© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6430.t1 |
| Gene name | |
| Location | scaffold_17:172034..173543 |
| Strand | + |
| Gene length (bp) | 1509 |
| Transcript length (bp) | 1458 |
| Coding sequence length (bp) | 1458 |
| Protein length (aa) | 486 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00743 | FMO-like | Flavin-binding monooxygenase-like | 2.0E-05 | 8 | 60 |
| PF00743 | FMO-like | Flavin-binding monooxygenase-like | 7.6E-22 | 91 | 262 |
| PF00743 | FMO-like | Flavin-binding monooxygenase-like | 6.0E-09 | 286 | 424 |
| PF13738 | Pyr_redox_3 | Pyridine nucleotide-disulphide oxidoreductase | 1.8E-10 | 85 | 282 |
| PF13454 | NAD_binding_9 | FAD-NAD(P)-binding | 1.1E-08 | 11 | 186 |
| PF13434 | Lys_Orn_oxgnase | L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase | 1.1E-06 | 112 | 256 |
| PF07992 | Pyr_redox_2 | Pyridine nucleotide-disulphide oxidoreductase | 1.9E-08 | 9 | 258 |
| PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 3.0E-05 | 12 | 48 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004499 | N,N-dimethylaniline monooxygenase activity | Yes |
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:0050661 | NADP binding | Yes |
| GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0004497 | monooxygenase activity | No |
| GO:0000166 | nucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| Gene cluster ID | Type of secondary metabolism gene |
|---|---|
| Cluster 17 | Decorating |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 19.46 | 9.73 | 29.18 |
| 5d_25C | Five days - 25 degrees Celsius | 9.97 | 4.15 | 15.78 |
| 7d_25C | Seven days - 25 degrees Celsius | 8.28 | 3.23 | 13.32 |
| 10d_25C | Ten days - 25 degrees Celsius | 5.27 | 1.69 | 8.84 |
| 7d_15C | Seven days - 15 degrees Celsius | 12.75 | 5.66 | 19.85 |
| 7d_30C | Seven days - 30 degrees Celsius | 10.60 | 4.48 | 16.71 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.018560 | yes |
| 3d_25C | 7d_25C | 0.003197 | yes |
| 3d_25C | 7d_15C | 0.170566 | no |
| 3d_25C | 7d_30C | 0.039348 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.655796 | no |
| 5d_25C | 7d_15C | 0.505542 | no |
| 5d_25C | 7d_30C | 0.901620 | no |
| 5d_25C | 10d_25C | 0.072166 | no |
| 7d_25C | 7d_15C | 0.201629 | no |
| 7d_25C | 7d_30C | 0.536971 | no |
| 7d_25C | 10d_25C | 0.236356 | no |
| 7d_15C | 7d_30C | 0.649114 | no |
| 7d_15C | 10d_25C | 0.009124 | yes |
