© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6395.t1 |
| Gene name | |
| Location | scaffold_17:78795..80849 |
| Strand | - |
| Gene length (bp) | 2054 |
| Transcript length (bp) | 1956 |
| Coding sequence length (bp) | 1956 |
| Protein length (aa) | 652 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07732 | Cu-oxidase_3 | Multicopper oxidase | 4.7E-42 | 27 | 142 |
| PF07731 | Cu-oxidase_2 | Multicopper oxidase | 3.6E-38 | 365 | 496 |
| PF00394 | Cu-oxidase | Multicopper oxidase | 4.2E-33 | 150 | 301 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0005507 | copper ion binding | Yes |
| GO:0046914 | transition metal ion binding | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 477.86 | 257.51 | 698.20 |
| 5d_25C | Five days - 25 degrees Celsius | 312.17 | 167.40 | 456.94 |
| 7d_25C | Seven days - 25 degrees Celsius | 352.32 | 178.74 | 525.91 |
| 10d_25C | Ten days - 25 degrees Celsius | 179.88 | 96.64 | 263.11 |
| 7d_15C | Seven days - 15 degrees Celsius | 292.29 | 132.88 | 451.70 |
| 7d_30C | Seven days - 30 degrees Celsius | 163.03 | 92.87 | 233.19 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.101429 | no |
| 3d_25C | 7d_25C | 0.287937 | no |
| 3d_25C | 7d_15C | 0.082307 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.730872 | no |
| 5d_25C | 7d_15C | 0.877361 | no |
| 5d_25C | 7d_30C | 0.003625 | yes |
| 5d_25C | 10d_25C | 0.024892 | yes |
| 7d_25C | 7d_15C | 0.605230 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.005626 | yes |
| 7d_15C | 7d_30C | 0.028871 | yes |
| 7d_15C | 10d_25C | 0.084423 | no |
| 7d_30C | 10d_25C | 0.771460 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6395.t1 MAKFSLFALATWAGLAAAKDVYLKWDITWVNAAPDGFERPVIGINGQWPCPQIDVNLGDQLIVDVYNRLGNESTA IHWHGMRQHGSGVMDGAVGVTQCPIAPGAHMQYHFDVNQTGTYWYHSHNAGQYPDGFRGALIVHDPSPPFHYDDE FTLTLSDWYHKEMPELLGTITAASHGQEPLPDAALINDSTNTKIKVLPNKTYLVHIICVGNWPGHFWVFDGHEMT VVEVDGVYTEPYPAGDKFLRVATGQRMSVLIKTKPDASQNFAIWDTMDVNMMFIFENRTIPENYNPNATAWLVYD DAKPLPPPPVFNNIDAATDFVDDVLLVPADHEPILQPVDHQIILDTAAGLVDGVPRFTVNGKTYIAPKVPSLYTA NTVGPEFSSNPDVYGQVNPFVVKYNEVVEIIINNHHNNLHPWHLHGHQFQVLQRTPVDGGFYTGLSSNVSNTPIR RDTIMVQNNGHTVIRFRADNPGVWMLHCHVEWHVETGLMATIIEAPETFQHSLHAPPQSHYDTCAAYPQGVSGNA AGKNGLDLTGLDTTPPTTNHGALYTATKGTNAPAEANQPQGSSQASVPKPSPSANTDGYWKVPHTDVYVEHPDKP HDHHITIHEESTKGPWPNQNTYSGYVINNGHSSPIKDSNDDDILAEIKDWE* |
