Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g6402.t1
Gene name
Locationscaffold_17:98483..100127
Strand+
Gene length (bp)1644
Transcript length (bp)1332
Coding sequence length (bp)1332
Protein length (aa) 444

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12265 CAF1C_H4-bd Histone-binding protein RBBP4 or subunit C of CAF1 complex 3.3E-28 34 104
PF00400 WD40 WD domain, G-beta repeat 6.1E-03 189 225
PF00400 WD40 WD domain, G-beta repeat 1.5E-03 292 322
PF00400 WD40 WD domain, G-beta repeat 3.7E-06 328 366
PF00400 WD40 WD domain, G-beta repeat 1.3E-01 390 423

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 42 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g6402.t1
MDPYEDDAGAGDEHEKDQDQDQDHEHNDEKAINEEYKTWKKNAPFLYDMILSTALEWPTLTTQWLPDKQEVPDKP
YSTHRLIIGTHTTGEAQNYLQIAQVQLPNPNAPNPEDYDEEKGEIGGYGGGSKKAQMEIKFNIVQKIDHKGEVNK
ARYQPQNPNIIATMCTDGRVMIWDRSKHPSLPTGTVNPQMELLGHEAEGFGLSWNPHVAGHLATGSEDKTVRLWD
ITTYTKGNKAVRPSRTFTHHSSIVNDVQYHPLHSSLIGTVSDDITLQILDTRQEDSTRAAASAEGQHRDAINSIS
FNPASETILATGSADKTIGIWDLRNLKSKLHSLEGHTDSVQSISWHPFEESVLASSSYDRKIMFWDLSRAGEEQT
PEDAQDGPPELLFMHGGHTNRISDFSWNLSDPWVLCSAAEDNLLQVWKVADAIVGKDLEDVPTEEIEA*
Coding >Pro_DTO377G3_2|g6402.t1
ATGGATCCCTATGAAGACGATGCTGGTGCTGGTGACGAGCACGAGAAAGACCAGGATCAGGACCAGGACCATGAA
CACAATGATGAGAAGGCGATCAATGAAGAGTACAAAACATGGAAGAAGAATGCGCCCTTCCTCTATGATATGATC
CTGAGCACAGCATTAGAATGGCCAACTCTTACAACCCAGTGGCTTCCAGATAAGCAAGAAGTCCCGGACAAGCCC
TACTCAACCCACCGTCTCATCATTGGCACACATACCACTGGTGAAGCGCAGAATTACCTTCAGATCGCTCAAGTG
CAACTCCCAAATCCTAATGCGCCAAACCCCGAAGACTATGATGAAGAAAAGGGAGAGATTGGAGGTTATGGTGGG
GGCTCAAAGAAGGCACAGATGGAGATCAAGTTCAATATTGTGCAAAAGATCGATCACAAGGGCGAGGTCAACAAG
GCCCGGTATCAGCCACAGAACCCAAACATCATTGCGACAATGTGCACGGATGGTCGGGTGATGATCTGGGATCGT
TCTAAGCACCCTAGCTTGCCAACTGGCACAGTGAACCCTCAAATGGAGCTCCTAGGCCATGAAGCTGAAGGCTTC
GGGCTTAGCTGGAACCCTCATGTAGCCGGTCACCTCGCGACAGGCAGTGAGGATAAGACTGTTCGACTTTGGGAT
ATTACTACATACACCAAGGGCAACAAGGCAGTTCGGCCCAGCCGGACTTTCACACACCACTCCTCGATCGTCAAC