| 7d_30C | 10d_25C | 0.045367 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 8476 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6430.t1 MSITNTIRRVAVIGAGPSGLAAVKYLLAEKYFDQIEVFEQRSSVGGVWNYSPSSSKEGRSTAVPHLTPHEPVEKP VWIDHNGGREATFVSPVYDRLETNIPKELMRYSDKAFPLESQLFPKHRTVKQYLEEYGEDVKGLIHFETQVLEVK LKDESLSTWSLTSKSLQTGIDTTHTYDAVVVASGHFTVPYIPDILGIQAWDASYPGAISHSKFYNSPEPFQGKKV VVVGSSASGLDIGSQINEVSQGKLLVSQRSESYLAASANDDKIICPEIVEFLPSTTYDRGIKFADGRIEEHVDAV VFCTGYFYSYPFLSSLNPPVVTHGWRTMNVYQQLFYIEHPTLVFPVLSQRVIPFPMAENHAAVFSRVWSARLTLP PKDEMKAWEASEIEAKGDGKDFHLLPFPMDADYLNFLYDWAEKANPRPGLSNNGQGKLGTRWGERERWMRAHFPE IRRAFVQRGDARSEIKDLAELGFDFEEWKRQQDDQ* |
| Coding | >Pro_DTO377G3_2|g6430.t1 ATGTCAATCACAAATACTATTCGGCGAGTGGCTGTCATCGGCGCGGGGCCCTCCGGCCTTGCTGCAGTCAAATAC CTGCTCGCCGAGAAATATTTCGATCAAATCGAAGTCTTCGAGCAAAGAAGCTCCGTAGGAGGAGTTTGGAACTAC AGTCCGAGCTCCTCTAAAGAAGGGAGATCAACAGCTGTCCCACATTTAACCCCCCATGAGCCAGTCGAGAAGCCA GTGTGGATCGATCACAATGGGGGGCGTGAGGCAACATTCGTGTCTCCAGTATACGATCGACTGGAAACCAACATC CCTAAGGAGTTAATGCGCTACTCGGATAAGGCCTTCCCATTGGAATCCCAGCTCTTCCCCAAGCATCGGACGGTG AAACAATACCTCGAAGAATATGGCGAAGACGTCAAAGGCCTCATTCACTTTGAGACACAAGTCTTAGAAGTGAAA CTCAAGGATGAAAGTCTGAGCACTTGGAGTCTAACATCAAAGAGTCTTCAAACTGGCATAGACACAACCCACACA TATGATGCTGTGGTGGTTGCAAGCGGTCATTTCACGGTCCCTTACATACCTGACATCCTAGGAATACAAGCCTGG GATGCATCATACCCAGGTGCTATCTCTCATTCCAAGTTTTACAACTCCCCAGAACCTTTCCAAGGAAAGAAAGTT GTGGTGGTTGGAAGTTCTGCTTCGGGCCTGGACATTGGTTCCCAGATCAATGAAGTAAGCCAAGGCAAGCTGTTG GTCTCCCAACGATCTGAATCATACTTGGCTGCATCCGCAAATGACGATAAAATCATCTGCCCGGAGATAGTCGAG TTTCTTCCTTCGACAACCTATGACAGAGGTATAAAATTTGCGGATGGTCGCATCGAGGAACATGTTGACGCTGTT GTCTTCTGCACCGGCTATTTCTATTCATATCCTTTCCTATCCTCACTCAACCCACCGGTTGTGACCCACGGATGG CGAACAATGAATGTCTACCAGCAGTTATTCTATATAGAGCACCCCACTCTCGTCTTCCCCGTGCTTTCGCAGCGG GTGATTCCATTCCCTATGGCTGAGAACCACGCTGCTGTCTTCTCTCGTGTATGGTCTGCGCGGCTTACGCTTCCA CCAAAAGATGAGATGAAGGCATGGGAAGCTTCCGAAATTGAAGCCAAAGGAGATGGAAAGGATTTCCATTTGCTT CCATTTCCCATGGATGCTGACTACCTCAATTTTCTCTACGACTGGGCGGAGAAGGCCAACCCACGACCTGGCCTC TCTAACAACGGACAAGGCAAACTTGGTACTCGGTGGGGTGAGCGGGAAAGATGGATGCGGGCCCATTTCCCAGAA ATCAGACGTGCTTTCGTACAACGGGGTGACGCACGGAGCGAGATCAAGGATCTAGCGGAGCTCGGTTTCGACTTT GAAGAGTGGAAGAGGCAACAAGATGATCAGTGA |
| Transcript | >Pro_DTO377G3_2|g6430.t1 ATGTCAATCACAAATACTATTCGGCGAGTGGCTGTCATCGGCGCGGGGCCCTCCGGCCTTGCTGCAGTCAAATAC CTGCTCGCCGAGAAATATTTCGATCAAATCGAAGTCTTCGAGCAAAGAAGCTCCGTAGGAGGAGTTTGGAACTAC AGTCCGAGCTCCTCTAAAGAAGGGAGATCAACAGCTGTCCCACATTTAACCCCCCATGAGCCAGTCGAGAAGCCA GTGTGGATCGATCACAATGGGGGGCGTGAGGCAACATTCGTGTCTCCAGTATACGATCGACTGGAAACCAACATC CCTAAGGAGTTAATGCGCTACTCGGATAAGGCCTTCCCATTGGAATCCCAGCTCTTCCCCAAGCATCGGACGGTG AAACAATACCTCGAAGAATATGGCGAAGACGTCAAAGGCCTCATTCACTTTGAGACACAAGTCTTAGAAGTGAAA CTCAAGGATGAAAGTCTGAGCACTTGGAGTCTAACATCAAAGAGTCTTCAAACTGGCATAGACACAACCCACACA