Protein ID | Pro_DTO377G3_2|g6422.t1 |
Gene name | |
Location | scaffold_17:151070..153638 |
Strand | + |
Gene length (bp) | 2568 |
Transcript length (bp) | 2460 |
Coding sequence length (bp) | 2460 |
Protein length (aa) | 820 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF16203 | ERCC3_RAD25_C | ERCC3/RAD25/XPB C-terminal helicase | 8.5E-127 | 510 | 749 |
PF13625 | Helicase_C_3 | Helicase conserved C-terminal domain | 8.5E-37 | 89 | 212 |
PF04851 | ResIII | Type III restriction enzyme, res subunit | 1.0E-15 | 329 | 484 |
PF00271 | Helicase_C | Helicase conserved C-terminal domain | 4.5E-13 | 559 | 660 |
PF00176 | SNF2-rel_dom | SNF2-related domain | 5.6E-11 | 346 | 493 |
GO Term | Description | Terminal node |
---|---|---|
GO:0140658 | ATP-dependent chromatin remodeler activity | Yes |
GO:0016787 | hydrolase activity | Yes |
GO:0005524 | ATP binding | Yes |
GO:0003677 | DNA binding | Yes |
GO:0000166 | nucleotide binding | No |
GO:0032553 | ribonucleotide binding | No |
GO:0035639 | purine ribonucleoside triphosphate binding | No |
GO:0032559 | adenyl ribonucleotide binding | No |
GO:0043167 | ion binding | No |
GO:0008094 | ATP-dependent activity, acting on DNA | No |
GO:0017076 | purine nucleotide binding | No |
GO:0097367 | carbohydrate derivative binding | No |
GO:0140657 | ATP-dependent activity | No |
GO:0030554 | adenyl nucleotide binding | No |
GO:0003676 | nucleic acid binding | No |
GO:0003824 | catalytic activity | No |
GO:0005488 | binding | No |
GO:0036094 | small molecule binding | No |
GO:0003674 | molecular_function | No |
GO:0097159 | organic cyclic compound binding | No |
GO:0032555 | purine ribonucleotide binding | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0043168 | anion binding | No |
GO:0140097 | catalytic activity, acting on DNA | No |
GO:0140640 | catalytic activity, acting on a nucleic acid | No |
