© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g6400.t1 |
| Gene name | |
| Location | scaffold_17:91518..93439 |
| Strand | + |
| Gene length (bp) | 1921 |
| Transcript length (bp) | 1587 |
| Coding sequence length (bp) | 1587 |
| Protein length (aa) | 529 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00067 | p450 | Cytochrome P450 | 8.2E-30 | 216 | 503 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | Yes |
| GO:0004497 | monooxygenase activity | Yes |
| GO:0020037 | heme binding | Yes |
| GO:0005506 | iron ion binding | Yes |
| GO:0046914 | transition metal ion binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0046906 | tetrapyrrole binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 29 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.58 | 0.62 | 4.53 |
| 5d_25C | Five days - 25 degrees Celsius | 1.53 | 0.18 | 2.88 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.93 | 0.37 | 3.49 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.38 | 0.19 | 2.58 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.40 | 0.15 | 2.65 |
| 7d_30C | Seven days - 30 degrees Celsius | 4.41 | 1.38 | 7.44 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.294292 | no |
| 3d_25C | 7d_25C | 0.583699 | no |
| 3d_25C | 7d_15C | 0.181721 | no |
| 3d_25C | 7d_30C | 0.190760 | no |
| 3d_25C | 10d_25C | 0.189892 | no |
| 5d_25C | 7d_25C | 0.709620 | no |
| 5d_25C | 7d_15C | 0.903314 | no |
| 5d_25C | 7d_30C | 0.019886 | yes |
| 5d_25C | 10d_25C | 0.892818 | no |
| 7d_25C | 7d_15C | 0.564057 | no |
| 7d_25C | 7d_30C | 0.043601 | yes |
| 7d_25C | 10d_25C | 0.555048 | no |
| 7d_15C | 7d_30C | 0.007437 | yes |
| 7d_15C | 10d_25C | 0.992129 | no |
| 7d_30C | 10d_25C | 0.008133 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6400.t1 MAGLPFWPLIGVLAVVLYLLRRPPPSSLRHIPTVKYNAYLPDFINRLMYYPKAASMISEGYEKYKDSPFRLLTGD GEVIVLPVKYQDELRHLPPSRLSSLHAQYENALGQYTNIIIDTLLPSMTVRKKLTPSLGRVVPGIIDELRTAFET ALPGCEDTWIQINPNEMFTRLIALATSRMMAGDALRENEEWLNVASNYAVNVGITILLLRPVPKYLRPIVARFLP SVRKMRKQLRFAKDLFIPMIHERRLAQQAKDPNYTKPDDFLQWMMDLSEEKKEDLKPDTLAHHMLLLVTLAVTHT STMALCHCIFDLVTRPEYIEPLREEITRTLPDGWYRTTQAALKEQSRLDSFLRESQRFAPPGELNFHRIVKEPIT LHDGLVLPVETHVCFAAGPISKDAAFVKDPITFDGFRWCHYPRDRFVLTPELGKLDAMLNGAGEMQAEKSASSAY FVSITNTNMHFGFGLQACPGRFFASNTLKAILSRLILDYEFKFVEDLQGKRPSNLVVGEHILPSMTTEMLFRKRP IGL* |
