© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6351.t1 |
| Gene name | |
| Location | scaffold_16:578048..578777 |
| Strand | - |
| Gene length (bp) | 729 |
| Transcript length (bp) | 540 |
| Coding sequence length (bp) | 540 |
| Protein length (aa) | 180 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04588 | HIG_1_N | Hypoxia induced protein conserved region | 4.1E-27 | 32 | 83 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 70 | 87 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 172.78 | 102.35 | 243.21 |
| 5d_25C | Five days - 25 degrees Celsius | 274.02 | 166.79 | 381.25 |
| 7d_25C | Seven days - 25 degrees Celsius | 289.13 | 175.90 | 402.36 |
| 10d_25C | Ten days - 25 degrees Celsius | 385.14 | 234.85 | 535.42 |
| 7d_15C | Seven days - 15 degrees Celsius | 262.82 | 157.44 | 368.19 |
| 7d_30C | Seven days - 30 degrees Celsius | 286.18 | 171.01 | 401.35 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.029092 | yes |
| 3d_25C | 7d_25C | 0.012904 | yes |
| 3d_25C | 7d_15C | 0.053498 | no |
| 3d_25C | 7d_30C | 0.015558 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.866931 | no |
| 5d_25C | 7d_15C | 0.902659 | no |
| 5d_25C | 7d_30C | 0.895879 | no |
| 5d_25C | 10d_25C | 0.124773 | no |
| 7d_25C | 7d_15C | 0.750237 | no |
| 7d_25C | 7d_30C | 0.976919 | no |
| 7d_25C | 10d_25C | 0.208064 | no |
| 7d_15C | 7d_30C | 0.781589 | no |
| 7d_15C | 10d_25C | 0.081084 | no |
| 7d_30C | 10d_25C | 0.193405 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6351.t1 MNREPVPSSFDEENPQFTEETGVQKFKRRLKEEPLVPLGCAATCYALYRAYRSMKIGDSVEMNRMFRARIYAQAF TLVALVAGGMYFKTERQQRREFDQAVELRKKQEKRDAWLRELEIRDKEDREWRERHAAIDAAAKEAGNKPAPRSE SEAARSSIEPADEKSIGVMDAVRALISRN* |
| Coding | >Pro_DTO377G3_2|g6351.t1 ATGAACCGGGAACCTGTTCCTTCGTCTTTTGACGAGGAGAACCCTCAATTTACAGAAGAGACCGGCGTTCAAAAA TTCAAACGACGTCTCAAGGAAGAACCCCTGGTTCCACTTGGATGCGCCGCAACATGTTATGCCCTCTACCGCGCC TACCGGTCGATGAAAATCGGTGACTCGGTTGAAATGAACCGAATGTTCCGAGCCCGTATCTACGCACAAGCCTTC ACACTAGTCGCCCTAGTCGCCGGCGGAATGTACTTCAAGACGGAGCGGCAACAGCGCCGGGAATTCGACCAAGCA GTGGAACTTCGGAAGAAGCAAGAAAAGCGTGATGCGTGGTTGCGCGAGCTAGAGATTCGTGATAAGGAGGATCGC GAGTGGAGGGAGCGTCACGCTGCTATTGACGCTGCGGCCAAGGAGGCCGGGAATAAACCGGCGCCTCGTTCTGAG TCTGAAGCGGCACGGTCATCGATCGAGCCTGCGGATGAGAAGTCTATTGGGGTTATGGATGCCGTCAGGGCTCTT ATCTCGCGGAACTGA |
| Transcript | >Pro_DTO377G3_2|g6351.t1 ATGAACCGGGAACCTGTTCCTTCGTCTTTTGACGAGGAGAACCCTCAATTTACAGAAGAGACCGGCGTTCAAAAA TTCAAACGACGTCTCAAGGAAGAACCCCTGGTTCCACTTGGATGCGCCGCAACATGTTATGCCCTCTACCGCGCC TACCGGTCGATGAAAATCGGTGACTCGGTTGAAATGAACCGAATGTTCCGAGCCCGTATCTACGCACAAGCCTTC ACACTAGTCGCCCTAGTCGCCGGCGGAATGTACTTCAAGACGGAGCGGCAACAGCGCCGGGAATTCGACCAAGCA GTGGAACTTCGGAAGAAGCAAGAAAAGCGTGATGCGTGGTTGCGCGAGCTAGAGATTCGTGATAAGGAGGATCGC GAGTGGAGGGAGCGTCACGCTGCTATTGACGCTGCGGCCAAGGAGGCCGGGAATAAACCGGCGCCTCGTTCTGAG TCTGAAGCGGCACGGTCATCGATCGAGCCTGCGGATGAGAAGTCTATTGGGGTTATGGATGCCGTCAGGGCTCTT ATCTCGCGGAACTGA |
| Gene | >Pro_DTO377G3_2|g6351.t1 ATGAACCGGGAACCTGTTCCTTCGTCTTTTGACGAGGAGAACCCGTATGTATCACACATTAGCCGCGTGCTCCGC AAGCGGAACCCGACAATGCCGCAGAGGAAGCGAAGGGAAGGCTCGTCTGCTAACACTCGGTCTCGGACAGTCAAT TTACAGAAGAGACCGGCGTTCAAAAATTCAAACGACGTCTCAAGGAAGAACCCCTGGTTCCACTTGGTACGAAAT CCATCTGCACAAGCCCTCATCTTGACTTTGGAATTTCCCTCCCAACATTGAAAACCAAAACTAATACATACTGCC ACAGGATGCGCCGCAACATGTTATGCCCTCTACCGCGCCTACCGGTCGATGAAAATCGGTGACTCGGTTGAAATG AACCGAATGTTCCGAGCCCGTATCTACGCACAAGCCTTCACACTAGTCGCCCTAGTCGCCGGCGGAATGTACTTC AAGACGGAGCGGCAACAGCGCCGGGAATTCGACCAAGCAGTGGAACTTCGGAAGAAGCAAGAAAAGCGTGATGCG TGGTTGCGCGAGCTAGAGATTCGTGATAAGGAGGATCGCGAGTGGAGGGAGCGTCACGCTGCTATTGACGCTGCG GCCAAGGAGGCCGGGAATAAACCGGCGCCTCGTTCTGAGTCTGAAGCGGCACGGTCATCGATCGAGCCTGCGGAT GAGAAGTCTATTGGGGTTATGGATGCCGTCAGGGCTCTTATCTCGCGGAACTGA |