GO:1901265 | nucleoside phosphate binding | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 11 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g6422.t1 MPPKRKAADTGRSSGASKRATPVPDISSDDDYSDQEELPDETNLKAVVNKFSLEAFSKKNHAEKTDPRFGYKDLS SLPLKRDHYNRPLWIEPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHLHEYRLTGHSLYAAVSVGLKPQDIV EFLDRLSKTPLPESIRTFIIEFTKSYGKIKMVLRHNRYYVETTDPEMLQRLLKDEVIGPQRMDNTEGIIERAAPK MGGLVIPGTKDAAGVRETTQQEAAAAVARDGTEEGGAVNYGIDDIGEDDTEEATTYSFEIPAAGVEVVKARCQSI GCPALEEYDFQGDTVNPNLDMDLKPAARIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGITAAATIKKGTI VLCTSSMSVVQWRNEFLRWTTIDPGDIAIFTSDHKEKFKRSTGIIVSTYSMVSQTRARSYDAQKMMDWLQSREWG MMILDEVHVVPASMFRKVTSAIAAQSKLGLTATLLREDDKIKDLNFLIGPKLYEANWMELAAQGHIAKVQCAEVW CPMTTEFYSEYLRESSRKQALLYIMNPRKFQACQFLIDFHEKRGDKIIVFSDNVYALERYALKLNKAYIYGGTPQ NERMRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKRRNDEGFNAFFYSL VSKDTNEMVYSAKRQAFLIDQGYAFKVITHLQGIDSYEGLSYSTPAERRELLQEVMLQNESSADVEQVNDDLFSM RSGKRVTSKKGGAKRSAATLSGLAGGDDMAYIEYNKSRNKQLKDKGHHPLFKKMERDRQRRKKERENEE* |
Coding | >Pro_DTO377G3_2|g6422.t1 ATGCCTCCCAAACGCAAAGCAGCCGACACTGGTCGGTCTAGCGGTGCTTCAAAGCGGGCTACGCCGGTCCCCGAT ATTTCCAGCGACGATGACTACTCGGACCAGGAAGAGTTGCCAGATGAAACCAACTTGAAAGCGGTCGTCAACAAG TTCTCTCTCGAGGCGTTCAGCAAGAAGAATCATGCGGAGAAGACGGACCCCCGATTTGGATACAAGGATCTTTCT TCGCTCCCGCTGAAGCGCGACCACTACAACCGGCCGTTATGGATCGAGCCTTTGAAAGGCACAATCACACTCGAG AGTTTCTCCCCGCTGGCACCCCAGGCGCAAGATTTCCTGACCACCATTGCGGAACCGCTTTCCCGTCCGACCCAT CTCCACGAATATCGGTTGACCGGACACAGTTTGTATGCCGCGGTCTCGGTCGGTCTCAAACCGCAGGATATTGTT GAGTTCTTGGACCGCCTGTCGAAAACACCGCTGCCCGAAAGCATTCGGACGTTCATCATCGAGTTCACAAAGTCC TACGGAAAGATCAAGATGGTGTTGAGGCATAATCGATACTATGTGGAAACGACAGATCCTGAAATGCTTCAGCGG TTGCTGAAAGATGAAGTGATCGGTCCCCAGAGAATGGATAATACCGAAGGAATTATCGAACGGGCTGCTCCGAAA ATGGGTGGTCTTGTCATTCCTGGAACGAAAGATGCAGCTGGTGTACGAGAGACCACTCAACAGGAGGCTGCCGCT GCCGTAGCTAGAGATGGGACAGAAGAAGGAGGGGCCGTGAACTATGGCATTGACGACATTGGTGAAGATGATACA GAAGAAGCAACCACATACAGTTTCGAAATCCCCGCTGCTGGTGTCGAAGTGGTCAAGGCCCGCTGCCAATCGATC GGATGTCCTGCCCTGGAAGAGTACGATTTCCAAGGAGACACAGTCAACCCTAATCTGGATATGGATTTGAAACCC GCGGCGCGGATTCGGTCTTACCAGGAGAAGAGTTTAAGTAAAATGTTCGGTAACGGACGAGCCAAGAGTGGTATC ATTGTGCTTCCTTGTGGTGCCGGTAAAACCCTTGTGGGTATCACTGCGGCGGCGACCATCAAGAAAGGCACTATC GTCCTCTGCACTAGTTCCATGTCTGTGGTTCAGTGGCGAAACGAGTTCTTGCGGTGGACAACCATCGACCCTGGT GATATTGCCATTTTCACGTCGGACCATAAAGAAAAATTCAAGCGATCAACTGGTATTATTGTGTCCACATACTCA