| Coding | >Pro_DTO377G3_2|g6400.t1 ATGGCCGGCCTACCCTTCTGGCCCCTCATTGGGGTGTTGGCTGTAGTGCTCTATCTCCTTCGACGACCACCACCT TCCAGTTTGAGACATATCCCAACGGTCAAGTACAATGCCTATCTACCAGATTTCATCAATCGACTCATGTACTAC CCCAAAGCTGCCTCGATGATCAGTGAAGGATATGAAAAGTACAAGGATAGTCCATTTCGCCTGCTCACTGGCGAT GGAGAAGTCATCGTCCTGCCCGTGAAATACCAGGATGAACTGAGACATCTTCCTCCTTCGAGACTCAGTTCTCTA CATGCCCAATATGAAAACGCGTTGGGCCAGTACACCAACATCATCATCGACACCCTTCTACCTTCTATGACCGTG CGGAAAAAGTTGACGCCCAGTCTTGGTCGCGTTGTTCCCGGGATCATCGACGAGCTGCGAACAGCATTCGAAACT GCTCTCCCAGGATGCGAAGATACCTGGATTCAAATTAACCCAAACGAGATGTTCACCCGACTAATCGCCCTCGCG ACATCCCGCATGATGGCCGGCGACGCCCTCCGCGAAAACGAAGAATGGCTCAACGTCGCAAGCAACTACGCCGTG AACGTGGGAATCACCATTCTCCTGCTCCGCCCTGTCCCCAAATACCTCCGTCCCATCGTAGCGCGCTTCCTCCCC AGTGTCCGTAAGATGAGGAAGCAGTTGCGCTTCGCGAAAGACCTCTTCATTCCGATGATCCACGAGCGCAGACTG GCACAACAGGCTAAAGACCCCAATTATACCAAGCCGGATGACTTCTTGCAGTGGATGATGGATCTGAGCGAGGAA AAGAAGGAGGACCTCAAACCGGATACCCTGGCGCATCACATGCTGCTCTTGGTCACACTGGCTGTTACTCACACC AGCACGATGGCCTTGTGCCACTGTATCTTCGATTTGGTTACCAGACCTGAATACATTGAGCCACTGCGGGAAGAA ATCACACGGACTCTGCCTGATGGCTGGTATCGGACGACTCAGGCTGCGCTTAAGGAGCAGTCCCGTCTGGACAGC TTCTTGCGCGAATCTCAACGCTTCGCTCCGCCTGGTGAATTGAACTTCCACCGCATCGTCAAAGAACCAATCACG CTCCATGATGGCCTCGTTCTTCCAGTAGAGACACACGTCTGTTTCGCTGCCGGTCCGATTAGCAAAGACGCTGCC TTCGTCAAAGACCCAATCACCTTCGACGGCTTTCGCTGGTGCCATTACCCTCGGGATCGCTTTGTCCTGACCCCT GAGCTCGGAAAACTCGACGCTATGCTGAACGGTGCTGGTGAGATGCAGGCTGAAAAGTCCGCATCTTCCGCCTAT TTCGTTTCGATCACTAACACCAACATGCATTTCGGCTTCGGGCTCCAGGCATGTCCCGGTCGGTTCTTCGCATCG AATACTTTGAAGGCAATCCTGAGTCGCCTCATTCTTGACTATGAATTCAAATTCGTTGAAGACCTGCAGGGGAAG AGACCCAGTAATCTTGTGGTTGGGGAGCATATTCTTCCGAGTATGACTACGGAGATGCTGTTCCGGAAAAGACCT ATTGGGCTTTGA |
| Transcript | >Pro_DTO377G3_2|g6400.t1 ATGGCCGGCCTACCCTTCTGGCCCCTCATTGGGGTGTTGGCTGTAGTGCTCTATCTCCTTCGACGACCACCACCT TCCAGTTTGAGACATATCCCAACGGTCAAGTACAATGCCTATCTACCAGATTTCATCAATCGACTCATGTACTAC CCCAAAGCTGCCTCGATGATCAGTGAAGGATATGAAAAGTACAAGGATAGTCCATTTCGCCTGCTCACTGGCGAT GGAGAAGTCATCGTCCTGCCCGTGAAATACCAGGATGAACTGAGACATCTTCCTCCTTCGAGACTCAGTTCTCTA CATGCCCAATATGAAAACGCGTTGGGCCAGTACACCAACATCATCATCGACACCCTTCTACCTTCTATGACCGTG CGGAAAAAGTTGACGCCCAGTCTTGGTCGCGTTGTTCCCGGGATCATCGACGAGCTGCGAACAGCATTCGAAACT GCTCTCCCAGGATGCGAAGATACCTGGATTCAAATTAACCCAAACGAGATGTTCACCCGACTAATCGCCCTCGCG ACATCCCGCATGATGGCCGGCGACGCCCTCCGCGAAAACGAAGAATGGCTCAACGTCGCAAGCAACTACGCCGTG AACGTGGGAATCACCATTCTCCTGCTCCGCCCTGTCCCCAAATACCTCCGTCCCATCGTAGCGCGCTTCCTCCCC AGTGTCCGTAAGATGAGGAAGCAGTTGCGCTTCGCGAAAGACCTCTTCATTCCGATGATCCACGAGCGCAGACTG GCACAACAGGCTAAAGACCCCAATTATACCAAGCCGGATGACTTCTTGCAGTGGATGATGGATCTGAGCGAGGAA AAGAAGGAGGACCTCAAACCGGATACCCTGGCGCATCACATGCTGCTCTTGGTCACACTGGCTGTTACTCACACC AGCACGATGGCCTTGTGCCACTGTATCTTCGATTTGGTTACCAGACCTGAATACATTGAGCCACTGCGGGAAGAA ATCACACGGACTCTGCCTGATGGCTGGTATCGGACGACTCAGGCTGCGCTTAAGGAGCAGTCCCGTCTGGACAGC