGGCTGCATTATGGTCATCAACCAATTTCCCCCCTCTGAAGAGTGAA GAGCAATTCGAGAACACCCTTCAGTCTGCGGGCAATTTTCTACCCGAGTATGTTATGACCGTCGCGGACTTCGCG CAGTCTCTCGAAGACCAGCATGTGTGGCACCAGATACTCGCCGATGCAACGCTGGTAGACTGGAACGCGTTCCCG CGGCCATCAAAGACCGATAAGGGCTCTGGGTTCCTAACTGGGTTGCCGGGTGTCTCCTTCCGGACTGTAGGATGT ATCGACCACCACATCGACGAGCACAACATGCCAAGCATTGACGGCTTACCAGAAGGGCAGCCGATGATTATCCAA CCGGGACCTGGGTCATGTGCATCGCTCATCACGCGAGAGTTGCGACAACGGAAACTCTGGGACACGACCCCGGAA ATGACACAGGTTGCGAAGCTTGCTCTTTCGGCGGTGCTGATTGATACTTTAAATCTCACCGCGGAAGGCAAAGTG ACCGATGTAGATCGTGAGGCGGTCGAATTCCTGCGATCTCAAATCGAGGGAGAATCACAAGCTGCAGCGAGTTCA GAAGGCGATTGGGAGCTGGAAACGTTCTACAAGAGCATTCTTCATGCAAAGCTGAATAGTCTCGATCTTCTTACG ATGGAGGAAATATTGAACCGCGATTATAAAGACTGGATTGAGACGTCACAGTCCTCGGGGGAGACTGTGAAAATG GGCTTCTGTTCTGCCGTCAAGCCCATACGATGGCTTGTTCAGAAGGCAGGTGGCCCGGAGAAGTTCCTTGATGCT GCGCTCTCGTTCGCGGCTTCTGCTGAGAAAGACTTGGATGTGCTTGTTATCATGACGGCGTTCACGGGCACTGAC GACAAGTTTTGTCGCGAGCTATTCGTCATCGTGACGGGTGGCAATGAAGCGGCTGTCAAGGGTGTGGAGAGGTTT ATTGAGCAATCCTCTCACCATCTTGGGCTTGTAGAATGGTCTCCGCTCGATGGGGAGGATATCCCTGAGCTGACA GGCGATTGTCTTTCTACATTGAACGTGGACGAGGATTCCCTCCACTGGAGGCAGCTGTGGGTGCAAACCAACGCG GCTGGGAGTAGGAAGCAAGTTGCTCCATTGCTGCGCGCGGCGGTAGCTAAATTATAA |
| Transcript | >Pro_DTO377G3_2|g6434.t1 ATGACTCTCCTCCAGTTCTTACGCCAAGCCCGCCAAGTGCACCTTCACTTCCTCTCGGGTGCTCTAACCGAGCCT CCAATCTATGTAATCGGCAATCCCTCTGCCGACCTTGACTCTATCGTCTCGGCGATCATCTACTCTTACTGCGCG AACAACCGGCTTCCGATCCAAAGCCCACGACCCCATATCCCACTACTAAACCTGTCCAATTTCCCCGCTGGGACA GAGCTGTATCGACTAAGACCGGAATTCTCGGCTGCATTATGGTCATCAACCAATTTCCCCCCTCTGAAGAGTGAA GAGCAATTCGAGAACACCCTTCAGTCTGCGGGCAATTTTCTACCCGAGTATGTTATGACCGTCGCGGACTTCGCG CAGTCTCTCGAAGACCAGCATGTGTGGCACCAGATACTCGCCGATGCAACGCTGGTAGACTGGAACGCGTTCCCG CGGCCATCAAAGACCGATAAGGGCTCTGGGTTCCTAACTGGGTTGCCGGGTGTCTCCTTCCGGACTGTAGGATGT ATCGACCACCACATCGACGAGCACAACATGCCAAGCATTGACGGCTTACCAGAAGGGCAGCCGATGATTATCCAA CCGGGACCTGGGTCATGTGCATCGCTCATCACGCGAGAGTTGCGACAACGGAAACTCTGGGACACGACCCCGGAA ATGACACAGGTTGCGAAGCTTGCTCTTTCGGCGGTGCTGATTGATACTTTAAATCTCACCGCGGAAGGCAAAGTG ACCGATGTAGATCGTGAGGCGGTCGAATTCCTGCGATCTCAAATCGAGGGAGAATCACAAGCTGCAGCGAGTTCA