© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6365.t1 |
| Gene name | |
| Location | scaffold_16:611865..613344 |
| Strand | + |
| Gene length (bp) | 1479 |
| Transcript length (bp) | 1260 |
| Coding sequence length (bp) | 1260 |
| Protein length (aa) | 420 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12697 | Abhydrolase_6 | Alpha/beta hydrolase family | 7.5E-09 | 130 | 355 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 37 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 34 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 45.42 | 26.25 | 64.58 |
| 5d_25C | Five days - 25 degrees Celsius | 49.92 | 29.27 | 70.57 |
| 7d_25C | Seven days - 25 degrees Celsius | 51.22 | 30.07 | 72.37 |
| 10d_25C | Ten days - 25 degrees Celsius | 44.48 | 25.66 | 63.29 |
| 7d_15C | Seven days - 15 degrees Celsius | 44.02 | 25.14 | 62.89 |
| 7d_30C | Seven days - 30 degrees Celsius | 35.75 | 19.70 | 51.80 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.762283 | no |
| 3d_25C | 7d_25C | 0.686838 | no |
| 3d_25C | 7d_15C | 0.932636 | no |
| 3d_25C | 7d_30C | 0.374648 | no |
| 3d_25C | 10d_25C | 0.956705 | no |
| 5d_25C | 7d_25C | 0.941171 | no |
| 5d_25C | 7d_15C | 0.674732 | no |
| 5d_25C | 7d_30C | 0.175546 | no |
| 5d_25C | 10d_25C | 0.693798 | no |
| 7d_25C | 7d_15C | 0.599037 | no |
| 7d_25C | 7d_30C | 0.141897 | no |
| 7d_25C | 10d_25C | 0.621381 | no |
| 7d_15C | 7d_30C | 0.464178 | no |
| 7d_15C | 10d_25C | 0.978492 | no |
| 7d_30C | 10d_25C | 0.429622 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6365.t1 MVELKPIFRKAYWSLAAGGLLYVLCILSLTFPEVQRSVLYANKINPSLWQDVNQVEQFGFLRTQVQPFHLVTPDN ETIYGWHLMPLHLCLEFEKELMENPSTGPAEDYTKTVAYKLLANDPNARVVVSFHGNAAHLGSAQRPATYNSMLS LSTPSNPVHVFAIDYRGFGVSTGNPTEEGLITDGVSLINFLTAGPLEVPTSRIVIVGQSLGTAVTTAVAERFAFG SSDPAAIQPAIKNADPFAGVVLLASFSSLANLIESYSFKGLTPPMLSPIMGYPRSQQWLLSHIVDHWDTAGRLAR LTGVNTTSLNAVDMGYIDKSLDLTIVHAFDDAEIPWYEGRRVWEAATGRHVKGAPGAMTYLKSEDGNPSEVKIWK NEISNEDGSEVVKTVRWERIRYGGHNRVASGSVAGIAVMRAFEQ* |
