Protein ID | Pro_DTO377G3_2|g6399.t1 |
Gene name | |
Location | scaffold_17:88158..91110 |
Strand | + |
Gene length (bp) | 2952 |
Transcript length (bp) | 2697 |
Coding sequence length (bp) | 2697 |
Protein length (aa) | 899 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00400 | WD40 | WD domain, G-beta repeat | 7.0E-03 | 147 | 179 |
PF00400 | WD40 | WD domain, G-beta repeat | 7.9E-06 | 335 | 366 |
PF00400 | WD40 | WD domain, G-beta repeat | 3.3E-04 | 372 | 408 |
PF00400 | WD40 | WD domain, G-beta repeat | 2.1E-09 | 456 | 494 |
PF04003 | Utp12 | Dip2/Utp12 Family | 2.9E-28 | 751 | 856 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005515 | protein binding | Yes |
GO:0005488 | binding | No |
GO:0003674 | molecular_function | No |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
3d_25C | Three days - 25 degrees Celsius | 16.07 | 9.00 | 23.15 |
5d_25C | Five days - 25 degrees Celsius | 11.24 | 5.78 | 16.70 |
7d_25C | Seven days - 25 degrees Celsius | 10.10 | 5.09 | 15.11 |
10d_25C | Ten days - 25 degrees Celsius | 7.40 | 3.46 | 11.34 |
7d_15C | Seven days - 15 degrees Celsius | 11.91 | 6.27 | 17.56 |
7d_30C | Seven days - 30 degrees Celsius | 10.71 | 5.49 | 15.93 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
3d_25C | 5d_25C | 0.183254 | no |
3d_25C | 7d_25C | 0.061291 | no |
3d_25C | 7d_15C | 0.271936 | no |
3d_25C | 7d_30C | 0.114615 | no |
3d_25C | 10d_25C | 0.004450 | yes |
5d_25C | 7d_25C | 0.774468 | no |
5d_25C | 7d_15C | 0.884114 | no |
5d_25C | 7d_30C | 0.910349 | no |
5d_25C | 10d_25C | 0.157056 | no |
7d_25C | 7d_15C | 0.616159 | no |
7d_25C | 7d_30C | 0.885476 | no |
7d_25C | 10d_25C | 0.306777 | no |
7d_15C | 7d_30C | 0.768770 | no |
7d_15C | 10d_25C | 0.088027 | no |
7d_30C | 10d_25C | 0.216342 | no |
Orthofinder run ID | 2 |