GACGTTCAATACCATCCTCTCCACTCCTCTCTCATCGGAACCGTCTCCGATGATATCACGCTTCAAATCCTCGAT
ACCCGCCAAGAAGACTCCACTCGCGCGGCTGCTTCCGCGGAAGGCCAGCACCGCGATGCCATCAACTCCATTTCC
TTCAACCCGGCTTCCGAGACGATTCTGGCCACGGGTTCCGCCGACAAGACTATCGGTATTTGGGATCTCCGTAAC
CTGAAATCAAAGCTCCACTCGCTTGAAGGCCACACCGATTCGGTGCAATCTATCTCGTGGCATCCATTTGAGGAG
TCGGTCCTGGCAAGTTCCAGTTATGACCGCAAGATTATGTTCTGGGACCTCAGCCGGGCAGGTGAGGAGCAAACA
CCCGAGGATGCTCAAGATGGGCCGCCAGAGCTTTTGTTTATGCACGGTGGACACACGAATCGAATTTCAGACTTC
AGCTGGAACCTAAGTGACCCTTGGGTTCTCTGTTCCGCTGCCGAGGACAATCTACTACAGGTATGGAAGGTAGCA
GATGCAATTGTGGGCAAAGACCTGGAGGATGTCCCAACAGAAGAAATTGAGGCGTAG
Transcript >Pro_DTO377G3_2|g6402.t1
ATGGATCCCTATGAAGACGATGCTGGTGCTGGTGACGAGCACGAGAAAGACCAGGATCAGGACCAGGACCATGAA
CACAATGATGAGAAGGCGATCAATGAAGAGTACAAAACATGGAAGAAGAATGCGCCCTTCCTCTATGATATGATC
CTGAGCACAGCATTAGAATGGCCAACTCTTACAACCCAGTGGCTTCCAGATAAGCAAGAAGTCCCGGACAAGCCC
TACTCAACCCACCGTCTCATCATTGGCACACATACCACTGGTGAAGCGCAGAATTACCTTCAGATCGCTCAAGTG
CAACTCCCAAATCCTAATGCGCCAAACCCCGAAGACTATGATGAAGAAAAGGGAGAGATTGGAGGTTATGGTGGG
GGCTCAAAGAAGGCACAGATGGAGATCAAGTTCAATATTGTGCAAAAGATCGATCACAAGGGCGAGGTCAACAAG
GCCCGGTATCAGCCACAGAACCCAAACATCATTGCGACAATGTGCACGGATGGTCGGGTGATGATCTGGGATCGT
TCTAAGCACCCTAGCTTGCCAACTGGCACAGTGAACCCTCAAATGGAGCTCCTAGGCCATGAAGCTGAAGGCTTC
GGGCTTAGCTGGAACCCTCATGTAGCCGGTCACCTCGCGACAGGCAGTGAGGATAAGACTGTTCGACTTTGGGAT
ATTACTACATACACCAAGGGCAACAAGGCAGTTCGGCCCAGCCGGACTTTCACACACCACTCCTCGATCGTCAAC
GACGTTCAATACCATCCTCTCCACTCCTCTCTCATCGGAACCGTCTCCGATGATATCACGCTTCAAATCCTCGAT
ACCCGCCAAGAAGACTCCACTCGCGCGGCTGCTTCCGCGGAAGGCCAGCACCGCGATGCCATCAACTCCATTTCC
TTCAACCCGGCTTCCGAGACGATTCTGGCCACGGGTTCCGCCGACAAGACTATCGGTATTTGGGATCTCCGTAAC
CTGAAATCAAAGCTCCACTCGCTTGAAGGCCACACCGATTCGGTGCAATCTATCTCGTGGCATCCATTTGAGGAG
TCGGTCCTGGCAAGTTCCAGTTATGACCGCAAGATTATGTTCTGGGACCTCAGCCGGGCAGGTGAGGAGCAAACA
CCCGAGGATGCTCAAGATGGGCCGCCAGAGCTTTTGTTTATGCACGGTGGACACACGAATCGAATTTCAGACTTC
