© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6383.t1 |
| Gene name | |
| Location | scaffold_17:41584..43724 |
| Strand | - |
| Gene length (bp) | 2140 |
| Transcript length (bp) | 2076 |
| Coding sequence length (bp) | 2076 |
| Protein length (aa) | 692 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03815 | LCCL | LCCL domain | 7.4E-26 | 148 | 271 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 112 | 131 | 19 |
| 2 | 303 | 325 | 22 |
| 3 | 340 | 362 | 22 |
| 4 | 383 | 405 | 22 |
| 5 | 420 | 442 | 22 |
| 6 | 454 | 476 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 73.71 | 45.27 | 102.15 |
| 5d_25C | Five days - 25 degrees Celsius | 99.51 | 60.66 | 138.36 |
| 7d_25C | Seven days - 25 degrees Celsius | 110.45 | 66.63 | 154.27 |
| 10d_25C | Ten days - 25 degrees Celsius | 153.68 | 91.56 | 215.79 |
| 7d_15C | Seven days - 15 degrees Celsius | 103.09 | 61.98 | 144.19 |
| 7d_30C | Seven days - 30 degrees Celsius | 95.86 | 58.44 | 133.28 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.171568 | no |
| 3d_25C | 7d_25C | 0.052547 | no |
| 3d_25C | 7d_15C | 0.121948 | no |
| 3d_25C | 7d_30C | 0.243279 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.718403 | no |
| 5d_25C | 7d_15C | 0.918812 | no |
| 5d_25C | 7d_30C | 0.911607 | no |
| 5d_25C | 10d_25C | 0.041603 | yes |
| 7d_25C | 7d_15C | 0.827413 | no |
| 7d_25C | 7d_30C | 0.594967 | no |
| 7d_25C | 10d_25C | 0.143642 | no |
| 7d_15C | 7d_30C | 0.813452 | no |
| 7d_15C | 10d_25C | 0.070025 | no |
| 7d_30C | 10d_25C | 0.023673 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6383.t1 MFGEGREQAARLYVPPLLEDDERLNDPEASEDLPPPDVEAGSTLPVWLQESSKSFRWGWVPLPLRKVGRATVNWV KGPDPPHMLLLKPLFPRFQELPVQYLDHFFPKRKFKTLLLLLLYLSWFLPWFLVLLHSRSSGYIEGYGRPQTLSC STNFWEVDNGCGINGNDCRPFSSSTIPFRCPANCRDTKLLEPYVVGNNTYNYQGLVIGGPGPDGSDPALYRADSF ICQAAIHVGAISNDGGCGVVKLEGAAHSFPSVKQHGILSAGFPSTFPKAFSFLQLSSPQASCPSDPRWTLLGITA AAVGILWLFCTSPPVLFFSTFFMVFCHTGLVGDPPSYPFLADLVSSLLSRLLPASFVVYVLYKFCAAPLLQPISS PIYQLSKLFLFLPPLFTGALNNYTFARLIPLQRLTPMDIQKQPGAKLALALVIPIVISIILSQAWQIRQGGLLPR YLKIYGTMGVIILILLPLPGLRLRIHHYILAILLMPGTAFPTRPSLVYQGLLLGLFINGVARWGFASIIETPAAL GEQAPLGDGIHGWWGATYPNITATSVNVSLPELDSNHTYRGNGNITFSLWEHDRMADLAVDGVSLLLNDVERWRG YLDEDKRGEFTWHRHGHDGLELQTNPRLVNRDLDTNIEPRSVLLADSDPDDEPEDLFFRFAFLRGSEAGSYSPTG VWLSDGAWWPPAPPKK* |