TATGATGCTGTGGTGGTTGCAAGCGGTCATTTCACGGTCCCTTACATACCTGACATCCTAGGAATACAAGCCTGG GATGCATCATACCCAGGTGCTATCTCTCATTCCAAGTTTTACAACTCCCCAGAACCTTTCCAAGGAAAGAAAGTT GTGGTGGTTGGAAGTTCTGCTTCGGGCCTGGACATTGGTTCCCAGATCAATGAAGTAAGCCAAGGCAAGCTGTTG GTCTCCCAACGATCTGAATCATACTTGGCTGCATCCGCAAATGACGATAAAATCATCTGCCCGGAGATAGTCGAG TTTCTTCCTTCGACAACCTATGACAGAGGTATAAAATTTGCGGATGGTCGCATCGAGGAACATGTTGACGCTGTT GTCTTCTGCACCGGCTATTTCTATTCATATCCTTTCCTATCCTCACTCAACCCACCGGTTGTGACCCACGGATGG CGAACAATGAATGTCTACCAGCAGTTATTCTATATAGAGCACCCCACTCTCGTCTTCCCCGTGCTTTCGCAGCGG GTGATTCCATTCCCTATGGCTGAGAACCACGCTGCTGTCTTCTCTCGTGTATGGTCTGCGCGGCTTACGCTTCCA CCAAAAGATGAGATGAAGGCATGGGAAGCTTCCGAAATTGAAGCCAAAGGAGATGGAAAGGATTTCCATTTGCTT CCATTTCCCATGGATGCTGACTACCTCAATTTTCTCTACGACTGGGCGGAGAAGGCCAACCCACGACCTGGCCTC TCTAACAACGGACAAGGCAAACTTGGTACTCGGTGGGGTGAGCGGGAAAGATGGATGCGGGCCCATTTCCCAGAA ATCAGACGTGCTTTCGTACAACGGGGTGACGCACGGAGCGAGATCAAGGATCTAGCGGAGCTCGGTTTCGACTTT GAAGAGTGGAAGAGGCAACAAGATGATCAGTGA |
| Gene | >Pro_DTO377G3_2|g6430.t1 ATGTCAATCACAAATACTATTCGGCGAGTGGCTGTCATCGGCGCGGGGCCCTCCGGCCTTGCTGCAGTCAAGTAA GCGGGGTTGTTACACATCCGCCAACATGACAATGCTGACCGACTCAGATACCTGCTCGCCGAGAAATATTTCGAT CAAATCGAAGTCTTCGAGCAAAGAAGCTCCGTAGGAGGAGTTTGGAACTACAGTCCGAGCTCCTCTAAAGAAGGG AGATCAACAGCTGTCCCACATTTAACCCCCCATGAGCCAGTCGAGAAGCCAGTGTGGATCGATCACAATGGGGGG CGTGAGGCAACATTCGTGTCTCCAGTATACGATCGACTGGAAACCAACATCCCTAAGGAGTTAATGCGCTACTCG GATAAGGCCTTCCCATTGGAATCCCAGCTCTTCCCCAAGCATCGGACGGTGAAACAATACCTCGAAGAATATGGC GAAGACGTCAAAGGCCTCATTCACTTTGAGACACAAGTCTTAGAAGTGAAACTCAAGGATGAAAGTCTGAGCACT TGGAGTCTAACATCAAAGAGTCTTCAAACTGGCATAGACACAACCCACACATATGATGCTGTGGTGGTTGCAAGC GGTCATTTCACGGTCCCTTACATACCTGACATCCTAGGAATACAAGCCTGGGATGCATCATACCCAGGTGCTATC TCTCATTCCAAGTTTTACAACTCCCCAGAACCTTTCCAAGGAAAGAAAGTTGTGGTGGTTGGAAGTTCTGCTTCG GGCCTGGACATTGGTTCCCAGATCAATGAAGTAAGCCAAGGCAAGCTGTTGGTCTCCCAACGATCTGAATCATAC TTGGCTGCATCCGCAAATGACGATAAAATCATCTGCCCGGAGATAGTCGAGTTTCTTCCTTCGACAACCTATGAC AGAGGTATAAAATTTGCGGATGGTCGCATCGAGGAACATGTTGACGCTGTTGTCTTCTGCACCGGCTATTTCTAT TCATATCCTTTCCTATCCTCACTCAACCCACCGGTTGTGACCCACGGATGGCGAACAATGAATGTCTACCAGCAG TTATTCTATATAGAGCACCCCACTCTCGTCTTCCCCGTGCTTTCGCAGCGGGTGATTCCATTCCCTATGGCTGAG AACCACGCTGCTGTCTTCTCTCGTGTATGGTCTGCGCGGCTTACGCTTCCACCAAAAGATGAGATGAAGGCATGG GAAGCTTCCGAAATTGAAGCCAAAGGAGATGGAAAGGATTTCCATTTGCTTCCATTTCCCATGGATGCTGACTAC CTCAATTTTCTCTACGACTGGGCGGAGAAGGCCAACCCACGACCTGGCCTCTCTAACAACGGACAAGGCAAACTT GGTACTCGGTGGGGTGAGCGGGAAAGATGGATGCGGGCCCATTTCCCAGAAATCAGACGTGCTTTCGTACAACGG GGTGACGCACGGAGCGAGATCAAGGATCTAGCGGAGCTCGGTTTCGACTTTGAAGAGTGGAAGAGGCAACAAGAT GATCAGTGA |