AGCTGGAACCTAAGTGACCCTTGGGTTCTCTGTTCCGCTGCCGAGGACAATCTACTACAGGTATGGAAGGTAGCA
GATGCAATTGTGGGCAAAGACCTGGAGGATGTCCCAACAGAAGAAATTGAGGCGTAG
Gene >Pro_DTO377G3_2|g6402.t1
ATGGATCCCTATGAAGACGATGCTGGTGAGCATCCATGACCTTGCGCACTACTCAAAAATCTCATTCTAATGAAG
ACCTAGGTGCTGGTGACGAGCACGAGAAAGACCAGGATCAGGACCAGGACCATGAACACAATGATGAGAAGGCGA
TCAATGAAGGTAGCTTTGCTCAATCTCTCCAGTTCTGCCAACCACGGTATCTAATTATATTCATTGGTCACAGAG
TACAAAACATGGAAGAAGAATGCGCCCTTCCTCTATGATATGATCCTGAGCACAGCATTAGAATGGCCAACTCTT
ACAACCCAGTGGCTTCCAGATAAGCAAGAGTATGCCCCGAAACCCTACTAGTCCCACTGGTCCAATCATCAACCT
AACCACGGCTATCTTCAGAGTCCCGGACAAGCCCTACTCAACCCACCGTCTCATCATTGGCACACATACCACTGG
TGAAGCGCAGAATTACCTTCAGATCGCTCAAGTGCAACTCCCAAATCCTAATGCGCCAAACCCCGAAGACTATGA
TGAAGAAAAGGGAGAGATTGGAGGTTATGGTGGGGGCTCAAAGAAGGCACAGATGGAGATCAAGTTCAATATTGT
GCAAAAGATCGATCACAAGGGCGAGGTCAACAAGGCCCGGTATCAGCCACAGAACCCAAACATCATTGCGACAAT
GTGCACGGATGGTCGGGTGATGATCTGGGATCGTTCTAAGCACCCTAGCTTGCCAACTGGCACAGTGAACCCTCA
AATGGAGCTCCTAGGCCATGAAGCTGAAGGCTTCGGGCTTAGCTGGAACCCTCATGTAGCCGGTCACCTCGCGAC
AGGCAGTGAGGATAAGACTGTTCGACTTTGGTAGGGCACAGCATGAAAACCCAAGAATTTGGTGTGACTCGCAGC
TAATGAAGGTCACCACAGGGATATTACTACATACACCAAGGGCAACAAGGCAGTTCGGCCCAGCCGGACTTTCAC
ACACCACTCCTCGATCGTCAACGACGTTCAATACCATCCTCTCCACTCCTCTCTCATCGGAACCGTCTCCGATGA
TATCACGCTTCAAATCCTCGATACCCGCCAAGAAGACTCCACTCGCGCGGCTGCTTCCGCGGAAGGCCAGCACCG
CGATGCCATCAACTCCATTTCCTTCAACCCGGCTTCCGAGACGATTCTGGCCACGGGTTCCGCCGACAAGACTAT
CGGTATTTGGGATCTCCGTAACCTGAAATCAAAGCTCCACTCGCTTGAAGGCCACACCGATTCGGTGCAATCTAT
CTCGTGGCATCCATTTGAGGAGTCGGTCCTGGCAAGTTCCAGTTATGACCGCAAGATTATGTTCTGGGACCTCAG
CCGGGCAGGTGAGGAGCAAACACCCGAGGATGCTCAAGATGGGCCGCCAGAGCTGTAAGTGACCACGATTTGTTT
TCTTCATGCAATGGTTTGTATTGTTCGCTAACCTTGCTCCTTAGTTTGTTTATGCACGGTGGACACACGAATCGA
ATTTCAGACTTCAGCTGGAACCTAAGTGACCCTTGGGTTCTCTGTTCCGCTGCCGAGGACAATCTACTACAGGTA
TGGAAGGTAGCAGATGCAATTGTGGGCAAAGACCTGGAGGATGTCCCAACAGAAGAAATTGAGGCGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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