Orthogroup | 8509 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g6399.t1 MKTDFKFSNLLGTVYRKGNLLFTPDGTCLLSPVGNRVSVFDLVQNTSYTLPFSHRTNIDRLDLTPKGNLLLTVDE NGRAILTNFHRRIAIHHFSFKGRVSALKFSPSGRHFAVGVGRRLQIWQTPSTPGTETNGEIEFAPFVLHRDLAAH FDNIESVEWSSDSRFLLTAAKDLTARVWSMDPEEGFEPTTLAGHRQGVVAAYFNATQEVIYTVSQDGALFRWEYV SKKDEETNEDISDARWRIVKKDFFMQNDAKVNCAAFHAPTNLLVVGFSNGLFGLYDLPEFNMIHQLSVSQSNIDV VTINKSGEWLAFGSSKHGQLLVWEWQSESYILKQQGHLDSMNALAYSPDGQRIVTAADDGKIKVWDVKSGFCIVT FTEHTSGVTACQFAKKGSVLFTASLDGSIRAWDLIRYRNFRTFTAPSRLSFSSLAVDPSGEVICAGSPDSFDIHV WSVQTGQLLDQLSGHEGPVSSLAFAADGNHLVSGSWDHTVRIWSIFGRSQTSEPLQLMSDILSVAFRPDGQQVAA STLDGQLSFWSVEDAVQQGGVDGRHDVSGGRRVADRRTAANAAGTKSFNRITYSADGSCILAGGNSKYICLYDVG TGSLIKKFTVSVNTSIDGTQEFLSSRDMTEAGPRALIDETGEASDHDDRVDTTLPGARRGDAGARTTRPEVRVTS VDFAPTGRAFCAASTEGLLVYSLDTDFIFDPYDLDITITPSSILATLDAAKEAAISNTVDEENTFLKALIMAFRL NEQKLLRVVYEAIPPSDIPHVVRSVPSVYLPRLLRFVAHAAEETPHLEFNLMWIESLFSSHGRYFKDNTGTFATE LRAVQRAVDDIRENLKRLTEKNLYDLNYLLSKPVLGNKKTSSALLAMETEDAEVPDDQMVDADEGEGDWVGFE* |
Coding | >Pro_DTO377G3_2|g6399.t1 ATGAAGACAGACTTCAAGTTCTCCAACCTTTTGGGGACGGTATATCGCAAAGGAAATCTTCTCTTTACTCCCGAT GGCACATGCTTGCTTTCGCCAGTAGGCAATCGAGTCTCGGTCTTCGATCTGGTACAAAATACTTCCTATACCTTG CCTTTTTCGCACCGTACCAACATCGACCGTCTCGATCTTACGCCCAAGGGTAATCTTCTGTTGACCGTGGATGAA AATGGTCGCGCAATTTTGACCAACTTCCACCGGCGCATCGCCATTCACCACTTTTCCTTCAAAGGACGAGTGTCC GCACTCAAGTTCTCCCCGTCCGGTCGACATTTCGCCGTTGGCGTGGGCAGACGCCTGCAGATCTGGCAGACGCCC TCCACCCCGGGTACCGAAACCAATGGCGAGATTGAATTTGCCCCGTTCGTTCTACACCGGGATCTTGCTGCCCAC TTTGACAACATCGAAAGTGTCGAATGGTCCAGCGATTCGCGCTTCTTGCTCACTGCCGCCAAGGATTTGACGGCG CGAGTATGGAGCATGGATCCGGAGGAAGGTTTCGAGCCGACTACTTTGGCGGGACACAGACAGGGTGTAGTGGCT GCCTATTTCAATGCGACACAAGAAGTGATCTACACTGTCAGCCAAGATGGCGCACTCTTCCGCTGGGAGTATGTT TCAAAAAAAGACGAGGAAACGAATGAAGACATTTCCGATGCCCGATGGAGGATCGTCAAAAAAGATTTCTTCATG CAGAACGACGCCAAGGTCAACTGTGCTGCGTTCCATGCGCCGACCAACCTTCTGGTGGTAGGGTTCTCCAATGGT TTATTCGGGCTCTATGACCTTCCAGAGTTCAACATGATCCATCAATTGAGTGTCTCCCAGAGCAATATCGATGTT GTGACAATTAACAAATCAGGCGAATGGCTAGCATTCGGATCGTCTAAGCACGGTCAATTGCTGGTGTGGGAATGG