© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6402.t1 |
| Gene name | |
| Location | scaffold_17:98483..100127 |
| Strand | + |
| Gene length (bp) | 1644 |
| Transcript length (bp) | 1332 |
| Coding sequence length (bp) | 1332 |
| Protein length (aa) | 444 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12265 | CAF1C_H4-bd | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 3.3E-28 | 34 | 104 |
| PF00400 | WD40 | WD domain, G-beta repeat | 6.1E-03 | 189 | 225 |
| PF00400 | WD40 | WD domain, G-beta repeat | 1.5E-03 | 292 | 322 |
| PF00400 | WD40 | WD domain, G-beta repeat | 3.7E-06 | 328 | 366 |
| PF00400 | WD40 | WD domain, G-beta repeat | 1.3E-01 | 390 | 423 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 82.97 | 50.61 | 115.34 |
| 5d_25C | Five days - 25 degrees Celsius | 71.30 | 43.23 | 99.37 |
| 7d_25C | Seven days - 25 degrees Celsius | 67.06 | 40.47 | 93.64 |
| 10d_25C | Ten days - 25 degrees Celsius | 63.06 | 37.81 | 88.31 |
| 7d_15C | Seven days - 15 degrees Celsius | 66.63 | 40.04 | 93.22 |
| 7d_30C | Seven days - 30 degrees Celsius | 67.16 | 40.56 | 93.75 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.576817 | no |
| 3d_25C | 7d_25C | 0.390463 | no |
| 3d_25C | 7d_15C | 0.378709 | no |
| 3d_25C | 7d_30C | 0.392233 | no |
| 3d_25C | 10d_25C | 0.250409 | no |
| 5d_25C | 7d_25C | 0.846169 | no |
| 5d_25C | 7d_15C | 0.829733 | no |
| 5d_25C | 7d_30C | 0.850150 | no |
| 5d_25C | 10d_25C | 0.667627 | no |
| 7d_25C | 7d_15C | 0.987161 | no |
| 7d_25C | 7d_30C | 0.996303 | no |
| 7d_25C | 10d_25C | 0.851044 | no |
| 7d_15C | 7d_30C | 0.983897 | no |
| 7d_15C | 10d_25C | 0.869193 | no |
| 7d_30C | 10d_25C | 0.843445 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6402.t1 MDPYEDDAGAGDEHEKDQDQDQDHEHNDEKAINEEYKTWKKNAPFLYDMILSTALEWPTLTTQWLPDKQEVPDKP YSTHRLIIGTHTTGEAQNYLQIAQVQLPNPNAPNPEDYDEEKGEIGGYGGGSKKAQMEIKFNIVQKIDHKGEVNK ARYQPQNPNIIATMCTDGRVMIWDRSKHPSLPTGTVNPQMELLGHEAEGFGLSWNPHVAGHLATGSEDKTVRLWD ITTYTKGNKAVRPSRTFTHHSSIVNDVQYHPLHSSLIGTVSDDITLQILDTRQEDSTRAAASAEGQHRDAINSIS FNPASETILATGSADKTIGIWDLRNLKSKLHSLEGHTDSVQSISWHPFEESVLASSSYDRKIMFWDLSRAGEEQT PEDAQDGPPELLFMHGGHTNRISDFSWNLSDPWVLCSAAEDNLLQVWKVADAIVGKDLEDVPTEEIEA* |