| Coding | >Pro_DTO377G3_2|g6383.t1 ATGTTTGGAGAGGGCCGAGAGCAAGCCGCCAGGCTATATGTTCCTCCGCTGCTTGAGGATGACGAGCGTCTGAAC GATCCCGAAGCTTCCGAAGACCTGCCGCCGCCGGACGTTGAGGCAGGCAGCACTCTTCCCGTCTGGTTGCAAGAA TCATCCAAGTCGTTTCGCTGGGGATGGGTGCCGCTACCGCTCCGAAAGGTCGGTCGCGCCACCGTCAATTGGGTC AAGGGTCCCGATCCCCCGCATATGCTTCTGTTGAAACCTCTGTTTCCGCGATTCCAGGAACTTCCAGTCCAATAC CTTGACCATTTCTTCCCAAAGCGCAAATTTAAGACTTTACTCTTATTGCTGCTCTATTTATCTTGGTTCTTGCCT TGGTTTTTGGTTTTATTACACTCGCGTTCTTCCGGTTATATCGAAGGTTACGGTCGGCCTCAGACGCTGTCCTGC TCGACGAACTTCTGGGAGGTCGACAATGGATGTGGTATTAACGGAAACGACTGCCGTCCATTTTCTTCATCAACT ATTCCCTTCCGGTGTCCTGCGAACTGCCGTGATACCAAATTACTGGAGCCTTACGTTGTGGGAAATAATACGTAC AACTACCAAGGCCTAGTCATTGGAGGGCCTGGGCCGGATGGCTCCGACCCGGCACTTTACCGTGCGGATAGCTTT ATCTGCCAGGCAGCAATCCATGTCGGTGCAATCTCCAACGATGGCGGATGCGGTGTCGTCAAGCTTGAAGGCGCA GCGCACTCTTTCCCATCAGTCAAGCAACACGGTATTCTCTCTGCCGGGTTCCCATCGACATTCCCGAAGGCTTTC AGCTTTCTCCAGCTATCCTCGCCACAAGCTAGCTGCCCCTCCGATCCACGCTGGACGCTTCTTGGAATCACTGCT GCAGCAGTTGGCATCCTGTGGCTCTTCTGTACTTCACCGCCTGTGCTGTTTTTCAGTACATTCTTCATGGTGTTC TGCCATACGGGACTTGTTGGAGATCCGCCCTCGTATCCTTTCTTGGCCGACCTTGTCTCCAGTCTTCTGTCACGA CTGCTGCCAGCGTCGTTTGTTGTCTACGTACTTTACAAGTTCTGTGCTGCGCCGCTGTTGCAGCCGATATCCTCG CCTATCTACCAGTTGTCAAAGTTGTTCCTTTTCCTACCTCCACTGTTCACTGGAGCCCTGAACAACTATACCTTT GCGCGATTGATTCCATTGCAGCGTCTAACTCCAATGGACATTCAGAAACAACCGGGGGCAAAGTTGGCATTGGCT CTCGTCATCCCAATTGTGATTTCGATTATCCTAAGCCAGGCGTGGCAAATTCGCCAGGGAGGTCTGCTCCCACGG TATTTGAAGATATACGGTACCATGGGTGTCATCATCTTGATTTTGCTTCCCCTTCCTGGGCTTCGCCTTCGAATT CACCATTATATCCTCGCCATTCTCCTCATGCCCGGCACCGCCTTTCCCACCCGGCCCTCGCTTGTCTACCAGGGT CTGCTGCTGGGTCTTTTCATCAATGGAGTTGCGCGGTGGGGCTTCGCCTCAATTATCGAGACTCCGGCAGCCCTA GGAGAGCAAGCGCCACTTGGAGATGGAATCCATGGCTGGTGGGGTGCTACCTATCCTAATATCACGGCCACATCC GTGAATGTCTCCCTTCCAGAGTTGGATTCGAATCACACTTATCGCGGCAATGGTAACATCACATTCTCTCTGTGG GAACATGATCGCATGGCCGACCTAGCGGTCGACGGCGTCTCCCTTCTTCTCAATGATGTAGAGCGCTGGCGCGGC TATCTCGACGAAGACAAGCGCGGGGAATTCACCTGGCATCGCCATGGCCATGATGGCCTGGAGCTACAAACAAAT CCTCGTCTAGTCAATCGTGATTTGGACACTAACATTGAACCTAGATCGGTTCTTTTGGCTGATAGTGACCCTGAT GATGAACCAGAAGACCTATTTTTCCGATTCGCGTTTTTGAGAGGGTCCGAGGCTGGATCCTACAGTCCGACAGGA GTCTGGCTGAGCGATGGCGCGTGGTGGCCCCCTGCGCCTCCCAAGAAATAG |