CAGTCCGAGTCATATATCCTCAAACAACAAGGGCACCTTGATTCTATGAACGCCCTCGCATATTCACCGGACGGT CAGAGGATTGTCACGGCTGCCGATGACGGTAAAATCAAAGTTTGGGATGTCAAGTCAGGCTTCTGTATTGTTACC TTTACAGAACATACCAGTGGAGTGACCGCATGTCAGTTTGCGAAGAAGGGAAGTGTGTTGTTCACAGCGTCTTTG GACGGCTCTATCCGTGCATGGGATCTTATTCGCTACCGTAACTTCCGAACCTTCACAGCACCATCCCGACTGTCG TTCTCCTCGTTGGCCGTGGACCCTAGTGGAGAGGTGATCTGTGCTGGTTCACCAGACTCCTTCGACATTCACGTA TGGTCCGTGCAGACCGGTCAATTACTTGACCAGCTCTCCGGCCACGAGGGTCCGGTTTCCAGTCTTGCCTTTGCT GCCGATGGTAACCACCTTGTCAGTGGAAGTTGGGACCATACAGTTCGCATTTGGAGCATCTTCGGGCGGTCACAG ACCAGTGAACCTCTGCAGCTCATGTCAGACATTCTCAGTGTGGCTTTCCGCCCAGATGGGCAACAAGTCGCCGCA TCTACCCTAGACGGTCAGCTTTCATTCTGGTCTGTTGAAGATGCTGTACAGCAAGGAGGAGTTGACGGTCGCCAT GACGTCTCTGGAGGACGCCGAGTGGCCGACCGCCGTACTGCTGCCAATGCCGCAGGCACTAAATCCTTCAACCGA ATCACGTACAGCGCAGACGGTAGCTGCATTCTGGCCGGTGGCAACAGCAAGTACATCTGCTTGTATGATGTCGGA ACGGGGTCCTTGATCAAGAAGTTCACCGTTTCCGTCAACACCTCTATCGATGGCACCCAGGAGTTCCTAAGCAGT CGTGACATGACCGAAGCTGGTCCCCGTGCGCTTATTGACGAGACTGGCGAAGCGTCTGATCACGACGATCGTGTT GATACCACTCTTCCTGGCGCGAGACGCGGTGATGCTGGTGCGCGCACCACACGCCCAGAAGTCCGCGTGACGTCT GTGGATTTCGCACCGACTGGACGAGCATTCTGCGCCGCCTCTACCGAAGGACTCCTTGTTTACAGTTTGGATACT GACTTCATCTTTGATCCCTATGATCTGGACATCACAATCACACCGTCAAGCATCCTTGCCACACTAGATGCTGCC AAGGAAGCTGCCATATCCAATACTGTGGATGAGGAAAATACCTTCCTCAAAGCTCTTATCATGGCCTTCCGATTG AATGAACAAAAGCTACTCCGTGTCGTGTATGAAGCGATCCCTCCGTCAGATATTCCCCATGTGGTTCGCTCCGTG CCCTCCGTCTATTTACCTCGCCTTCTCCGATTTGTAGCACATGCCGCCGAAGAAACTCCTCATCTTGAGTTCAAC CTCATGTGGATTGAGTCTTTGTTCAGCAGCCATGGTCGCTATTTCAAGGATAACACAGGCACATTCGCAACCGAG CTTCGTGCCGTCCAGCGTGCTGTCGATGACATTCGCGAGAATCTAAAACGGTTGACGGAAAAGAACCTTTACGAT CTCAACTACCTGCTCTCTAAGCCTGTTCTGGGGAACAAGAAAACTAGCAGTGCTTTGTTGGCCATGGAGACCGAG GATGCTGAGGTTCCTGATGATCAGATGGTCGATGCTGACGAGGGAGAAGGTGACTGGGTTGGCTTTGAATGA |