| Coding | >Pro_DTO377G3_2|g6395.t1 ATGGCCAAGTTTAGTTTGTTTGCGCTGGCCACCTGGGCTGGTCTAGCCGCCGCCAAGGACGTTTACCTGAAATGG GACATTACTTGGGTGAATGCTGCCCCGGATGGGTTTGAGCGCCCGGTCATTGGTATCAATGGCCAATGGCCCTGC CCGCAGATCGATGTGAACTTGGGTGACCAACTGATCGTCGATGTCTACAACCGTCTCGGAAACGAGTCCACGGCT ATCCACTGGCACGGCATGCGCCAGCATGGCAGTGGAGTTATGGATGGCGCCGTTGGAGTCACTCAGTGCCCAATT GCCCCCGGCGCACACATGCAATATCACTTTGATGTCAACCAAACTGGAACATACTGGTACCACTCACACAACGCG GGCCAGTACCCCGATGGATTCCGTGGTGCTCTGATTGTCCACGACCCTAGCCCTCCTTTCCACTATGACGATGAA TTCACACTCACTCTGAGCGACTGGTACCACAAGGAGATGCCGGAGCTGCTCGGTACGATCACTGCGGCCTCCCAT GGCCAAGAGCCCCTCCCTGACGCGGCATTGATCAACGACTCAACCAACACCAAGATCAAGGTTCTGCCCAACAAG ACGTATCTGGTTCACATCATCTGCGTTGGAAACTGGCCCGGCCACTTCTGGGTGTTCGATGGCCATGAGATGACT GTCGTGGAGGTCGACGGCGTCTATACCGAGCCCTACCCGGCTGGAGACAAGTTCCTGCGCGTTGCGACTGGTCAG CGAATGAGTGTCTTGATTAAAACCAAACCTGATGCCAGTCAGAACTTTGCTATTTGGGATACCATGGATGTCAAC ATGATGTTCATCTTCGAAAATCGTACCATCCCGGAGAACTACAACCCCAATGCTACCGCCTGGTTGGTGTACGAC GATGCCAAGCCCCTACCTCCGCCTCCTGTCTTCAATAACATTGACGCCGCAACGGACTTTGTGGATGATGTCCTA TTGGTACCTGCCGACCATGAGCCCATCCTGCAGCCCGTGGACCACCAGATCATTTTGGATACCGCCGCCGGTCTG GTAGACGGTGTTCCGCGCTTCACTGTCAACGGCAAGACGTACATCGCCCCGAAGGTGCCATCGCTCTACACTGCC AACACCGTCGGTCCCGAGTTTTCCTCCAATCCCGATGTATACGGCCAAGTAAACCCCTTCGTCGTGAAGTACAAC GAGGTCGTCGAAATCATCATCAACAACCACCACAACAACCTGCACCCATGGCACTTGCACGGTCACCAATTCCAG GTTCTGCAGCGTACCCCAGTTGATGGCGGCTTCTACACGGGTCTATCGAGCAACGTCTCCAACACCCCGATCAGA CGCGACACCATCATGGTCCAGAACAACGGCCACACCGTCATCCGCTTCCGCGCCGATAACCCAGGTGTCTGGATG CTCCACTGCCACGTCGAGTGGCACGTCGAGACTGGTCTCATGGCCACTATCATCGAGGCCCCCGAGACCTTCCAG CACAGCTTGCACGCTCCCCCGCAGAGCCATTACGACACCTGCGCTGCCTACCCTCAAGGCGTCAGCGGAAATGCT GCTGGTAAAAATGGTCTTGATCTGACTGGGCTTGACACCACACCTCCCACCACCAATCACGGCGCTCTGTATACT GCCACCAAGGGCACAAATGCTCCCGCTGAGGCGAATCAACCTCAGGGATCGTCCCAAGCATCGGTGCCGAAGCCA TCTCCCAGTGCCAACACAGATGGTTACTGGAAAGTCCCTCACACTGATGTCTACGTCGAGCACCCCGACAAACCG CACGACCACCACATCACTATCCACGAGGAGTCGACCAAGGGCCCGTGGCCAAACCAGAATACCTATAGCGGCTAT GTTATTAATAACGGTCACAGCTCTCCCATCAAAGACTCTAATGATGATGATATCCTGGCTGAGATCAAGGATTGG GAGTGA |