| Transcript | >Pro_DTO377G3_2|g6383.t1 ATGTTTGGAGAGGGCCGAGAGCAAGCCGCCAGGCTATATGTTCCTCCGCTGCTTGAGGATGACGAGCGTCTGAAC GATCCCGAAGCTTCCGAAGACCTGCCGCCGCCGGACGTTGAGGCAGGCAGCACTCTTCCCGTCTGGTTGCAAGAA TCATCCAAGTCGTTTCGCTGGGGATGGGTGCCGCTACCGCTCCGAAAGGTCGGTCGCGCCACCGTCAATTGGGTC AAGGGTCCCGATCCCCCGCATATGCTTCTGTTGAAACCTCTGTTTCCGCGATTCCAGGAACTTCCAGTCCAATAC CTTGACCATTTCTTCCCAAAGCGCAAATTTAAGACTTTACTCTTATTGCTGCTCTATTTATCTTGGTTCTTGCCT TGGTTTTTGGTTTTATTACACTCGCGTTCTTCCGGTTATATCGAAGGTTACGGTCGGCCTCAGACGCTGTCCTGC TCGACGAACTTCTGGGAGGTCGACAATGGATGTGGTATTAACGGAAACGACTGCCGTCCATTTTCTTCATCAACT ATTCCCTTCCGGTGTCCTGCGAACTGCCGTGATACCAAATTACTGGAGCCTTACGTTGTGGGAAATAATACGTAC AACTACCAAGGCCTAGTCATTGGAGGGCCTGGGCCGGATGGCTCCGACCCGGCACTTTACCGTGCGGATAGCTTT ATCTGCCAGGCAGCAATCCATGTCGGTGCAATCTCCAACGATGGCGGATGCGGTGTCGTCAAGCTTGAAGGCGCA GCGCACTCTTTCCCATCAGTCAAGCAACACGGTATTCTCTCTGCCGGGTTCCCATCGACATTCCCGAAGGCTTTC AGCTTTCTCCAGCTATCCTCGCCACAAGCTAGCTGCCCCTCCGATCCACGCTGGACGCTTCTTGGAATCACTGCT GCAGCAGTTGGCATCCTGTGGCTCTTCTGTACTTCACCGCCTGTGCTGTTTTTCAGTACATTCTTCATGGTGTTC TGCCATACGGGACTTGTTGGAGATCCGCCCTCGTATCCTTTCTTGGCCGACCTTGTCTCCAGTCTTCTGTCACGA CTGCTGCCAGCGTCGTTTGTTGTCTACGTACTTTACAAGTTCTGTGCTGCGCCGCTGTTGCAGCCGATATCCTCG CCTATCTACCAGTTGTCAAAGTTGTTCCTTTTCCTACCTCCACTGTTCACTGGAGCCCTGAACAACTATACCTTT GCGCGATTGATTCCATTGCAGCGTCTAACTCCAATGGACATTCAGAAACAACCGGGGGCAAAGTTGGCATTGGCT CTCGTCATCCCAATTGTGATTTCGATTATCCTAAGCCAGGCGTGGCAAATTCGCCAGGGAGGTCTGCTCCCACGG TATTTGAAGATATACGGTACCATGGGTGTCATCATCTTGATTTTGCTTCCCCTTCCTGGGCTTCGCCTTCGAATT CACCATTATATCCTCGCCATTCTCCTCATGCCCGGCACCGCCTTTCCCACCCGGCCCTCGCTTGTCTACCAGGGT CTGCTGCTGGGTCTTTTCATCAATGGAGTTGCGCGGTGGGGCTTCGCCTCAATTATCGAGACTCCGGCAGCCCTA GGAGAGCAAGCGCCACTTGGAGATGGAATCCATGGCTGGTGGGGTGCTACCTATCCTAATATCACGGCCACATCC GTGAATGTCTCCCTTCCAGAGTTGGATTCGAATCACACTTATCGCGGCAATGGTAACATCACATTCTCTCTGTGG GAACATGATCGCATGGCCGACCTAGCGGTCGACGGCGTCTCCCTTCTTCTCAATGATGTAGAGCGCTGGCGCGGC TATCTCGACGAAGACAAGCGCGGGGAATTCACCTGGCATCGCCATGGCCATGATGGCCTGGAGCTACAAACAAAT CCTCGTCTAGTCAATCGTGATTTGGACACTAACATTGAACCTAGATCGGTTCTTTTGGCTGATAGTGACCCTGAT GATGAACCAGAAGACCTATTTTTCCGATTCGCGTTTTTGAGAGGGTCCGAGGCTGGATCCTACAGTCCGACAGGA GTCTGGCTGAGCGATGGCGCGTGGTGGCCCCCTGCGCCTCCCAAGAAATAG |