Transcript | >Pro_DTO377G3_2|g6399.t1 ATGAAGACAGACTTCAAGTTCTCCAACCTTTTGGGGACGGTATATCGCAAAGGAAATCTTCTCTTTACTCCCGAT GGCACATGCTTGCTTTCGCCAGTAGGCAATCGAGTCTCGGTCTTCGATCTGGTACAAAATACTTCCTATACCTTG CCTTTTTCGCACCGTACCAACATCGACCGTCTCGATCTTACGCCCAAGGGTAATCTTCTGTTGACCGTGGATGAA AATGGTCGCGCAATTTTGACCAACTTCCACCGGCGCATCGCCATTCACCACTTTTCCTTCAAAGGACGAGTGTCC GCACTCAAGTTCTCCCCGTCCGGTCGACATTTCGCCGTTGGCGTGGGCAGACGCCTGCAGATCTGGCAGACGCCC TCCACCCCGGGTACCGAAACCAATGGCGAGATTGAATTTGCCCCGTTCGTTCTACACCGGGATCTTGCTGCCCAC TTTGACAACATCGAAAGTGTCGAATGGTCCAGCGATTCGCGCTTCTTGCTCACTGCCGCCAAGGATTTGACGGCG CGAGTATGGAGCATGGATCCGGAGGAAGGTTTCGAGCCGACTACTTTGGCGGGACACAGACAGGGTGTAGTGGCT GCCTATTTCAATGCGACACAAGAAGTGATCTACACTGTCAGCCAAGATGGCGCACTCTTCCGCTGGGAGTATGTT TCAAAAAAAGACGAGGAAACGAATGAAGACATTTCCGATGCCCGATGGAGGATCGTCAAAAAAGATTTCTTCATG CAGAACGACGCCAAGGTCAACTGTGCTGCGTTCCATGCGCCGACCAACCTTCTGGTGGTAGGGTTCTCCAATGGT TTATTCGGGCTCTATGACCTTCCAGAGTTCAACATGATCCATCAATTGAGTGTCTCCCAGAGCAATATCGATGTT GTGACAATTAACAAATCAGGCGAATGGCTAGCATTCGGATCGTCTAAGCACGGTCAATTGCTGGTGTGGGAATGG CAGTCCGAGTCATATATCCTCAAACAACAAGGGCACCTTGATTCTATGAACGCCCTCGCATATTCACCGGACGGT CAGAGGATTGTCACGGCTGCCGATGACGGTAAAATCAAAGTTTGGGATGTCAAGTCAGGCTTCTGTATTGTTACC TTTACAGAACATACCAGTGGAGTGACCGCATGTCAGTTTGCGAAGAAGGGAAGTGTGTTGTTCACAGCGTCTTTG GACGGCTCTATCCGTGCATGGGATCTTATTCGCTACCGTAACTTCCGAACCTTCACAGCACCATCCCGACTGTCG TTCTCCTCGTTGGCCGTGGACCCTAGTGGAGAGGTGATCTGTGCTGGTTCACCAGACTCCTTCGACATTCACGTA TGGTCCGTGCAGACCGGTCAATTACTTGACCAGCTCTCCGGCCACGAGGGTCCGGTTTCCAGTCTTGCCTTTGCT GCCGATGGTAACCACCTTGTCAGTGGAAGTTGGGACCATACAGTTCGCATTTGGAGCATCTTCGGGCGGTCACAG ACCAGTGAACCTCTGCAGCTCATGTCAGACATTCTCAGTGTGGCTTTCCGCCCAGATGGGCAACAAGTCGCCGCA TCTACCCTAGACGGTCAGCTTTCATTCTGGTCTGTTGAAGATGCTGTACAGCAAGGAGGAGTTGACGGTCGCCAT GACGTCTCTGGAGGACGCCGAGTGGCCGACCGCCGTACTGCTGCCAATGCCGCAGGCACTAAATCCTTCAACCGA ATCACGTACAGCGCAGACGGTAGCTGCATTCTGGCCGGTGGCAACAGCAAGTACATCTGCTTGTATGATGTCGGA ACGGGGTCCTTGATCAAGAAGTTCACCGTTTCCGTCAACACCTCTATCGATGGCACCCAGGAGTTCCTAAGCAGT CGTGACATGACCGAAGCTGGTCCCCGTGCGCTTATTGACGAGACTGGCGAAGCGTCTGATCACGACGATCGTGTT