© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g635.t1 |
| Gene name | |
| Location | scaffold_01:1630370..1632066 |
| Strand | + |
| Gene length (bp) | 1696 |
| Transcript length (bp) | 1617 |
| Coding sequence length (bp) | 1617 |
| Protein length (aa) | 539 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00628 | PHD | PHD-finger | 3.9E-10 | 46 | 90 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 61.62 | 37.40 | 85.84 |
| 5d_25C | Five days - 25 degrees Celsius | 80.67 | 49.50 | 111.83 |
| 7d_25C | Seven days - 25 degrees Celsius | 92.44 | 56.76 | 128.12 |
| 10d_25C | Ten days - 25 degrees Celsius | 140.64 | 85.53 | 195.75 |
| 7d_15C | Seven days - 15 degrees Celsius | 78.21 | 47.98 | 108.44 |
| 7d_30C | Seven days - 30 degrees Celsius | 92.98 | 57.08 | 128.87 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.238123 | no |
| 3d_25C | 7d_25C | 0.052958 | no |
| 3d_25C | 7d_15C | 0.309428 | no |
| 3d_25C | 7d_30C | 0.047513 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.601955 | no |
| 5d_25C | 7d_15C | 0.927655 | no |
| 5d_25C | 7d_30C | 0.584389 | no |
| 5d_25C | 10d_25C | 0.004045 | yes |
| 7d_25C | 7d_15C | 0.503362 | no |
| 7d_25C | 7d_30C | 0.986318 | no |
| 7d_25C | 10d_25C | 0.041216 | yes |
| 7d_15C | 7d_30C | 0.487538 | no |
| 7d_15C | 10d_25C | 0.001804 | yes |
| 7d_30C | 10d_25C | 0.045957 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g635.t1 MVELSDSVGGTVTSSYAVQDRTQVAEVDPSMIIEYVEDDLIDFQPCTICGQADNEDVLLLCDGCDGPSHIYCLGL TEIPSGSWYCQQCEELRAQGPAPEVSARPSRAIEQRSRRTRAQQRRLQNRTQTNSLHWARVWQSVWDHLNLDLDF PFDDDRSAERALQQRRREEANQREFQAWQRRFEVAERQGGGSRFRDTASLFDLDHARPSRPRVPRVPTPEPESLE EMRAWNAFERAREIENNPSAARKRKEPTMSPSPEPTEPERKLKRPRTRRPQELAARAQQTQNGESSRAGSSIVRP SSDNSTGPSFLSSLLKEVEDAPNHSYGPSASTSVGPTDHPSPGLSSPSISPASSRYSSPVLSATPPPFSRSRPIS PFQLSSPAQPSSPPFSPEVSLSGSPSSNGAKEDKPQRQADRPRSRIPQRALCFGASRSPDSSPTRAGPSLALKAD IQKMVGTGLKPHYKKKTISKEQYTNINRSISRMLYERVGDKETLEPDERTNLETEAKHEVQNTIDALVVKSKEKQ KQRMVATDTNGDL* |
| Coding | >Pro_DTO377G3_2|g635.t1 ATGGTGGAGTTGAGCGATAGTGTCGGAGGAACTGTTACTTCATCCTACGCTGTTCAGGACCGAACTCAAGTGGCC GAAGTTGACCCTTCTATGATTATTGAATATGTGGAGGATGACTTGATCGATTTCCAACCATGTACAATTTGCGGA CAAGCCGATAACGAGGATGTTCTCCTTTTGTGCGACGGATGTGATGGGCCTTCTCATATATACTGCTTAGGTTTG ACCGAGATCCCCTCAGGGTCATGGTACTGCCAACAATGTGAGGAGCTACGTGCTCAGGGACCTGCTCCCGAGGTA TCAGCACGGCCGTCGCGGGCGATCGAGCAGCGGAGTCGGCGAACTAGGGCCCAGCAGAGACGACTACAGAATCGG