© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6426.t1 |
| Gene name | |
| Location | scaffold_17:161255..162619 |
| Strand | + |
| Gene length (bp) | 1364 |
| Transcript length (bp) | 1248 |
| Coding sequence length (bp) | 1248 |
| Protein length (aa) | 416 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09296 | NUDIX-like | NADH pyrophosphatase-like rudimentary NUDIX domain | 8.2E-20 | 57 | 194 |
| PF00293 | NUDIX | NUDIX domain | 7.4E-17 | 257 | 365 |
| PF09297 | zf-NADH-PPase | NADH pyrophosphatase zinc ribbon domain | 7.8E-06 | 197 | 223 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0016787 | hydrolase activity | Yes |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6426.t1 MSTTALIPAPAHTLADSMLSRHFGKETVNYFSSSPINRLSFLRSDHPFLSSALKHPSTRFVLLNNLAPLTPSPSQ LYYAKYDDVRKLVPQDIFDKSEEDMIKNYDSRKTHPTLIFLGLDESHKEGGLTYKIYSGTPYFAVDVTPKGPEEQ QTAAKDIIAAMEAKGLSFFQTRVVMSFSADEAAIYAQARALMDWNTRNTFCGTCGHRTLAVNAGTKRACPPTDVA LGIEGKLEERPECNTRTTLSNLSFPRTDPTIIVAVVSADGKRVLLGRSKRFPPGWYSTLAGFIEPAESIEDAVRR EVWEESGVTLSRVVIHSSQPWPYPANLMIGAIAQVSDPAHETISLLHDPELEDARWFEIEEVQEALRIGTSDLSG PAGPEYKGGLRLPPPTAIANQLIQAAVSAEYFAADKQSKM* |
| Coding | >Pro_DTO377G3_2|g6426.t1 ATGAGCACGACTGCCCTGATCCCCGCCCCGGCTCATACGCTCGCGGATTCAATGTTGTCCCGACACTTTGGCAAA GAGACGGTTAATTACTTCTCCAGTTCTCCAATCAATCGTCTATCTTTCTTGCGCTCCGACCACCCGTTCCTGTCC AGTGCTCTAAAGCACCCTTCGACCCGATTTGTACTGTTGAACAACCTAGCGCCCTTGACTCCGTCACCGTCGCAG CTATACTATGCCAAGTATGACGATGTACGCAAGCTTGTTCCCCAGGATATCTTCGATAAATCCGAGGAAGACATG ATCAAGAACTATGACTCGCGCAAGACACACCCGACCCTTATATTCCTCGGACTGGACGAGAGTCACAAGGAAGGG GGTCTGACGTACAAGATCTACTCTGGCACGCCGTATTTTGCAGTCGACGTGACCCCCAAGGGACCTGAAGAGCAG CAGACTGCAGCGAAGGATATAATCGCTGCCATGGAGGCGAAGGGACTGTCATTCTTCCAAACACGAGTTGTCATG TCCTTCTCCGCAGATGAAGCTGCTATCTATGCACAAGCACGTGCGCTGATGGACTGGAACACTCGCAACACCTTC TGTGGTACATGCGGCCACCGTACTTTGGCCGTGAATGCAGGAACCAAGCGTGCCTGTCCACCGACGGATGTTGCA CTAGGAATTGAGGGCAAGTTGGAAGAGCGGCCGGAGTGCAATACCCGCACTACGCTGTCAAACCTTTCCTTCCCC CGTACCGATCCGACTATCATTGTTGCGGTGGTCTCCGCTGATGGCAAGCGGGTCCTCCTCGGGCGCTCCAAGCGC TTCCCGCCAGGGTGGTATTCCACCTTGGCTGGATTCATCGAGCCAGCGGAGTCAATCGAGGATGCCGTGCGGAGA GAGGTGTGGGAAGAATCCGGCGTCACTTTGTCCCGCGTTGTTATCCACTCCTCGCAGCCTTGGCCGTATCCGGCC AATTTGATGATTGGTGCTATTGCCCAGGTCAGTGACCCCGCTCACGAGACCATCTCTTTACTGCATGACCCTGAG TTGGAGGATGCGCGGTGGTTTGAAATTGAGGAGGTGCAAGAGGCGCTGCGCATTGGTACAAGTGACTTGAGTGGT CCGGCTGGTCCAGAATACAAGGGCGGTTTGCGATTGCCCCCTCCTACGGCTATTGCCAATCAGTTGATTCAGGCT GCTGTCAGCGCAGAGTATTTTGCGGCAGATAAGCAGTCTAAGATGTAA |