GATACCACTCTTCCTGGCGCGAGACGCGGTGATGCTGGTGCGCGCACCACACGCCCAGAAGTCCGCGTGACGTCT GTGGATTTCGCACCGACTGGACGAGCATTCTGCGCCGCCTCTACCGAAGGACTCCTTGTTTACAGTTTGGATACT GACTTCATCTTTGATCCCTATGATCTGGACATCACAATCACACCGTCAAGCATCCTTGCCACACTAGATGCTGCC AAGGAAGCTGCCATATCCAATACTGTGGATGAGGAAAATACCTTCCTCAAAGCTCTTATCATGGCCTTCCGATTG AATGAACAAAAGCTACTCCGTGTCGTGTATGAAGCGATCCCTCCGTCAGATATTCCCCATGTGGTTCGCTCCGTG CCCTCCGTCTATTTACCTCGCCTTCTCCGATTTGTAGCACATGCCGCCGAAGAAACTCCTCATCTTGAGTTCAAC CTCATGTGGATTGAGTCTTTGTTCAGCAGCCATGGTCGCTATTTCAAGGATAACACAGGCACATTCGCAACCGAG CTTCGTGCCGTCCAGCGTGCTGTCGATGACATTCGCGAGAATCTAAAACGGTTGACGGAAAAGAACCTTTACGAT CTCAACTACCTGCTCTCTAAGCCTGTTCTGGGGAACAAGAAAACTAGCAGTGCTTTGTTGGCCATGGAGACCGAG GATGCTGAGGTTCCTGATGATCAGATGGTCGATGCTGACGAGGGAGAAGGTGACTGGGTTGGCTTTGAATGA |
Gene | >Pro_DTO377G3_2|g6399.t1 ATGAAGACAGACTTCAAGGTAGGTACTACGCTTGGATTCTTGATCGCATGCAATTGCCAGCAAGCCTGGATTATT AAGATTTATACTAATACCCTCAATTTTAGTTCTCCAACCTTTTGGGGACGGTATATCGCAAAGGAAATCTTCTCT TTACTCCCGATGGCACATGCTTGCTTTCGCCAGTAGGCAATCGAGTCTCGGTCTTCGATCTGGTACAGTATGTGT CGCCCGACAGTCCTTCATTCGGTGATTTGAAACCAGCCCGCTCACAATTGCTTCTATAGAAATACTTCCTATACC TTGCCTTTTTCGCACCGTACCAACATCGACCGTCTCGATCTTACGCCCAAGGGTAATCTTCTGTTGACCGTGGAT GAAAATGGTCGCGCAATTTTGACCAACTTCCACCGGCGCATCGCCATTCACCACTTTTCCTTCAAAGGACGAGTG TCCGCACTCAAGTTCTCCCCGTCCGGTCGACATTTCGCCGTTGGCGTGGGCAGACGCCTGCAGATCTGGCAGACG CCCTCCACCCCGGGTACCGAAACCAATGGCGAGATTGAATTTGCCCCGTTCGTTCTACACCGGGATCTTGCTGCC CACTTTGACAACATCGAAAGTGTCGAATGGTCCAGCGATTCGCGCTTCTTGCTCACTGCCGCCAAGGATTTGACG GCGCGAGTATGGAGCATGGATCCGGAGGAAGGTTTCGAGCCGACTACTTTGGCGGGACACAGACAGGGTGTAGTG GCTGCCTATTTCAATGCGACACAAGAAGTGGTAGGTGCTTACTGGAAATTGGACTGGAATACATACTGATTCTTA TAGATCTACACTGTCAGCCAAGATGGCGCACTCTTCCGCTGGGAGTATGTTTCAAAAAAAGACGAGGAAACGAAT GAAGACATTTCCGATGCCCGATGGAGGATCGTCAAAAAAGATTTCTTCATGCAGAACGACGCCAAGGTCAACTGT GCTGCGTTCCATGCGCCGACCAACCTTCTGGTGGTAGGGTTCTCCAATGGTTTATTCGGGCTCTATGACCTTCCA