ACTCAGACGAATTCTCTACACTGGGCACGAGTCTGGCAATCTGTCTGGGATCATCTGAATCTCGATCTTGATTTC CCTTTCGATGACGATCGATCTGCCGAACGCGCGCTGCAACAACGTCGTCGCGAGGAGGCCAACCAGCGCGAATTT CAAGCCTGGCAACGCCGCTTTGAAGTCGCTGAGCGACAAGGTGGTGGCAGTCGGTTTCGCGATACAGCATCCCTG TTCGATCTTGACCATGCCCGACCATCCCGACCTCGGGTTCCTCGAGTTCCGACACCAGAGCCCGAGTCGCTGGAG GAGATGCGGGCTTGGAACGCCTTCGAGAGGGCGCGGGAGATCGAAAACAACCCGAGTGCAGCCAGGAAGCGCAAA GAGCCAACCATGTCGCCGTCCCCCGAGCCCACAGAACCCGAGCGCAAGTTGAAGCGTCCTCGAACGAGGAGGCCA CAGGAGCTCGCGGCTCGCGCACAGCAAACTCAAAATGGGGAATCATCCAGAGCTGGGAGCTCCATTGTACGACCG AGCAGTGATAATTCCACCGGGCCAAGCTTCCTATCGTCGCTATTGAAGGAAGTCGAAGACGCACCGAATCATTCA TATGGACCTTCAGCTTCGACATCTGTCGGTCCTACCGACCATCCATCTCCTGGTTTATCTTCTCCCTCCATCTCT CCCGCCTCATCTCGTTACTCCTCCCCTGTCCTCTCGGCTACACCACCACCTTTCTCGCGAAGCCGCCCCATCTCC CCTTTTCAACTATCATCCCCCGCCCAACCCTCATCTCCTCCTTTCTCGCCCGAAGTGTCCCTATCGGGTAGTCCG TCGTCAAATGGTGCCAAAGAAGACAAACCACAACGGCAAGCCGATCGTCCTCGCTCCCGCATCCCCCAACGAGCA CTGTGTTTCGGGGCATCCCGCTCACCTGACTCATCTCCCACTCGAGCTGGTCCATCCCTGGCCCTCAAAGCCGAT ATCCAGAAAATGGTGGGCACTGGGTTAAAACCTCACTACAAGAAAAAGACCATCTCGAAAGAGCAATATACGAAC ATCAACCGATCTATCTCTCGCATGCTCTACGAGCGGGTCGGGGACAAGGAAACGCTTGAGCCAGATGAACGCACC AACCTCGAAACAGAGGCCAAACACGAAGTGCAGAATACAATTGACGCACTGGTGGTGAAGAGCAAAGAGAAACAG AAACAGCGTATGGTGGCGACCGACACAAACGGTGATCTATAA |
| Transcript | >Pro_DTO377G3_2|g635.t1 ATGGTGGAGTTGAGCGATAGTGTCGGAGGAACTGTTACTTCATCCTACGCTGTTCAGGACCGAACTCAAGTGGCC GAAGTTGACCCTTCTATGATTATTGAATATGTGGAGGATGACTTGATCGATTTCCAACCATGTACAATTTGCGGA CAAGCCGATAACGAGGATGTTCTCCTTTTGTGCGACGGATGTGATGGGCCTTCTCATATATACTGCTTAGGTTTG ACCGAGATCCCCTCAGGGTCATGGTACTGCCAACAATGTGAGGAGCTACGTGCTCAGGGACCTGCTCCCGAGGTA TCAGCACGGCCGTCGCGGGCGATCGAGCAGCGGAGTCGGCGAACTAGGGCCCAGCAGAGACGACTACAGAATCGG ACTCAGACGAATTCTCTACACTGGGCACGAGTCTGGCAATCTGTCTGGGATCATCTGAATCTCGATCTTGATTTC CCTTTCGATGACGATCGATCTGCCGAACGCGCGCTGCAACAACGTCGTCGCGAGGAGGCCAACCAGCGCGAATTT CAAGCCTGGCAACGCCGCTTTGAAGTCGCTGAGCGACAAGGTGGTGGCAGTCGGTTTCGCGATACAGCATCCCTG TTCGATCTTGACCATGCCCGACCATCCCGACCTCGGGTTCCTCGAGTTCCGACACCAGAGCCCGAGTCGCTGGAG GAGATGCGGGCTTGGAACGCCTTCGAGAGGGCGCGGGAGATCGAAAACAACCCGAGTGCAGCCAGGAAGCGCAAA GAGCCAACCATGTCGCCGTCCCCCGAGCCCACAGAACCCGAGCGCAAGTTGAAGCGTCCTCGAACGAGGAGGCCA CAGGAGCTCGCGGCTCGCGCACAGCAAACTCAAAATGGGGAATCATCCAGAGCTGGGAGCTCCATTGTACGACCG AGCAGTGATAATTCCACCGGGCCAAGCTTCCTATCGTCGCTATTGAAGGAAGTCGAAGACGCACCGAATCATTCA TATGGACCTTCAGCTTCGACATCTGTCGGTCCTACCGACCATCCATCTCCTGGTTTATCTTCTCCCTCCATCTCT