GAAGGCGATTGGGAGCTGGAAACGTTCTACAAGAGCATTCTTCATGCAAAGCTGAATAGTCTCGATCTTCTTACG ATGGAGGAAATATTGAACCGCGATTATAAAGACTGGATTGAGACGTCACAGTCCTCGGGGGAGACTGTGAAAATG GGCTTCTGTTCTGCCGTCAAGCCCATACGATGGCTTGTTCAGAAGGCAGGTGGCCCGGAGAAGTTCCTTGATGCT GCGCTCTCGTTCGCGGCTTCTGCTGAGAAAGACTTGGATGTGCTTGTTATCATGACGGCGTTCACGGGCACTGAC GACAAGTTTTGTCGCGAGCTATTCGTCATCGTGACGGGTGGCAATGAAGCGGCTGTCAAGGGTGTGGAGAGGTTT ATTGAGCAATCCTCTCACCATCTTGGGCTTGTAGAATGGTCTCCGCTCGATGGGGAGGATATCCCTGAGCTGACA GGCGATTGTCTTTCTACATTGAACGTGGACGAGGATTCCCTCCACTGGAGGCAGCTGTGGGTGCAAACCAACGCG GCTGGGAGTAGGAAGCAAGTTGCTCCATTGCTGCGCGCGGCGGTAGCTAAATTATAA |
| Gene | >Pro_DTO377G3_2|g6434.t1 ATGACTCTCCTCCAGTTCTTACGCCAAGCCCGCCAAGTGCACCTTCACTTCCTCTCGGGTGCTCTAACCGAGCCT CCAATCTATGTAATCGGCAATCCCTCTGCCGACCTTGACTCTATCGTCTCGGCGATCATCTACTCTTACTGCGCG AACAACCGGCTTCCGATCCAAAGCCCACGACCCCATATCCCACTACTAAACCTGTCCAATTTCCCCGCTGGGACA GAGCTGTATCGACTAAGACCGGAATTCTCGGCTGCATTATGGTCATCAACCAATTTCCCCCCTCTGAAGAGTGAA GAGCAATTCGAGAACACCCTTCAGTCTGCGGGCAATTTTCTACCCGAGTATGTTATGACCGTCGCGGACTTCGCG CAGTCTCTCGAAGACCAGCATGTGTGGCACCAGATACTCGCCGATGCAACGCTGGTAGACTGGAACGCGTTCCCG CGGCCATCAAAGACCGATAAGGGCTCTGGGTTCCTAACTGGGTTGCCGGGTGTCTCCTTCCGGACTGTAGGATGT ATCGACCACCACATCGACGAGCACAACATGCCAAGCATTGACGGCTTACCAGAAGGGCAGCCGATGATTATCCAA CCGGGACCTGGGTCATGTGCATCGCTCATCACGCGAGAGTTGCGACAACGGAAACTCTGGGACACGACCCCGGAA ATGACACAGGTTGCGAAGCTTGCTCTTTCGGCGGTGCTGATTGATACTTTAAATCTCACCGCGGAAGGCAAAGTG ACCGATGTAGATCGTGAGGCGGTCGAATTCCTGCGATCTCAAATCGAGGGAGAATCACAAGCTGCAGCGAGTTCA GAAGGCGATTGGGAGCTGGAAACGTTCTACAAGAGCATTCTTCATGCAAAGCTGAATAGTCTCGATCTTCTTACG ATGGAGGAAATATTGAACCGCGATTATAAAGACTGGATTGAGACGTCACAGTCCTCGGGGGAGACTGTGAAAATG GGCTTCTGTTCTGCCGTCAAGCCCATACGATGGCTTGTTCAGAAGGCAGGTGGCCCGGAGAAGTTCCTTGATGCT GCGCTCTCGTTCGCGGCTTCTGCTGAGAAAGACTTGGATGTGCTTGTTATCATGACGGCGTTCACGGGCACTGAC GACAAGTTTTGTCGCGAGCTATTCGTCATCGTGACGGGTGGCAATGAAGCGGCTGTCAAGGGTGTGGAGAGGTTT ATTGAGCAATCCTCTCACCATCTTGGGCTTGTAGAATGGTCTCCGCTCGATGGGGAGGATATCCCTGAGCTGACA GGCGATTGTCTTTCTACATTGAACGTGGACGAGGATTCCCTCCACTGGAGGCAGCTGTGGGTGCAAACCAACGCG GCTGGGAGTAGGAAGCAAGTTGCTCCATTGCTGCGCGCGGCGGTAGCTAAATTATAA |