GAGTTCAACATGATCCATCAATTGAGGTACATCAGTCTGTGACACCCTCCCTTTCACAGTGGCTAATATATCCCC TCTAGTGTCTCCCAGAGCAATATCGATGTTGTGACAATTAACAAATCAGGCGAATGGCTAGCATTCGGATCGTCT AAGCACGGTCAATTGCTGGTGTGGGAATGGCAGTCCGAGTCATATATCCTCAAACAACAAGGGCACCTTGATTCT ATGAACGCCCTCGCATATTCACCGGACGGTCAGAGGATTGTCACGGCTGCCGATGACGGTAAAATCAAAGTTTGG GATGTCAAGTCAGGCTTCTGTATTGTTACCTTTACAGAACATACCAGTGGAGTGACCGCATGTCAGTTTGCGAAG AAGGGAAGTGTGTTGTTCACAGCGTCTTTGGACGGCTCTATCCGTGCATGGGATCTTATTCGCTACCGTAACTTC CGAACCTTCACAGCACCATCCCGACTGTCGTTCTCCTCGTTGGCCGTGGACCCTAGTGGAGAGGTGATCTGTGCT GGTTCACCAGACTCCTTCGACATTCACGTATGGTCCGTGCAGACCGGTCAATTACTTGACCAGCTCTCCGGCCAC GAGGGTCCGGTTTCCAGTCTTGCCTTTGCTGCCGATGGTAACCACCTTGTCAGTGGAAGTTGGGACCATACAGTT CGCATTTGGAGCATCTTCGGGCGGTCACAGACCAGTGAACCTCTGCAGCTCATGTCAGACATTCTCAGTGTGGCT TTCCGCCCAGATGGGCAACAAGTCGCCGCATCTACCCTAGACGGTCAGCTTTCATTCTGGTCTGTTGAAGATGCT GTACAGCAAGGAGGAGTTGACGGTCGCCATGACGTCTCTGGAGGACGCCGAGTGGCCGACCGCCGTACTGCTGCC AATGCCGCAGGCACTAAATCCTTCAACCGAATCACGTACAGCGCAGACGGTAGCTGCATTCTGGCCGGTGGCAAC AGCAAGTACATCTGCTTGTATGATGTCGGAACGGGGTCCTTGATCAAGAAGTTCACCGTTTCCGTCAACACCTCT ATCGATGGCACCCAGGAGTTCCTAAGCAGTCGTGACATGACCGAAGCTGGTCCCCGTGCGCTTATTGACGAGACT GGCGAAGCGTCTGATCACGACGATCGTGTTGATACCACTCTTCCTGGCGCGAGACGCGGTGATGCTGGTGCGCGC ACCACACGCCCAGAAGTCCGCGTGACGTCTGTGGATTTCGCACCGACTGGACGAGCATTCTGCGCCGCCTCTACC GAAGGACTCCTTGTTTACAGTTTGGATACTGACTTCATCTTTGATCCCTATGATCTGGACATCACAATCACACCG TCAAGCATCCTTGCCACACTAGATGCTGCCAAGGAAGCTGCCATATCCAATACTGTGGATGAGGAAAATACCTTC CTCAAAGCTCTTATCATGGCCTTCCGATTGAATGAACAAAAGCTACTCCGTGTCGTGTATGAAGCGATCCCTCCG TCAGATATTCCCCATGTGGTTCGCTCCGTGCCCTCCGTCTATTTACCTCGCCTTCTCCGATTTGTAGCACATGCC GCCGAAGAAACTCCTCATCTTGAGTTCAACCTCATGTGGATTGAGTCTTTGTTCAGCAGCCATGGTCGCTATTTC AAGGATAACACAGGCACATTCGCAACCGAGCTTCGTGCCGTCCAGCGTGCTGTCGATGACATTCGCGAGAATCTA AAACGGTTGACGGAAAAGAACCTTTACGATCTCAACTACCTGCTCTCTAAGCCTGTTCTGGGGAACAAGAAAACT AGCAGTGCTTTGTTGGCCATGGAGACCGAGGATGCTGAGGTTCCTGATGATCAGATGGTCGATGCTGACGAGGGA GAAGGTGACTGGGTTGGCTTTGAATGA |