| Transcript | >Pro_DTO377G3_2|g6395.t1 ATGGCCAAGTTTAGTTTGTTTGCGCTGGCCACCTGGGCTGGTCTAGCCGCCGCCAAGGACGTTTACCTGAAATGG GACATTACTTGGGTGAATGCTGCCCCGGATGGGTTTGAGCGCCCGGTCATTGGTATCAATGGCCAATGGCCCTGC CCGCAGATCGATGTGAACTTGGGTGACCAACTGATCGTCGATGTCTACAACCGTCTCGGAAACGAGTCCACGGCT ATCCACTGGCACGGCATGCGCCAGCATGGCAGTGGAGTTATGGATGGCGCCGTTGGAGTCACTCAGTGCCCAATT GCCCCCGGCGCACACATGCAATATCACTTTGATGTCAACCAAACTGGAACATACTGGTACCACTCACACAACGCG GGCCAGTACCCCGATGGATTCCGTGGTGCTCTGATTGTCCACGACCCTAGCCCTCCTTTCCACTATGACGATGAA TTCACACTCACTCTGAGCGACTGGTACCACAAGGAGATGCCGGAGCTGCTCGGTACGATCACTGCGGCCTCCCAT GGCCAAGAGCCCCTCCCTGACGCGGCATTGATCAACGACTCAACCAACACCAAGATCAAGGTTCTGCCCAACAAG ACGTATCTGGTTCACATCATCTGCGTTGGAAACTGGCCCGGCCACTTCTGGGTGTTCGATGGCCATGAGATGACT GTCGTGGAGGTCGACGGCGTCTATACCGAGCCCTACCCGGCTGGAGACAAGTTCCTGCGCGTTGCGACTGGTCAG CGAATGAGTGTCTTGATTAAAACCAAACCTGATGCCAGTCAGAACTTTGCTATTTGGGATACCATGGATGTCAAC ATGATGTTCATCTTCGAAAATCGTACCATCCCGGAGAACTACAACCCCAATGCTACCGCCTGGTTGGTGTACGAC GATGCCAAGCCCCTACCTCCGCCTCCTGTCTTCAATAACATTGACGCCGCAACGGACTTTGTGGATGATGTCCTA TTGGTACCTGCCGACCATGAGCCCATCCTGCAGCCCGTGGACCACCAGATCATTTTGGATACCGCCGCCGGTCTG GTAGACGGTGTTCCGCGCTTCACTGTCAACGGCAAGACGTACATCGCCCCGAAGGTGCCATCGCTCTACACTGCC AACACCGTCGGTCCCGAGTTTTCCTCCAATCCCGATGTATACGGCCAAGTAAACCCCTTCGTCGTGAAGTACAAC GAGGTCGTCGAAATCATCATCAACAACCACCACAACAACCTGCACCCATGGCACTTGCACGGTCACCAATTCCAG GTTCTGCAGCGTACCCCAGTTGATGGCGGCTTCTACACGGGTCTATCGAGCAACGTCTCCAACACCCCGATCAGA CGCGACACCATCATGGTCCAGAACAACGGCCACACCGTCATCCGCTTCCGCGCCGATAACCCAGGTGTCTGGATG CTCCACTGCCACGTCGAGTGGCACGTCGAGACTGGTCTCATGGCCACTATCATCGAGGCCCCCGAGACCTTCCAG CACAGCTTGCACGCTCCCCCGCAGAGCCATTACGACACCTGCGCTGCCTACCCTCAAGGCGTCAGCGGAAATGCT GCTGGTAAAAATGGTCTTGATCTGACTGGGCTTGACACCACACCTCCCACCACCAATCACGGCGCTCTGTATACT GCCACCAAGGGCACAAATGCTCCCGCTGAGGCGAATCAACCTCAGGGATCGTCCCAAGCATCGGTGCCGAAGCCA TCTCCCAGTGCCAACACAGATGGTTACTGGAAAGTCCCTCACACTGATGTCTACGTCGAGCACCCCGACAAACCG CACGACCACCACATCACTATCCACGAGGAGTCGACCAAGGGCCCGTGGCCAAACCAGAATACCTATAGCGGCTAT GTTATTAATAACGGTCACAGCTCTCCCATCAAAGACTCTAATGATGATGATATCCTGGCTGAGATCAAGGATTGG GAGTGA |