ATGGTGTCACAGACTCGTGCCCGGTCCTATGATGCCCAGAAGATGATGGACTGGCTTCAATCGAGAGAATGGGGT ATGATGATTCTTGATGAGGTGCACGTCGTGCCGGCATCGATGTTCCGAAAGGTCACATCTGCAATTGCCGCACAG AGTAAGCTTGGTCTCACTGCAACACTACTACGTGAGGATGACAAGATCAAGGATTTGAATTTCTTGATCGGACCG AAGCTCTACGAAGCAAACTGGATGGAACTGGCTGCACAGGGCCACATCGCCAAGGTCCAATGTGCCGAGGTGTGG TGCCCGATGACAACTGAGTTCTATTCTGAGTATCTGCGGGAAAGCTCAAGGAAACAGGCTCTACTATACATCATG AACCCTCGCAAGTTCCAAGCGTGTCAGTTCCTGATCGATTTCCACGAGAAGCGCGGCGATAAGATCATCGTATTC TCTGACAATGTCTACGCTCTCGAGCGATATGCACTCAAGCTGAACAAGGCTTATATCTATGGCGGAACTCCTCAA AATGAGCGCATGCGTATTCTAGAGAACTTCCAACACAATGAGCAGGTCAACACCATCTTCTTGTCGAAGATTGGT GATACCTCCCTCGATCTACCCGAGGCCACTTGTCTGATCCAAATTTCGTCTCATTACGGTTCGCGTCGTCAGGAG GCACAGCGCCTGGGACGAATTCTGCGAGCCAAGCGCCGAAACGACGAGGGCTTCAATGCGTTCTTCTACTCGCTC GTGTCCAAGGACACTAATGAGATGGTCTATTCGGCCAAACGCCAGGCATTCCTAATCGATCAGGGTTATGCTTTC AAGGTCATCACCCATCTCCAAGGCATAGACAGCTATGAAGGACTCTCGTACTCGACGCCAGCGGAACGCCGCGAG CTCCTGCAAGAAGTCATGCTGCAGAACGAGTCATCCGCCGACGTCGAACAGGTCAATGATGATCTGTTCTCGATG CGCTCCGGCAAGCGAGTGACATCTAAGAAAGGCGGTGCTAAACGCAGCGCTGCCACTCTTAGTGGTCTGGCTGGT GGTGATGATATGGCCTATATCGAGTATAACAAGAGCAGGAACAAGCAGCTCAAGGATAAGGGACATCACCCGCTG TTCAAGAAGATGGAACGAGACCGACAACGCCGCAAGAAGGAGAGGGAGAACGAAGAATAA |
Transcript | >Pro_DTO377G3_2|g6422.t1 ATGCCTCCCAAACGCAAAGCAGCCGACACTGGTCGGTCTAGCGGTGCTTCAAAGCGGGCTACGCCGGTCCCCGAT ATTTCCAGCGACGATGACTACTCGGACCAGGAAGAGTTGCCAGATGAAACCAACTTGAAAGCGGTCGTCAACAAG TTCTCTCTCGAGGCGTTCAGCAAGAAGAATCATGCGGAGAAGACGGACCCCCGATTTGGATACAAGGATCTTTCT TCGCTCCCGCTGAAGCGCGACCACTACAACCGGCCGTTATGGATCGAGCCTTTGAAAGGCACAATCACACTCGAG AGTTTCTCCCCGCTGGCACCCCAGGCGCAAGATTTCCTGACCACCATTGCGGAACCGCTTTCCCGTCCGACCCAT CTCCACGAATATCGGTTGACCGGACACAGTTTGTATGCCGCGGTCTCGGTCGGTCTCAAACCGCAGGATATTGTT GAGTTCTTGGACCGCCTGTCGAAAACACCGCTGCCCGAAAGCATTCGGACGTTCATCATCGAGTTCACAAAGTCC TACGGAAAGATCAAGATGGTGTTGAGGCATAATCGATACTATGTGGAAACGACAGATCCTGAAATGCTTCAGCGG TTGCTGAAAGATGAAGTGATCGGTCCCCAGAGAATGGATAATACCGAAGGAATTATCGAACGGGCTGCTCCGAAA ATGGGTGGTCTTGTCATTCCTGGAACGAAAGATGCAGCTGGTGTACGAGAGACCACTCAACAGGAGGCTGCCGCT GCCGTAGCTAGAGATGGGACAGAAGAAGGAGGGGCCGTGAACTATGGCATTGACGACATTGGTGAAGATGATACA GAAGAAGCAACCACATACAGTTTCGAAATCCCCGCTGCTGGTGTCGAAGTGGTCAAGGCCCGCTGCCAATCGATC