© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6370.t1 |
| Gene name | |
| Location | scaffold_17:6239..7972 |
| Strand | + |
| Gene length (bp) | 1733 |
| Transcript length (bp) | 1509 |
| Coding sequence length (bp) | 1509 |
| Protein length (aa) | 503 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01490 | Aa_trans | Transmembrane amino acid transporter protein | 1.5E-92 | 33 | 427 |
| PF03222 | Trp_Tyr_perm | Tryptophan/tyrosine permease family | 2.4E-07 | 37 | 265 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003333 | amino acid transmembrane transport | Yes |
| GO:0071702 | organic substance transport | No |
| GO:0008150 | biological_process | No |
| GO:1905039 | carboxylic acid transmembrane transport | No |
| GO:0006810 | transport | No |
| GO:1903825 | organic acid transmembrane transport | No |
| GO:0009987 | cellular process | No |
| GO:0055085 | transmembrane transport | No |
| GO:0006865 | amino acid transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0015849 | organic acid transport | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 69 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 30 | 52 | 22 |
| 2 | 62 | 84 | 22 |
| 3 | 111 | 133 | 22 |
| 4 | 153 | 175 | 22 |
| 5 | 182 | 204 | 22 |
| 6 | 219 | 238 | 19 |
| 7 | 259 | 281 | 22 |
| 8 | 296 | 318 | 22 |
| 9 | 366 | 388 | 22 |
| 10 | 392 | 414 | 22 |
| 11 | 476 | 498 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 50.45 | 30.21 | 70.69 |
| 5d_25C | Five days - 25 degrees Celsius | 48.42 | 28.87 | 67.96 |
| 7d_25C | Seven days - 25 degrees Celsius | 55.46 | 33.24 | 77.68 |
| 10d_25C | Ten days - 25 degrees Celsius | 59.46 | 35.89 | 83.03 |
| 7d_15C | Seven days - 15 degrees Celsius | 55.32 | 33.20 | 77.44 |
| 7d_30C | Seven days - 30 degrees Celsius | 63.48 | 38.35 | 88.60 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.905625 | no |
| 3d_25C | 7d_25C | 0.756398 | no |
| 3d_25C | 7d_15C | 0.767298 | no |
| 3d_25C | 7d_30C | 0.350603 | no |
| 3d_25C | 10d_25C | 0.533559 | no |
| 5d_25C | 7d_25C | 0.629729 | no |
| 5d_25C | 7d_15C | 0.642895 | no |
| 5d_25C | 7d_30C | 0.251113 | no |
| 5d_25C | 10d_25C | 0.407882 | no |
| 7d_25C | 7d_15C | 0.994236 | no |
| 7d_25C | 7d_30C | 0.628119 | no |
| 7d_25C | 10d_25C | 0.823595 | no |
| 7d_15C | 7d_30C | 0.617647 | no |
| 7d_15C | 10d_25C | 0.816911 | no |