CCCGCCTCATCTCGTTACTCCTCCCCTGTCCTCTCGGCTACACCACCACCTTTCTCGCGAAGCCGCCCCATCTCC CCTTTTCAACTATCATCCCCCGCCCAACCCTCATCTCCTCCTTTCTCGCCCGAAGTGTCCCTATCGGGTAGTCCG TCGTCAAATGGTGCCAAAGAAGACAAACCACAACGGCAAGCCGATCGTCCTCGCTCCCGCATCCCCCAACGAGCA CTGTGTTTCGGGGCATCCCGCTCACCTGACTCATCTCCCACTCGAGCTGGTCCATCCCTGGCCCTCAAAGCCGAT ATCCAGAAAATGGTGGGCACTGGGTTAAAACCTCACTACAAGAAAAAGACCATCTCGAAAGAGCAATATACGAAC ATCAACCGATCTATCTCTCGCATGCTCTACGAGCGGGTCGGGGACAAGGAAACGCTTGAGCCAGATGAACGCACC AACCTCGAAACAGAGGCCAAACACGAAGTGCAGAATACAATTGACGCACTGGTGGTGAAGAGCAAAGAGAAACAG AAACAGCGTATGGTGGCGACCGACACAAACGGTGATCTATAA |
| Gene | >Pro_DTO377G3_2|g635.t1 ATGGTGGAGTTGAGCGATAGTGTCGGAGGTATGACGCTGCCCCTTCCTTGATTTTTGTGACTTATAACATGGTGG TTACAAGTACTGACTATATTGATTTGTTATAGGAACTGTTACTTCATCCTACGCTGTTCAGGACCGAACTCAAGT GGCCGAAGTTGACCCTTCTATGATTATTGAATATGTGGAGGATGACTTGATCGATTTCCAACCATGTACAATTTG CGGACAAGCCGATAACGAGGATGTTCTCCTTTTGTGCGACGGATGTGATGGGCCTTCTCATATATACTGCTTAGG TTTGACCGAGATCCCCTCAGGGTCATGGTACTGCCAACAATGTGAGGAGCTACGTGCTCAGGGACCTGCTCCCGA GGTATCAGCACGGCCGTCGCGGGCGATCGAGCAGCGGAGTCGGCGAACTAGGGCCCAGCAGAGACGACTACAGAA TCGGACTCAGACGAATTCTCTACACTGGGCACGAGTCTGGCAATCTGTCTGGGATCATCTGAATCTCGATCTTGA TTTCCCTTTCGATGACGATCGATCTGCCGAACGCGCGCTGCAACAACGTCGTCGCGAGGAGGCCAACCAGCGCGA ATTTCAAGCCTGGCAACGCCGCTTTGAAGTCGCTGAGCGACAAGGTGGTGGCAGTCGGTTTCGCGATACAGCATC CCTGTTCGATCTTGACCATGCCCGACCATCCCGACCTCGGGTTCCTCGAGTTCCGACACCAGAGCCCGAGTCGCT GGAGGAGATGCGGGCTTGGAACGCCTTCGAGAGGGCGCGGGAGATCGAAAACAACCCGAGTGCAGCCAGGAAGCG CAAAGAGCCAACCATGTCGCCGTCCCCCGAGCCCACAGAACCCGAGCGCAAGTTGAAGCGTCCTCGAACGAGGAG GCCACAGGAGCTCGCGGCTCGCGCACAGCAAACTCAAAATGGGGAATCATCCAGAGCTGGGAGCTCCATTGTACG ACCGAGCAGTGATAATTCCACCGGGCCAAGCTTCCTATCGTCGCTATTGAAGGAAGTCGAAGACGCACCGAATCA TTCATATGGACCTTCAGCTTCGACATCTGTCGGTCCTACCGACCATCCATCTCCTGGTTTATCTTCTCCCTCCAT CTCTCCCGCCTCATCTCGTTACTCCTCCCCTGTCCTCTCGGCTACACCACCACCTTTCTCGCGAAGCCGCCCCAT CTCCCCTTTTCAACTATCATCCCCCGCCCAACCCTCATCTCCTCCTTTCTCGCCCGAAGTGTCCCTATCGGGTAG TCCGTCGTCAAATGGTGCCAAAGAAGACAAACCACAACGGCAAGCCGATCGTCCTCGCTCCCGCATCCCCCAACG AGCACTGTGTTTCGGGGCATCCCGCTCACCTGACTCATCTCCCACTCGAGCTGGTCCATCCCTGGCCCTCAAAGC CGATATCCAGAAAATGGTGGGCACTGGGTTAAAACCTCACTACAAGAAAAAGACCATCTCGAAAGAGCAATATAC GAACATCAACCGATCTATCTCTCGCATGCTCTACGAGCGGGTCGGGGACAAGGAAACGCTTGAGCCAGATGAACG CACCAACCTCGAAACAGAGGCCAAACACGAAGTGCAGAATACAATTGACGCACTGGTGGTGAAGAGCAAAGAGAA ACAGAAACAGCGTATGGTGGCGACCGACACAAACGGTGATCTATAA |