| Gene | >Pro_DTO377G3_2|g6395.t1 ATGGCCAAGTTTAGTTTGTTTGCGCTGGCCACCTGGGCTGGTCTAGCCGCCGCCAAGGACGTTTACCTGAAATGG GACATTACTTGGGTGAATGCTGCCCCGGATGGGTTTGAGCGCCCGGTCATTGGTATCAATGGCCAATGGCCCTGC CCGCAGATCGATGTGAACTTGGGTGACCAACTGATCGTCGATGTCTACAACCGTCTCGGAAACGAGTCCACGGCT ATCCACTGGCACGGCATGCGCCAGCATGGCAGTGGAGTTATGGATGGCGCCGTTGGAGTCACTCAGTGCCCAATT GCCCCCGGCGCACACATGCAATATCACTTTGATGTGGGTAATCCCGGTGGAAAAGATGAACATATGCTAACTGCA GGACAGGTCAACCAAACTGGAACATACTGGTACCACTCACACAACGCGGGCCAGTACCCCGATGGATTCCGTGGT GCTCTGATTGTCCACGACCCTAGCCCTCCTTTCCACTATGACGATGAATTCACACTCACTCTGAGCGACTGGTAC CACAAGGAGATGCCGGAGCTGCTCGGTACGATCACTGCGGCCTCCCATGGCCAAGAGCCCCTCCCTGACGCGGCA TTGATCAACGACTCAACCAACACCAAGATCAAGGTTCTGCCCAACAAGACGTATCTGGTTCACATCATCTGCGTT GGAAACTGGCCCGGCCACTTCTGGGTGTTCGATGGCCATGAGATGACTGTCGTGGAGGTCGACGGCGTCTATACC GAGCCCTACCCGGCTGGAGACAAGTTCCTGCGCGTTGCGACTGGTCAGCGAATGAGTGTCTTGATTAAAACCAAA CCTGATGCCAGTCAGAACTTTGCTATTTGGGATACCATGGATGTCAACATGATGTTCATCTTCGAAAATCGTACC ATCCCGGAGAACTACAACCCCAATGCTACCGCCTGGTTGGTGTACGACGATGCCAAGCCCCTACCTCCGCCTCCT GTCTTCAATAACATTGACGCCGCAACGGACTTTGTGGATGATGTCCTATTGGTACCTGCCGACCATGAGCCCATC CTGCAGCCCGTGGACCACCAGATCATTTTGGATACCGCCGCCGGTCTGGTAGACGGTGTTCCGCGCTTCACTGTC AACGGCAAGACGTACATCGCCCCGAAGGTGCCATCGCTCTACACTGCCAACACCGTCGGTCCCGAGTTTTCCTCC AATCCCGATGTATACGGCCAAGTAAACCCCTTCGTCGTGAAGTACAACGAGGTCGTCGAAATCATCATCAACAAC CACCACAACAACCTGCACCCATGGCACTTGCACGGTCACCAATTCCAGGTTCTGCAGCGTACCCCAGTTGATGGC GGCTTCTACACGGGTCTATCGAGCAACGTCTCCAACACCCCGATCAGACGCGACACCATCATGGTCCAGAACAAC GGCCACACCGTCATCCGCTTCCGCGCCGATAACCCAGGTGTCTGGATGCTCCACTGCCACGTCGAGTGGCACGTC GAGACTGGTCTCATGGCCACTATCATCGAGGCCCCCGAGACCTTCCAGCACAGCTTGCACGCTCCCCCGCAGAGC CATTACGACACCTGCGCTGCCTACCCTCAAGGCGTCAGCGGAAATGCTGCTGGTAAAAATGGTCTTGATCTGACT GGGCTTGACACCACACCTCCCACCACCAATCACGGCGCTCTGTATACTGCCACCAAGGGCACAAATGCTCCCGCT GAGGCGAATCAACCTCAGGGATCGTCCCAAGCATCGGTGCCGAAGCCATCTCCCAGTGCCAACACAGATGGTTAC TGGAAAGTCCCTCACACTGATGTCTACGTCGAGCACCCCGACAAACCGCACGACCACCACATCACTATCCACGAG GAGTCGACCAAGGGCCCGTGGCCAAACCAGAATACCTATAGCGGCTATGTTATTAATAACGGTCACAGCTCTCCC ATCAAAGACTCTAAGTGAGTACACTCTAAAGGCCGAAATGTGCTCATCAACTAACTCTTTTCAGTGATGATGATA TCCTGGCTGAGATCAAGGATTGGGAGTGA |