| 7d_30C | 10d_25C | 0.830577 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6370.t1 MEEAALGVGPSGGHQNMLRRRAARARPGDVVGEASWASSVINLVNTIIGAGVLAMPLAISRMGIVLGVCVILWSA VTAGFGLYLQSLCAQYLDRGSASFFALSQITYPNAAVVFDCAIAIKCFGVGVSYLIIIGDLMPGVIQGFVGSEPG YDFLVDRHFWVTFFMLIVIPISYLRRLDSLKYTSIAALVSMAYLVVLVVYKFVQGDTMKDRGPIRVGHWEGAVPT LSSLPVIVFAFTCHQNMFSILNEIGNNSHFRTTAVVIASAGSAAATYILVAITGYLSFGNSVGGNIVGMYPPGVY ATIGRAAIVMLVVFSYPLQCHPCRASVDAVLKWRPRAQVAGAESSPNRHPLLGPRGNRTPEPMSDLRFSIITTTI LILSYLVAMTVSSLESVLAYVGSTGSTSISFILPGLFYYKISSPDSPTHQGLMKEDDEAEDDLSGDDDGDDGEGS LARPLTESGLLHRGTRHWRKALLRRLSLALALYGLVVMVVCLVTNTFFKISH* |
| Coding | >Pro_DTO377G3_2|g6370.t1 ATGGAGGAGGCCGCGCTCGGGGTTGGTCCATCCGGGGGACATCAGAATATGCTGCGCAGACGTGCAGCCCGTGCA AGACCTGGAGATGTCGTGGGGGAGGCCAGTTGGGCCAGCAGTGTGATCAACCTGGTTAATACCATCATCGGTGCC GGTGTGCTGGCGATGCCCCTAGCCATCTCCCGTATGGGAATCGTCCTCGGCGTCTGCGTCATTCTGTGGTCTGCG GTCACCGCAGGATTCGGCCTCTACCTGCAATCACTATGCGCGCAATACCTAGACCGTGGAAGCGCCTCATTTTTT GCTCTATCGCAAATAACATACCCCAATGCGGCTGTGGTCTTTGACTGTGCGATTGCGATCAAATGTTTCGGAGTC GGCGTGAGCTATCTCATCATCATTGGAGATCTTATGCCGGGAGTGATACAGGGCTTTGTCGGTAGCGAGCCTGGA TACGATTTTCTGGTGGACCGCCACTTCTGGGTTACATTTTTCATGCTGATCGTGATTCCTATTTCCTACCTGCGC CGTTTGGATTCTTTGAAATATACGAGTATCGCGGCCTTGGTGTCCATGGCCTATTTGGTTGTCTTGGTTGTGTAT AAGTTTGTTCAAGGAGACACGATGAAAGATCGGGGCCCGATTCGCGTGGGCCATTGGGAGGGCGCAGTTCCGACT CTCAGCAGTCTGCCAGTTATTGTCTTTGCATTTACTTGCCATCAAAATATGTTCTCCATCCTCAACGAAATCGGC AATAACAGCCATTTCCGCACAACCGCCGTTGTTATTGCCAGCGCCGGTAGTGCAGCTGCAACCTACATCCTCGTT GCCATCACCGGGTACTTATCCTTTGGCAACAGCGTAGGCGGGAATATCGTCGGCATGTACCCACCGGGCGTGTAC GCAACGATCGGCCGCGCCGCAATCGTCATGCTAGTAGTCTTCTCTTACCCACTACAATGCCACCCATGCCGCGCC TCAGTCGATGCCGTCCTAAAATGGCGTCCCCGAGCACAAGTCGCTGGCGCAGAGAGCTCTCCAAACCGACACCCA CTTCTAGGCCCGCGCGGAAACCGCACGCCAGAGCCAATGAGCGACCTTCGCTTCTCCATTATCACAACCACCATC TTGATTCTGAGCTACCTAGTCGCCATGACCGTGTCCTCCCTTGAATCCGTGCTGGCATATGTCGGGAGCACTGGC AGCACGAGCATCAGCTTCATTCTTCCGGGCTTGTTTTACTACAAGATCTCATCGCCCGACTCGCCTACCCACCAG GGCTTAATGAAAGAGGACGATGAGGCGGAGGATGATCTCTCAGGAGATGACGACGGCGACGACGGCGAGGGTTCC CTCGCTCGCCCATTGACAGAGAGTGGCCTTTTGCACCGTGGCACCCGCCACTGGCGCAAGGCGCTGCTTCGCCGA CTCAGCCTGGCATTGGCTCTCTACGGCCTCGTCGTTATGGTGGTGTGTCTGGTTACGAACACCTTCTTCAAAATC TCACATTAA |
| Transcript | >Pro_DTO377G3_2|g6370.t1 ATGGAGGAGGCCGCGCTCGGGGTTGGTCCATCCGGGGGACATCAGAATATGCTGCGCAGACGTGCAGCCCGTGCA AGACCTGGAGATGTCGTGGGGGAGGCCAGTTGGGCCAGCAGTGTGATCAACCTGGTTAATACCATCATCGGTGCC GGTGTGCTGGCGATGCCCCTAGCCATCTCCCGTATGGGAATCGTCCTCGGCGTCTGCGTCATTCTGTGGTCTGCG GTCACCGCAGGATTCGGCCTCTACCTGCAATCACTATGCGCGCAATACCTAGACCGTGGAAGCGCCTCATTTTTT GCTCTATCGCAAATAACATACCCCAATGCGGCTGTGGTCTTTGACTGTGCGATTGCGATCAAATGTTTCGGAGTC GGCGTGAGCTATCTCATCATCATTGGAGATCTTATGCCGGGAGTGATACAGGGCTTTGTCGGTAGCGAGCCTGGA TACGATTTTCTGGTGGACCGCCACTTCTGGGTTACATTTTTCATGCTGATCGTGATTCCTATTTCCTACCTGCGC CGTTTGGATTCTTTGAAATATACGAGTATCGCGGCCTTGGTGTCCATGGCCTATTTGGTTGTCTTGGTTGTGTAT AAGTTTGTTCAAGGAGACACGATGAAAGATCGGGGCCCGATTCGCGTGGGCCATTGGGAGGGCGCAGTTCCGACT