GGATGTCCTGCCCTGGAAGAGTACGATTTCCAAGGAGACACAGTCAACCCTAATCTGGATATGGATTTGAAACCC GCGGCGCGGATTCGGTCTTACCAGGAGAAGAGTTTAAGTAAAATGTTCGGTAACGGACGAGCCAAGAGTGGTATC ATTGTGCTTCCTTGTGGTGCCGGTAAAACCCTTGTGGGTATCACTGCGGCGGCGACCATCAAGAAAGGCACTATC GTCCTCTGCACTAGTTCCATGTCTGTGGTTCAGTGGCGAAACGAGTTCTTGCGGTGGACAACCATCGACCCTGGT GATATTGCCATTTTCACGTCGGACCATAAAGAAAAATTCAAGCGATCAACTGGTATTATTGTGTCCACATACTCA ATGGTGTCACAGACTCGTGCCCGGTCCTATGATGCCCAGAAGATGATGGACTGGCTTCAATCGAGAGAATGGGGT ATGATGATTCTTGATGAGGTGCACGTCGTGCCGGCATCGATGTTCCGAAAGGTCACATCTGCAATTGCCGCACAG AGTAAGCTTGGTCTCACTGCAACACTACTACGTGAGGATGACAAGATCAAGGATTTGAATTTCTTGATCGGACCG AAGCTCTACGAAGCAAACTGGATGGAACTGGCTGCACAGGGCCACATCGCCAAGGTCCAATGTGCCGAGGTGTGG TGCCCGATGACAACTGAGTTCTATTCTGAGTATCTGCGGGAAAGCTCAAGGAAACAGGCTCTACTATACATCATG AACCCTCGCAAGTTCCAAGCGTGTCAGTTCCTGATCGATTTCCACGAGAAGCGCGGCGATAAGATCATCGTATTC TCTGACAATGTCTACGCTCTCGAGCGATATGCACTCAAGCTGAACAAGGCTTATATCTATGGCGGAACTCCTCAA AATGAGCGCATGCGTATTCTAGAGAACTTCCAACACAATGAGCAGGTCAACACCATCTTCTTGTCGAAGATTGGT GATACCTCCCTCGATCTACCCGAGGCCACTTGTCTGATCCAAATTTCGTCTCATTACGGTTCGCGTCGTCAGGAG GCACAGCGCCTGGGACGAATTCTGCGAGCCAAGCGCCGAAACGACGAGGGCTTCAATGCGTTCTTCTACTCGCTC GTGTCCAAGGACACTAATGAGATGGTCTATTCGGCCAAACGCCAGGCATTCCTAATCGATCAGGGTTATGCTTTC AAGGTCATCACCCATCTCCAAGGCATAGACAGCTATGAAGGACTCTCGTACTCGACGCCAGCGGAACGCCGCGAG CTCCTGCAAGAAGTCATGCTGCAGAACGAGTCATCCGCCGACGTCGAACAGGTCAATGATGATCTGTTCTCGATG CGCTCCGGCAAGCGAGTGACATCTAAGAAAGGCGGTGCTAAACGCAGCGCTGCCACTCTTAGTGGTCTGGCTGGT GGTGATGATATGGCCTATATCGAGTATAACAAGAGCAGGAACAAGCAGCTCAAGGATAAGGGACATCACCCGCTG TTCAAGAAGATGGAACGAGACCGACAACGCCGCAAGAAGGAGAGGGAGAACGAAGAATAA |
Gene | >Pro_DTO377G3_2|g6422.t1 ATGCCTCCCAAACGCAAAGCAGCCGACAGTAAGTCCTGGTACACATTTCCGAAGTATTGATGGCTGATTATATCC AGCTGGTCGGTCTAGCGGTGCTTCAAAGCGGGCTACGCCGGTCCCCGATATTTCCAGCGACGATGACTACTCGGA CCAGGAAGAGTTGCCAGATGAAACCAACTTGAAAGGTACAGTGTGGCAGTCTGCTCACCTGAAGTGAACCAGAGA CTAAAATTTGACCATAAAGCGGTCGTCAACAAGTTCTCTCTCGAGGCGTTCAGCAAGAAGAATCATGCGGAGAAG ACGGACCCCCGATTTGGATACAAGGATCTTTCTTCGCTCCCGCTGAAGCGCGACCACTACAACCGGCCGTTATGG ATCGAGCCTTTGAAAGGCACAATCACACTCGAGAGTTTCTCCCCGCTGGCACCCCAGGCGCAAGATTTCCTGACC