| Coding | >Pro_DTO377G3_2|g6365.t1 ATGGTTGAGCTTAAGCCTATTTTTAGGAAGGCTTACTGGTCCCTTGCAGCAGGTGGCCTGCTATACGTGCTGTGT ATCCTCTCCTTGACCTTCCCAGAGGTTCAACGTTCTGTTCTTTATGCCAACAAGATCAATCCCAGCTTGTGGCAG GATGTCAACCAAGTCGAACAGTTTGGATTTTTAAGAACCCAAGTCCAACCGTTTCATTTGGTTACGCCCGACAAT GAAACCATTTACGGCTGGCATTTGATGCCCTTGCATCTTTGCCTGGAGTTCGAAAAGGAATTAATGGAGAATCCC TCTACGGGCCCAGCGGAGGACTACACGAAGACAGTTGCCTACAAGCTTCTCGCCAATGACCCCAATGCACGAGTT GTGGTTAGCTTCCACGGAAATGCGGCGCATTTGGGTTCCGCTCAACGCCCTGCCACTTACAACTCGATGCTAAGC CTATCTACCCCATCAAACCCAGTCCACGTCTTTGCAATTGACTATCGCGGCTTTGGTGTTAGCACTGGAAATCCC ACCGAGGAAGGCCTTATCACGGATGGTGTGTCCCTCATTAACTTCCTTACCGCAGGGCCATTAGAGGTTCCCACC TCCCGCATCGTCATCGTGGGCCAAAGTCTTGGAACTGCAGTAACAACTGCAGTGGCAGAGCGTTTTGCATTCGGA TCATCTGACCCAGCAGCTATCCAACCGGCTATCAAGAACGCCGATCCATTTGCTGGCGTGGTCCTATTGGCATCT TTCAGCAGCCTAGCCAATCTCATCGAGTCCTACAGCTTCAAAGGCCTCACCCCGCCTATGCTCTCTCCTATCATG GGATATCCTCGATCTCAACAGTGGCTGTTGAGCCACATTGTGGACCACTGGGACACGGCTGGGAGACTGGCGCGT CTCACCGGCGTTAATACTACTTCCTTGAACGCTGTAGATATGGGCTACATTGATAAAAGCCTTGATCTCACGATA GTTCATGCTTTTGATGATGCTGAAATTCCCTGGTATGAAGGACGCCGCGTTTGGGAGGCTGCGACGGGCAGACAT GTCAAGGGTGCTCCTGGTGCTATGACGTATCTCAAATCCGAGGATGGCAACCCTAGCGAGGTCAAGATCTGGAAG AATGAGATCAGCAATGAAGATGGTAGTGAGGTTGTCAAAACAGTCAGATGGGAACGGATTCGATACGGTGGTCAC AATCGCGTTGCATCAGGCTCAGTGGCTGGTATCGCTGTTATGAGGGCTTTTGAGCAGTAA |
| Transcript | >Pro_DTO377G3_2|g6365.t1 ATGGTTGAGCTTAAGCCTATTTTTAGGAAGGCTTACTGGTCCCTTGCAGCAGGTGGCCTGCTATACGTGCTGTGT ATCCTCTCCTTGACCTTCCCAGAGGTTCAACGTTCTGTTCTTTATGCCAACAAGATCAATCCCAGCTTGTGGCAG GATGTCAACCAAGTCGAACAGTTTGGATTTTTAAGAACCCAAGTCCAACCGTTTCATTTGGTTACGCCCGACAAT GAAACCATTTACGGCTGGCATTTGATGCCCTTGCATCTTTGCCTGGAGTTCGAAAAGGAATTAATGGAGAATCCC TCTACGGGCCCAGCGGAGGACTACACGAAGACAGTTGCCTACAAGCTTCTCGCCAATGACCCCAATGCACGAGTT GTGGTTAGCTTCCACGGAAATGCGGCGCATTTGGGTTCCGCTCAACGCCCTGCCACTTACAACTCGATGCTAAGC CTATCTACCCCATCAAACCCAGTCCACGTCTTTGCAATTGACTATCGCGGCTTTGGTGTTAGCACTGGAAATCCC ACCGAGGAAGGCCTTATCACGGATGGTGTGTCCCTCATTAACTTCCTTACCGCAGGGCCATTAGAGGTTCCCACC TCCCGCATCGTCATCGTGGGCCAAAGTCTTGGAACTGCAGTAACAACTGCAGTGGCAGAGCGTTTTGCATTCGGA TCATCTGACCCAGCAGCTATCCAACCGGCTATCAAGAACGCCGATCCATTTGCTGGCGTGGTCCTATTGGCATCT