CTCAGCAGTCTGCCAGTTATTGTCTTTGCATTTACTTGCCATCAAAATATGTTCTCCATCCTCAACGAAATCGGC AATAACAGCCATTTCCGCACAACCGCCGTTGTTATTGCCAGCGCCGGTAGTGCAGCTGCAACCTACATCCTCGTT GCCATCACCGGGTACTTATCCTTTGGCAACAGCGTAGGCGGGAATATCGTCGGCATGTACCCACCGGGCGTGTAC GCAACGATCGGCCGCGCCGCAATCGTCATGCTAGTAGTCTTCTCTTACCCACTACAATGCCACCCATGCCGCGCC TCAGTCGATGCCGTCCTAAAATGGCGTCCCCGAGCACAAGTCGCTGGCGCAGAGAGCTCTCCAAACCGACACCCA CTTCTAGGCCCGCGCGGAAACCGCACGCCAGAGCCAATGAGCGACCTTCGCTTCTCCATTATCACAACCACCATC TTGATTCTGAGCTACCTAGTCGCCATGACCGTGTCCTCCCTTGAATCCGTGCTGGCATATGTCGGGAGCACTGGC AGCACGAGCATCAGCTTCATTCTTCCGGGCTTGTTTTACTACAAGATCTCATCGCCCGACTCGCCTACCCACCAG GGCTTAATGAAAGAGGACGATGAGGCGGAGGATGATCTCTCAGGAGATGACGACGGCGACGACGGCGAGGGTTCC CTCGCTCGCCCATTGACAGAGAGTGGCCTTTTGCACCGTGGCACCCGCCACTGGCGCAAGGCGCTGCTTCGCCGA CTCAGCCTGGCATTGGCTCTCTACGGCCTCGTCGTTATGGTGGTGTGTCTGGTTACGAACACCTTCTTCAAAATC TCACATTAA |
| Gene | >Pro_DTO377G3_2|g6370.t1 ATGGAGGAGGCCGCGCTCGGGGTTGGTCCATCCGGGGGACATCAGAATATGCTGCGCAGGTAGGCCGGAGCCCAA TATCTTGATGTTGATGGTGGCTAATTTGGATTCCATTAGACGTGCAGCCCGTGCAAGACCTGGAGATGTCGTGGG GGAGGCCAGTTGGGCCAGCAGTGTGATCAACCTGGTTAATACCAGTAAGTGCGAGGAAGCGCACCATACAAGAGT GCTCCGAATTCTGATACAATTTCTCCTGCAGTCATCGGTGCCGGTGTGCTGGCGATGCCCCTAGCCATCTCCCGT ATGGGAATCGTCCTCGGCGTCTGCGTCATTCTGTGGTCTGCGGTCACCGCAGGATTCGGCCTCTACCTGCAATCA CTATGCGCGCAATACCTAGACCGTGGAAGCGCCTCATTTTTTGCTCTATCGCAAATAACATACCCCAATGCGGCT GTGGTCTTTGACTGTGCGATTGCGATCAAATGTTTCGGAGTCGGCGTGAGCTATCTCATCATCATTGGAGATCTT ATGCCGGGAGTGATACAGGGCTTTGTCGGTAGCGAGCCTGGATACGATTTTCTGGTGGACCGCCACTTCTGGGTT ACATTTTTCATGTGCGTAGCCTCGTGCATTTTGTCTAAACGAGGGGAAGTGCTGACCATTTGACTTTAGGCTGAT CGTGATTCCTATTTCCTACCTGCGCCGTTTGGATTCTTTGAAATATACGAGTATCGCGGCCTTGGTGTCCATGGC CTATTTGGTTGTCTTGGTTGTGTATAAGTTTGTTCAAGGAGACACGATGAAAGATCGGGGCCCGATTCGCGTGGG CCATTGGGAGGGCGCAGTTCCGACTCTCAGCAGTCTGCCAGTTATTGTCTTTGCATTTACTTGCCATCAAAATGT ACTTTCCCAAGTCGTGACTCGTCGGTTCTTTCTAACAAGCATTTTAGATGTTCTCCATCCTCAACGAAATCGGCA ATAACAGCCATTTCCGCACAACCGCCGTTGTTATTGCCAGCGCCGGTAGTGCAGCTGCAACCTACATCCTCGTTG CCATCACCGGGTACTTATCCTTTGGCAACAGCGTAGGCGGGAATATCGTCGGCATGTACCCACCGGGCGTGTACG CAACGATCGGCCGCGCCGCAATCGTCATGCTAGTAGTCTTCTCTTACCCACTACAATGCCACCCATGCCGCGCCT CAGTCGATGCCGTCCTAAAATGGCGTCCCCGAGCACAAGTCGCTGGCGCAGAGAGCTCTCCAAACCGACACCCAC TTCTAGGCCCGCGCGGAAACCGCACGCCAGAGCCAATGAGCGACCTTCGCTTCTCCATTATCACAACCACCATCT TGATTCTGAGCTACCTAGTCGCCATGACCGTGTCCTCCCTTGAATCCGTGCTGGCATATGTCGGGAGCACTGGCA GCACGAGCATCAGCTTCATTCTTCCGGGCTTGTTTTACTACAAGATCTCATCGCCCGACTCGCCTACCCACCAGG GCTTAATGAAAGAGGACGATGAGGCGGAGGATGATCTCTCAGGAGATGACGACGGCGACGACGGCGAGGGTTCCC TCGCTCGCCCATTGACAGAGAGTGGCCTTTTGCACCGTGGCACCCGCCACTGGCGCAAGGCGCTGCTTCGCCGAC TCAGCCTGGCATTGGCTCTCTACGGCCTCGTCGTTATGGTGGTGTGTCTGGTTACGAACACCTTCTTCAAAATCT CACATTAA |