ACCATTGCGGAACCGCTTTCCCGTCCGACCCATCTCCACGAATATCGGTTGACCGGACACAGTTTGTATGCCGCG GTCTCGGTCGGTCTCAAACCGCAGGATATTGTTGAGTTCTTGGACCGCCTGTCGAAAACACCGCTGCCCGAAAGC ATTCGGACGTTCATCATCGAGTTCACAAAGTCCTACGGAAAGATCAAGATGGTGTTGAGGCATAATCGATACTAT GTGGAAACGACAGATCCTGAAATGCTTCAGCGGTTGCTGAAAGATGAAGTGATCGGTCCCCAGAGAATGGATAAT ACCGAAGGAATTATCGAACGGGCTGCTCCGAAAATGGGTGGTCTTGTCATTCCTGGAACGAAAGATGCAGCTGGT GTACGAGAGACCACTCAACAGGAGGCTGCCGCTGCCGTAGCTAGAGATGGGACAGAAGAAGGAGGGGCCGTGAAC TATGGCATTGACGACATTGGTGAAGATGATACAGAAGAAGCAACCACATACAGTTTCGAAATCCCCGCTGCTGGT GTCGAAGTGGTCAAGGCCCGCTGCCAATCGATCGGATGTCCTGCCCTGGAAGAGTACGATTTCCAAGGAGACACA GTCAACCCTAATCTGGATATGGATTTGAAACCCGCGGCGCGGATTCGGTCTTACCAGGAGAAGAGTTTAAGTAAA ATGTTCGGTAACGGACGAGCCAAGAGTGGTATCATTGTGCTTCCTTGTGGTGCCGGTAAAACCCTTGTGGGTATC ACTGCGGCGGCGACCATCAAGAAAGGCACTATCGTCCTCTGCACTAGTTCCATGTCTGTGGTTCAGTGGCGAAAC GAGTTCTTGCGGTGGACAACCATCGACCCTGGTGATATTGCCATTTTCACGTCGGACCATAAAGAAAAATTCAAG CGATCAACTGGTATTATTGTGTCCACATACTCAATGGTGTCACAGACTCGTGCCCGGTCCTATGATGCCCAGAAG ATGATGGACTGGCTTCAATCGAGAGAATGGGGTATGATGATTCTTGATGAGGTGCACGTCGTGCCGGCATCGATG TTCCGAAAGGTCACATCTGCAATTGCCGCACAGAGTAAGCTTGGTCTCACTGCAACACTACTACGTGAGGATGAC AAGATCAAGGATTTGAATTTCTTGATCGGACCGAAGCTCTACGAAGCAAACTGGATGGAACTGGCTGCACAGGGC CACATCGCCAAGGTCCAATGTGCCGAGGTGTGGTGCCCGATGACAACTGAGTTCTATTCTGAGTATCTGCGGGAA AGCTCAAGGAAACAGGCTCTACTATACATCATGAACCCTCGCAAGTTCCAAGCGTGTCAGTTCCTGATCGATTTC CACGAGAAGCGCGGCGATAAGATCATCGTATTCTCTGACAATGTCTACGCTCTCGAGCGATATGCACTCAAGCTG AACAAGGCTTATATCTATGGCGGAACTCCTCAAAATGAGCGCATGCGTATTCTAGAGAACTTCCAACACAATGAG CAGGTCAACACCATCTTCTTGTCGAAGATTGGTGATACCTCCCTCGATCTACCCGAGGCCACTTGTCTGATCCAA ATTTCGTCTCATTACGGTTCGCGTCGTCAGGAGGCACAGCGCCTGGGACGAATTCTGCGAGCCAAGCGCCGAAAC GACGAGGGCTTCAATGCGTTCTTCTACTCGCTCGTGTCCAAGGACACTAATGAGATGGTCTATTCGGCCAAACGC CAGGCATTCCTAATCGATCAGGGTTATGCTTTCAAGGTCATCACCCATCTCCAAGGCATAGACAGCTATGAAGGA CTCTCGTACTCGACGCCAGCGGAACGCCGCGAGCTCCTGCAAGAAGTCATGCTGCAGAACGAGTCATCCGCCGAC GTCGAACAGGTCAATGATGATCTGTTCTCGATGCGCTCCGGCAAGCGAGTGACATCTAAGAAAGGCGGTGCTAAA CGCAGCGCTGCCACTCTTAGTGGTCTGGCTGGTGGTGATGATATGGCCTATATCGAGTATAACAAGAGCAGGAAC AAGCAGCTCAAGGATAAGGGACATCACCCGCTGTTCAAGAAGATGGAACGAGACCGACAACGCCGCAAGAAGGAG AGGGAGAACGAAGAATAA |