TTCTTGCGCGAATCTCAACGCTTCGCTCCGCCTGGTGAATTGAACTTCCACCGCATCGTCAAAGAACCAATCACG CTCCATGATGGCCTCGTTCTTCCAGTAGAGACACACGTCTGTTTCGCTGCCGGTCCGATTAGCAAAGACGCTGCC TTCGTCAAAGACCCAATCACCTTCGACGGCTTTCGCTGGTGCCATTACCCTCGGGATCGCTTTGTCCTGACCCCT GAGCTCGGAAAACTCGACGCTATGCTGAACGGTGCTGGTGAGATGCAGGCTGAAAAGTCCGCATCTTCCGCCTAT TTCGTTTCGATCACTAACACCAACATGCATTTCGGCTTCGGGCTCCAGGCATGTCCCGGTCGGTTCTTCGCATCG AATACTTTGAAGGCAATCCTGAGTCGCCTCATTCTTGACTATGAATTCAAATTCGTTGAAGACCTGCAGGGGAAG AGACCCAGTAATCTTGTGGTTGGGGAGCATATTCTTCCGAGTATGACTACGGAGATGCTGTTCCGGAAAAGACCT ATTGGGCTTTGA |
| Gene | >Pro_DTO377G3_2|g6400.t1 ATGGCCGGCCTACCCTTCTGGCCCCTCATTGGGGTGTTGGCTGTAGTGCTCTATCTCCTTCGACGACCACCACCT TCCAGTTTGAGACATATCCCAACGGTCAAGTACAATGCCTATCTACCAGATTTCATCAATCGACTCATGTACTAC CCCAAAGCTGCCTCGATGATCAGTGAAGGATATGAAAAGGTACGCAGCATACTGCAAACCACGCGTTCACCTCTA TTGACATTTCTGCAATTTCTAGTACAAGGATAGTCCATTTCGCCTGCTCACTGGCGATGGAGAAGTCATCGTCCT GCCCGTGAAATACCAGGATGAACTGAGACATCTTCCTCCTTCGAGACTCAGTTCTCTACATGCCCAATATGAAGT ACCATGAGCTTATTCGTACCACATTACGTTGAGATGCTGAAGCTAATATAATATTCACAGAACGCGTTGGGCCAG TACACCAACATCATCATCGACACCCTTCTACCTTCTATGACCGTGCGGAAAAAGTTGACGCCCAGTCTTGGTACC AACATCATTTAGTTCTCTTATTTTCAGCCTCGTGCTAGAGACCTAATATATCGAATAGGTCGCGTTGTTCCCGGG ATCATCGACGAGCTGCGAACAGCATTCGAAACTGCTCTCCCAGGATGCGAAGGTGGGACCGACCAACCATGCAGA TCAACACTCGGATACTGACAGAGAGGTACTGAACACAGATACCTGGATTCAAATTAACCCAAACGAGATGTTCAC CCGACTAATCGCCCTCGCGACATCCCGCATGATGGCCGGCGACGCCCTCCGCGAAAACGAAGAATGGCTCAACGT CGCAAGCAACTACGCCGTGAACGTGGGAATCACCATTCTCCTGCTCCGCCCTGTCCCCAAATACCTCCGTCCCAT CGTAGCGCGCTTCCTCCCCAGTGTCCGTAAGATGAGGAAGCAGTTGCGCTTCGCGAAAGACCTCTTCATTCCGAT GATCCACGAGCGCAGACTGGCACAACAGGCTAAAGACCCCAATTATACCAAGCCGGATGACTTCTTGCAGTGGAT GATGGATCTGAGCGAGGAAAAGAAGGAGGACCTCAAACCGGATACCCTGGCGCATCACATGCTGCTCTTGGTCAC ACTGGCTGTTACTCACACCAGCACGATGGCCTTGTGCCACTGTATCTTCGATTTGGTTACCAGACCTGAATACAT TGAGCCACTGCGGGAAGAAATCACACGGACTCTGCCTGATGGCTGGTATCGGACGACTCAGGCTGCGCTTAAGGA GCAGTCCCGTCTGGACAGCTTCTTGCGCGAATCTCAACGCTTCGCTCCGCCTGGTGAATGTGAGTATCGGATCTT TTCTTATGGCTGCGCCGTATAACCAGTCAGGGTTAGTGTGTTAGTATCATGCTCTAATCACCTACGTTGTCTAGT GAACTTCCACCGCATCGTCAAAGAACCAATCACGCTCCATGATGGCCTCGTTCTTCCAGTAGAGACACACGTCTG TTTCGCTGCCGGTCCGATTAGCAAAGACGCTGCCTTCGTCAAAGACCCAATCACCTTCGACGGCTTTCGCTGGTG CCATTACCCTCGGGATCGCTTTGTCCTGACCCCTGAGCTCGGAAAACTCGACGCTATGCTGAACGGTGCTGGTGA GATGCAGGCTGAAAAGTCCGCATCTTCCGCCTATTTCGTTTCGATCACTAACACCAACATGCATTTCGGCTTCGG GCTCCAGGCATGTCCCGGTCGGTTCTTCGCATCGAATACTTTGAAGGCAATCCTGAGTCGCCTCATTCTTGACTA TGAATTCAAATTCGTTGAAGACCTGCAGGGGAAGAGACCCAGTAATCTTGTGGTTGGGGAGCATATTCTTCCGAG TATGACTACGGAGATGCTGTTCCGGAAAAGACCTATTGGGCTTTGA |