| Coding | >Pro_DTO377G3_2|g6402.t1 ATGGATCCCTATGAAGACGATGCTGGTGCTGGTGACGAGCACGAGAAAGACCAGGATCAGGACCAGGACCATGAA CACAATGATGAGAAGGCGATCAATGAAGAGTACAAAACATGGAAGAAGAATGCGCCCTTCCTCTATGATATGATC CTGAGCACAGCATTAGAATGGCCAACTCTTACAACCCAGTGGCTTCCAGATAAGCAAGAAGTCCCGGACAAGCCC TACTCAACCCACCGTCTCATCATTGGCACACATACCACTGGTGAAGCGCAGAATTACCTTCAGATCGCTCAAGTG CAACTCCCAAATCCTAATGCGCCAAACCCCGAAGACTATGATGAAGAAAAGGGAGAGATTGGAGGTTATGGTGGG GGCTCAAAGAAGGCACAGATGGAGATCAAGTTCAATATTGTGCAAAAGATCGATCACAAGGGCGAGGTCAACAAG GCCCGGTATCAGCCACAGAACCCAAACATCATTGCGACAATGTGCACGGATGGTCGGGTGATGATCTGGGATCGT TCTAAGCACCCTAGCTTGCCAACTGGCACAGTGAACCCTCAAATGGAGCTCCTAGGCCATGAAGCTGAAGGCTTC GGGCTTAGCTGGAACCCTCATGTAGCCGGTCACCTCGCGACAGGCAGTGAGGATAAGACTGTTCGACTTTGGGAT ATTACTACATACACCAAGGGCAACAAGGCAGTTCGGCCCAGCCGGACTTTCACACACCACTCCTCGATCGTCAAC GACGTTCAATACCATCCTCTCCACTCCTCTCTCATCGGAACCGTCTCCGATGATATCACGCTTCAAATCCTCGAT ACCCGCCAAGAAGACTCCACTCGCGCGGCTGCTTCCGCGGAAGGCCAGCACCGCGATGCCATCAACTCCATTTCC TTCAACCCGGCTTCCGAGACGATTCTGGCCACGGGTTCCGCCGACAAGACTATCGGTATTTGGGATCTCCGTAAC CTGAAATCAAAGCTCCACTCGCTTGAAGGCCACACCGATTCGGTGCAATCTATCTCGTGGCATCCATTTGAGGAG TCGGTCCTGGCAAGTTCCAGTTATGACCGCAAGATTATGTTCTGGGACCTCAGCCGGGCAGGTGAGGAGCAAACA CCCGAGGATGCTCAAGATGGGCCGCCAGAGCTTTTGTTTATGCACGGTGGACACACGAATCGAATTTCAGACTTC AGCTGGAACCTAAGTGACCCTTGGGTTCTCTGTTCCGCTGCCGAGGACAATCTACTACAGGTATGGAAGGTAGCA GATGCAATTGTGGGCAAAGACCTGGAGGATGTCCCAACAGAAGAAATTGAGGCGTAG |
| Transcript | >Pro_DTO377G3_2|g6402.t1 ATGGATCCCTATGAAGACGATGCTGGTGCTGGTGACGAGCACGAGAAAGACCAGGATCAGGACCAGGACCATGAA CACAATGATGAGAAGGCGATCAATGAAGAGTACAAAACATGGAAGAAGAATGCGCCCTTCCTCTATGATATGATC CTGAGCACAGCATTAGAATGGCCAACTCTTACAACCCAGTGGCTTCCAGATAAGCAAGAAGTCCCGGACAAGCCC TACTCAACCCACCGTCTCATCATTGGCACACATACCACTGGTGAAGCGCAGAATTACCTTCAGATCGCTCAAGTG CAACTCCCAAATCCTAATGCGCCAAACCCCGAAGACTATGATGAAGAAAAGGGAGAGATTGGAGGTTATGGTGGG GGCTCAAAGAAGGCACAGATGGAGATCAAGTTCAATATTGTGCAAAAGATCGATCACAAGGGCGAGGTCAACAAG GCCCGGTATCAGCCACAGAACCCAAACATCATTGCGACAATGTGCACGGATGGTCGGGTGATGATCTGGGATCGT TCTAAGCACCCTAGCTTGCCAACTGGCACAGTGAACCCTCAAATGGAGCTCCTAGGCCATGAAGCTGAAGGCTTC GGGCTTAGCTGGAACCCTCATGTAGCCGGTCACCTCGCGACAGGCAGTGAGGATAAGACTGTTCGACTTTGGGAT ATTACTACATACACCAAGGGCAACAAGGCAGTTCGGCCCAGCCGGACTTTCACACACCACTCCTCGATCGTCAAC GACGTTCAATACCATCCTCTCCACTCCTCTCTCATCGGAACCGTCTCCGATGATATCACGCTTCAAATCCTCGAT