| Gene | >Pro_DTO377G3_2|g6383.t1 ATGTTTGGAGAGGGCCGAGAGCAAGCCGCCAGGCTATATGTTCCTCCGCTGCTTGAGGATGACGAGCGTCTGAAC GATCCCGAAGCTTCCGAAGACCTGCCGCCGCCGGACGTTGAGGCAGGCAGCACTCTTCCCGTCTGGTTGCAAGAA TCATCCAAGTCGTTTCGCTGGGGATGGGTGCCGCTACCGCTCCGAAAGGTCGGTCGCGCCACCGTCAATTGGGTC AAGGGTCCCGATCCCCCGCATATGCTTCTGTTGAAACCTCTGTTTCCGCGATTCCAGGAACTTCCAGTCCAATAC CTTGACCATTTCTTCCCAAAGCGCAAATTTAAGACTTTACTCTTATTGCTGCTCTATTTATCTTGGTTCTTGCCT TGGTTTTTGGTTTTATTACACTCGCGTTCTTCCGGTTATATCGAAGGTTACGGTCGGCCTCAGACGCTGTCCTGC TCGACGAACTTCTGGTACGTGCGGAAATGGAAGCGCCATCTAGGTATAAAATCCGCTAACATGTATTTGATTGCT TAGGGAGGTCGACAATGGATGTGGTATTAACGGAAACGACTGCCGTCCATTTTCTTCATCAACTATTCCCTTCCG GTGTCCTGCGAACTGCCGTGATACCAAATTACTGGAGCCTTACGTTGTGGGAAATAATACGTACAACTACCAAGG CCTAGTCATTGGAGGGCCTGGGCCGGATGGCTCCGACCCGGCACTTTACCGTGCGGATAGCTTTATCTGCCAGGC AGCAATCCATGTCGGTGCAATCTCCAACGATGGCGGATGCGGTGTCGTCAAGCTTGAAGGCGCAGCGCACTCTTT CCCATCAGTCAAGCAACACGGTATTCTCTCTGCCGGGTTCCCATCGACATTCCCGAAGGCTTTCAGCTTTCTCCA GCTATCCTCGCCACAAGCTAGCTGCCCCTCCGATCCACGCTGGACGCTTCTTGGAATCACTGCTGCAGCAGTTGG CATCCTGTGGCTCTTCTGTACTTCACCGCCTGTGCTGTTTTTCAGTACATTCTTCATGGTGTTCTGCCATACGGG ACTTGTTGGAGATCCGCCCTCGTATCCTTTCTTGGCCGACCTTGTCTCCAGTCTTCTGTCACGACTGCTGCCAGC GTCGTTTGTTGTCTACGTACTTTACAAGTTCTGTGCTGCGCCGCTGTTGCAGCCGATATCCTCGCCTATCTACCA GTTGTCAAAGTTGTTCCTTTTCCTACCTCCACTGTTCACTGGAGCCCTGAACAACTATACCTTTGCGCGATTGAT TCCATTGCAGCGTCTAACTCCAATGGACATTCAGAAACAACCGGGGGCAAAGTTGGCATTGGCTCTCGTCATCCC AATTGTGATTTCGATTATCCTAAGCCAGGCGTGGCAAATTCGCCAGGGAGGTCTGCTCCCACGGTATTTGAAGAT ATACGGTACCATGGGTGTCATCATCTTGATTTTGCTTCCCCTTCCTGGGCTTCGCCTTCGAATTCACCATTATAT CCTCGCCATTCTCCTCATGCCCGGCACCGCCTTTCCCACCCGGCCCTCGCTTGTCTACCAGGGTCTGCTGCTGGG TCTTTTCATCAATGGAGTTGCGCGGTGGGGCTTCGCCTCAATTATCGAGACTCCGGCAGCCCTAGGAGAGCAAGC GCCACTTGGAGATGGAATCCATGGCTGGTGGGGTGCTACCTATCCTAATATCACGGCCACATCCGTGAATGTCTC CCTTCCAGAGTTGGATTCGAATCACACTTATCGCGGCAATGGTAACATCACATTCTCTCTGTGGGAACATGATCG CATGGCCGACCTAGCGGTCGACGGCGTCTCCCTTCTTCTCAATGATGTAGAGCGCTGGCGCGGCTATCTCGACGA AGACAAGCGCGGGGAATTCACCTGGCATCGCCATGGCCATGATGGCCTGGAGCTACAAACAAATCCTCGTCTAGT CAATCGTGATTTGGACACTAACATTGAACCTAGATCGGTTCTTTTGGCTGATAGTGACCCTGATGATGAACCAGA AGACCTATTTTTCCGATTCGCGTTTTTGAGAGGGTCCGAGGCTGGATCCTACAGTCCGACAGGAGTCTGGCTGAG CGATGGCGCGTGGTGGCCCCCTGCGCCTCCCAAGAAATAG |