| Transcript | >Pro_DTO377G3_2|g6426.t1 ATGAGCACGACTGCCCTGATCCCCGCCCCGGCTCATACGCTCGCGGATTCAATGTTGTCCCGACACTTTGGCAAA GAGACGGTTAATTACTTCTCCAGTTCTCCAATCAATCGTCTATCTTTCTTGCGCTCCGACCACCCGTTCCTGTCC AGTGCTCTAAAGCACCCTTCGACCCGATTTGTACTGTTGAACAACCTAGCGCCCTTGACTCCGTCACCGTCGCAG CTATACTATGCCAAGTATGACGATGTACGCAAGCTTGTTCCCCAGGATATCTTCGATAAATCCGAGGAAGACATG ATCAAGAACTATGACTCGCGCAAGACACACCCGACCCTTATATTCCTCGGACTGGACGAGAGTCACAAGGAAGGG GGTCTGACGTACAAGATCTACTCTGGCACGCCGTATTTTGCAGTCGACGTGACCCCCAAGGGACCTGAAGAGCAG CAGACTGCAGCGAAGGATATAATCGCTGCCATGGAGGCGAAGGGACTGTCATTCTTCCAAACACGAGTTGTCATG TCCTTCTCCGCAGATGAAGCTGCTATCTATGCACAAGCACGTGCGCTGATGGACTGGAACACTCGCAACACCTTC TGTGGTACATGCGGCCACCGTACTTTGGCCGTGAATGCAGGAACCAAGCGTGCCTGTCCACCGACGGATGTTGCA CTAGGAATTGAGGGCAAGTTGGAAGAGCGGCCGGAGTGCAATACCCGCACTACGCTGTCAAACCTTTCCTTCCCC CGTACCGATCCGACTATCATTGTTGCGGTGGTCTCCGCTGATGGCAAGCGGGTCCTCCTCGGGCGCTCCAAGCGC TTCCCGCCAGGGTGGTATTCCACCTTGGCTGGATTCATCGAGCCAGCGGAGTCAATCGAGGATGCCGTGCGGAGA GAGGTGTGGGAAGAATCCGGCGTCACTTTGTCCCGCGTTGTTATCCACTCCTCGCAGCCTTGGCCGTATCCGGCC AATTTGATGATTGGTGCTATTGCCCAGGTCAGTGACCCCGCTCACGAGACCATCTCTTTACTGCATGACCCTGAG TTGGAGGATGCGCGGTGGTTTGAAATTGAGGAGGTGCAAGAGGCGCTGCGCATTGGTACAAGTGACTTGAGTGGT CCGGCTGGTCCAGAATACAAGGGCGGTTTGCGATTGCCCCCTCCTACGGCTATTGCCAATCAGTTGATTCAGGCT GCTGTCAGCGCAGAGTATTTTGCGGCAGATAAGCAGTCTAAGATGTAA |
| Gene | >Pro_DTO377G3_2|g6426.t1 ATGAGCACGACTGCCCTGATCCCCGCCCCGGCTCATACGCTCGCGGATTCAATGTTGTCCCGACACTTTGGCAAA GAGACGGTTAATTACTTCTCCAGTAAGGATGTCTTGGACTCTTGTATATGAGGCACAGTAGGGCTAAAGTATCTC TAGGTTCTCCAATCAATCGTCTATCTTTCTTGCGCTCCGACCACCCGTTCCTGTCCAGTGCTCTAAAGCACCCTT CGACCCGATTTGTACTGTTGAACAACCTAGCGCCCTTGACTCCGTCACCGTCGCAGCTATACTATGCCAAGTATG ACGATGTACGCAAGCTTGTTCCCCAGGATATCTTCGATAAATCCGAGGAAGACATGATCAAGAACTATGACTCGC GCAAGACACACCCGACCCTTATATTCCTCGGACTGGACGAGAGTCACAAGGAAGGGGGTCTGACGTACAAGATCT ACTCTGGCACGCCGTATTTTGCAGTCGACGTGACCCCCAAGGGACCTGAAGAGCAGCAGACTGCAGCGAAGGATA TAATCGCTGCCATGGAGGCGAAGGGACTGTCATTCTTCCAAACACGAGTTGTCATGTCCTTCTCCGCAGATGAAG GTATGAAGATGCGATCTTAATGTCTGCATCTATAAGAGGAAACTAATCAACTCGGGATAGCTGCTATCTATGCAC AAGCACGTGCGCTGATGGACTGGAACACTCGCAACACCTTCTGTGGTACATGCGGCCACCGTACTTTGGCCGTGA ATGCAGGAACCAAGCGTGCCTGTCCACCGACGGATGTTGCACTAGGAATTGAGGGCAAGTTGGAAGAGCGGCCGG AGTGCAATACCCGCACTACGCTGTCAAACCTTTCCTTCCCCCGTACCGATCCGACTATCATTGTTGCGGTGGTCT CCGCTGATGGCAAGCGGGTCCTCCTCGGGCGCTCCAAGCGCTTCCCGCCAGGGTGGTATTCCACCTTGGCTGGAT TCATCGAGCCAGCGGAGTCAATCGAGGATGCCGTGCGGAGAGAGGTGTGGGAAGAATCCGGCGTCACTTTGTCCC GCGTTGTTATCCACTCCTCGCAGCCTTGGCCGTATCCGGCCAATTTGATGATTGGTGCTATTGCCCAGGTCAGTG ACCCCGCTCACGAGACCATCTCTTTACTGCATGACCCTGAGTTGGAGGATGCGCGGTGGTTTGAAATTGAGGAGG TGCAAGAGGCGCTGCGCATTGGTACAAGTGACTTGAGTGGTCCGGCTGGTCCAGAATACAAGGGCGGTTTGCGAT TGCCCCCTCCTACGGCTATTGCCAATCAGTTGATTCAGGCTGCTGTCAGCGCAGAGTATTTTGCGGCAGATAAGC AGTCTAAGATGTAA |