ACCCGCCAAGAAGACTCCACTCGCGCGGCTGCTTCCGCGGAAGGCCAGCACCGCGATGCCATCAACTCCATTTCC TTCAACCCGGCTTCCGAGACGATTCTGGCCACGGGTTCCGCCGACAAGACTATCGGTATTTGGGATCTCCGTAAC CTGAAATCAAAGCTCCACTCGCTTGAAGGCCACACCGATTCGGTGCAATCTATCTCGTGGCATCCATTTGAGGAG TCGGTCCTGGCAAGTTCCAGTTATGACCGCAAGATTATGTTCTGGGACCTCAGCCGGGCAGGTGAGGAGCAAACA CCCGAGGATGCTCAAGATGGGCCGCCAGAGCTTTTGTTTATGCACGGTGGACACACGAATCGAATTTCAGACTTC AGCTGGAACCTAAGTGACCCTTGGGTTCTCTGTTCCGCTGCCGAGGACAATCTACTACAGGTATGGAAGGTAGCA GATGCAATTGTGGGCAAAGACCTGGAGGATGTCCCAACAGAAGAAATTGAGGCGTAG |
| Gene | >Pro_DTO377G3_2|g6402.t1 ATGGATCCCTATGAAGACGATGCTGGTGAGCATCCATGACCTTGCGCACTACTCAAAAATCTCATTCTAATGAAG ACCTAGGTGCTGGTGACGAGCACGAGAAAGACCAGGATCAGGACCAGGACCATGAACACAATGATGAGAAGGCGA TCAATGAAGGTAGCTTTGCTCAATCTCTCCAGTTCTGCCAACCACGGTATCTAATTATATTCATTGGTCACAGAG TACAAAACATGGAAGAAGAATGCGCCCTTCCTCTATGATATGATCCTGAGCACAGCATTAGAATGGCCAACTCTT ACAACCCAGTGGCTTCCAGATAAGCAAGAGTATGCCCCGAAACCCTACTAGTCCCACTGGTCCAATCATCAACCT AACCACGGCTATCTTCAGAGTCCCGGACAAGCCCTACTCAACCCACCGTCTCATCATTGGCACACATACCACTGG TGAAGCGCAGAATTACCTTCAGATCGCTCAAGTGCAACTCCCAAATCCTAATGCGCCAAACCCCGAAGACTATGA TGAAGAAAAGGGAGAGATTGGAGGTTATGGTGGGGGCTCAAAGAAGGCACAGATGGAGATCAAGTTCAATATTGT GCAAAAGATCGATCACAAGGGCGAGGTCAACAAGGCCCGGTATCAGCCACAGAACCCAAACATCATTGCGACAAT GTGCACGGATGGTCGGGTGATGATCTGGGATCGTTCTAAGCACCCTAGCTTGCCAACTGGCACAGTGAACCCTCA AATGGAGCTCCTAGGCCATGAAGCTGAAGGCTTCGGGCTTAGCTGGAACCCTCATGTAGCCGGTCACCTCGCGAC AGGCAGTGAGGATAAGACTGTTCGACTTTGGTAGGGCACAGCATGAAAACCCAAGAATTTGGTGTGACTCGCAGC TAATGAAGGTCACCACAGGGATATTACTACATACACCAAGGGCAACAAGGCAGTTCGGCCCAGCCGGACTTTCAC ACACCACTCCTCGATCGTCAACGACGTTCAATACCATCCTCTCCACTCCTCTCTCATCGGAACCGTCTCCGATGA TATCACGCTTCAAATCCTCGATACCCGCCAAGAAGACTCCACTCGCGCGGCTGCTTCCGCGGAAGGCCAGCACCG CGATGCCATCAACTCCATTTCCTTCAACCCGGCTTCCGAGACGATTCTGGCCACGGGTTCCGCCGACAAGACTAT CGGTATTTGGGATCTCCGTAACCTGAAATCAAAGCTCCACTCGCTTGAAGGCCACACCGATTCGGTGCAATCTAT CTCGTGGCATCCATTTGAGGAGTCGGTCCTGGCAAGTTCCAGTTATGACCGCAAGATTATGTTCTGGGACCTCAG CCGGGCAGGTGAGGAGCAAACACCCGAGGATGCTCAAGATGGGCCGCCAGAGCTGTAAGTGACCACGATTTGTTT TCTTCATGCAATGGTTTGTATTGTTCGCTAACCTTGCTCCTTAGTTTGTTTATGCACGGTGGACACACGAATCGA ATTTCAGACTTCAGCTGGAACCTAAGTGACCCTTGGGTTCTCTGTTCCGCTGCCGAGGACAATCTACTACAGGTA TGGAAGGTAGCAGATGCAATTGTGGGCAAAGACCTGGAGGATGTCCCAACAGAAGAAATTGAGGCGTAG |