TTCAGCAGCCTAGCCAATCTCATCGAGTCCTACAGCTTCAAAGGCCTCACCCCGCCTATGCTCTCTCCTATCATG GGATATCCTCGATCTCAACAGTGGCTGTTGAGCCACATTGTGGACCACTGGGACACGGCTGGGAGACTGGCGCGT CTCACCGGCGTTAATACTACTTCCTTGAACGCTGTAGATATGGGCTACATTGATAAAAGCCTTGATCTCACGATA GTTCATGCTTTTGATGATGCTGAAATTCCCTGGTATGAAGGACGCCGCGTTTGGGAGGCTGCGACGGGCAGACAT GTCAAGGGTGCTCCTGGTGCTATGACGTATCTCAAATCCGAGGATGGCAACCCTAGCGAGGTCAAGATCTGGAAG AATGAGATCAGCAATGAAGATGGTAGTGAGGTTGTCAAAACAGTCAGATGGGAACGGATTCGATACGGTGGTCAC AATCGCGTTGCATCAGGCTCAGTGGCTGGTATCGCTGTTATGAGGGCTTTTGAGCAGTAA |
| Gene | >Pro_DTO377G3_2|g6365.t1 ATGGTTGAGCTTAAGCCTATTTTTAGGAAGGCTTACTGGTCCCTTGCAGCAGGTGGCCTGCTATACGTGCTGTGT ATCCTCTCCTTGACCTTCCCAGAGGTTCAACGTTCGTATGTATCTAGTTCCCCCCGGGCCTACCTCCAGAGTGAG CTAATATAGATAACACAGTGTTCTTTATGCCAACAAGATCAATCCCAGCTTGTGGCAGGATGTCAACCAAGTCGA ACAGTTTGGATTTTTAAGTATGGCATCCCTAGGGGAACAACGGAAGTATGTTTGCTAACCGATCCCCAAAGGAAC CCAAGTCCAACCGTTTCATTTGGTTACGCCCGACAATGAAACCATTTACGGCTGGCATTTGATGCCCTTGCATCT TTGCCTGGAGTTCGAAAAGGAATTAATGGAGAATCCCTCTACGGGCCCAGCGGAGGACTACACGAAGACAGTTGC CTACAAGCTTCTCGCCAATGACCCCAATGCACGAGTTGTGGTTAGCTGTAAGTGATAGACAACCTAGATTCCGAC TGCAAAAAACTGACAGGCAAGTCCACGGAAATGCGGCGCATTTGGGTTCCGCTCAACGCCCTGCCACTTACAACT CGATGCTAAGCCTATCTACCCCATCAAACCCAGTCCACGTCTTTGCAATTGACTATCGCGGCTTTGGTGTTAGCA CTGGAAATCCCACCGAGGAAGGCCTTATCACGGATGGTGTGTCCCTCATTAACTTCCTTACCGCAGGGCCATTAG AGGTTCCCACCTCCCGCATCGTCATCGTGGGCCAAAGTCTTGGAACTGCAGTAACAACTGCAGTGGCAGAGCGTT TTGCATTCGGATCATCTGACCCAGCAGCTATCCAACCGGCTATCAAGAACGCCGATCCATTTGCTGGCGTGGTCC TATTGGCATCTTTCAGCAGCCTAGCCAATCTCATCGAGTCCTACAGCTTCAAAGGCCTCACCCCGCCTATGCTCT CTCCTATCATGGGATATCCTCGATCTCAACAGTGGCTGTTGAGCCACATTGTGGACCACTGGGACACGGCTGGGA GACTGGCGCGTCTCACCGGCGTTAATACTACTTCCTTGAACGCTGTAGATATGGGCTACATTGATAAAAGCCTTG ATCTCACGATAGTTCATGCTTTTGATGATGCTGAAATTCCCTGGTATGAAGGACGCCGCGTTTGGGAGGCTGCGA CGGGCAGACATGTCAAGGGTGCTCCTGGTGCTATGACGTATCTCAAATCCGAGGATGGCAACCCTAGCGAGGTCA AGATCTGGAAGAATGAGATCAGCAATGAAGATGGTAGTGAGGTTGTCAAAACAGTCAGATGGGAACGGATTCGAT ACGGTGGTATGTTGAAGCAACACCCTCTGGCTATAAATTCGACAGACTGACCATAATCTTTTAGGTCACAATCGC GTTGCATCAGGCTCAGTGGCTGGTATCGCTGTTATGAGGGCTTTTGAGCAGTAA |