© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g6349.t1 |
| Gene name | |
| Location | scaffold_16:576559..577196 |
| Strand | - |
| Gene length (bp) | 637 |
| Transcript length (bp) | 525 |
| Coding sequence length (bp) | 525 |
| Protein length (aa) | 175 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01284 | MARVEL | Membrane-associating domain | 1.4E-13 | 7 | 127 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 14 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 39 | 61 | 22 |
| 3 | 74 | 96 | 22 |
| 4 | 111 | 133 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1.21 | 0.0 | 3.01 |
| 5d_25C | Five days - 25 degrees Celsius | 0.79 | 0.0 | 2.01 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.57 | 0.0 | 1.42 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.56 | 0.0 | 1.39 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.32 | 0.0 | 3.29 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.78 | 0.0 | 1.87 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.698822 | no |
| 3d_25C | 7d_25C | 0.508937 | no |
| 3d_25C | 7d_15C | 0.945569 | no |
| 3d_25C | 7d_30C | 0.708113 | no |
| 3d_25C | 10d_25C | 0.504405 | no |
| 5d_25C | 7d_25C | 0.829083 | no |
| 5d_25C | 7d_15C | 0.615978 | no |
| 5d_25C | 7d_30C | 0.973142 | no |
| 5d_25C | 10d_25C | 0.807307 | no |
| 7d_25C | 7d_15C | 0.456096 | no |
| 7d_25C | 7d_30C | 1.000000 | no |
| 7d_25C | 10d_25C | 1.000000 | no |
| 7d_15C | 7d_30C | 0.635345 | no |
| 7d_15C | 10d_25C | 0.443541 | no |
| 7d_30C | 10d_25C | 1.000000 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6349.t1 MLSWINPLRIVQAILSLATIGLTAYEIASLYDKWSYSNVVYYMLFNGCWTTAIAVPYLGLAPLRFPRFSHEIAIP LIELLTGGLWLSGWIALAAMIPSPGACHYSSCHALQALIVVGAVQWATFVVTNTFAIIDLKNSRRNAKNHRDDAS PEMSAADANTNGNTTTTATADGAV* |
| Coding | >Pro_DTO377G3_2|g6349.t1 ATGCTTTCCTGGATCAACCCATTGCGAATCGTGCAGGCCATCCTGTCCCTAGCCACGATTGGTCTTACCGCATAT GAAATTGCCTCTCTGTACGACAAATGGTCCTACTCGAATGTAGTCTACTACATGCTCTTCAACGGCTGCTGGACA ACAGCCATCGCAGTCCCATACCTGGGCCTCGCACCCCTACGCTTCCCTCGCTTCTCGCATGAAATCGCAATTCCT CTCATAGAGCTGCTCACCGGCGGCCTCTGGCTCAGCGGCTGGATCGCCTTGGCTGCAATGATTCCCTCGCCTGGC GCATGCCACTATTCCAGCTGCCACGCCCTCCAGGCTTTGATTGTCGTCGGGGCCGTGCAATGGGCTACTTTCGTT GTCACAAATACCTTCGCCATCATAGACCTTAAGAACTCTCGCCGCAACGCGAAGAATCACCGTGATGATGCTTCC CCGGAGATGAGTGCTGCTGATGCGAATACCAACGGCAATACTACCACTACCGCCACTGCCGATGGGGCTGTCTAG |
| Transcript | >Pro_DTO377G3_2|g6349.t1 ATGCTTTCCTGGATCAACCCATTGCGAATCGTGCAGGCCATCCTGTCCCTAGCCACGATTGGTCTTACCGCATAT GAAATTGCCTCTCTGTACGACAAATGGTCCTACTCGAATGTAGTCTACTACATGCTCTTCAACGGCTGCTGGACA ACAGCCATCGCAGTCCCATACCTGGGCCTCGCACCCCTACGCTTCCCTCGCTTCTCGCATGAAATCGCAATTCCT CTCATAGAGCTGCTCACCGGCGGCCTCTGGCTCAGCGGCTGGATCGCCTTGGCTGCAATGATTCCCTCGCCTGGC GCATGCCACTATTCCAGCTGCCACGCCCTCCAGGCTTTGATTGTCGTCGGGGCCGTGCAATGGGCTACTTTCGTT GTCACAAATACCTTCGCCATCATAGACCTTAAGAACTCTCGCCGCAACGCGAAGAATCACCGTGATGATGCTTCC CCGGAGATGAGTGCTGCTGATGCGAATACCAACGGCAATACTACCACTACCGCCACTGCCGATGGGGCTGTCTAG |
| Gene | >Pro_DTO377G3_2|g6349.t1 ATGCTTTCCTGGATCAACCCATTGCGAATCGTGCAGGCCATCCTGTCCCTAGCCACGATTGGTCTTACCGCATAT GGTATGTTTGACTATCCACAAAGTACTCCATGACAGCACTGACTCCATCTAGAAATTGCCTCTCTGTACGACAAA TGGTCCTACTCGAATGTAGTCTACTACATGCTCTTCAACGGCTGCTGGACAACAGCCATCGCAGTCCCATACCTG GGCCTCGCACCCCTACGCTTCCCTCGCTTCTCGCATGAAATCGCAATTCCTCTCATAGAGCTGCTCACCGGCGGC CTCTGGCTCAGCGGCTGGATCGCCTTGGCTGCAATGATTCCCTCGCCTGGCGCATGCCACTATTCCAGCTGCCAC GCCCTCCAGGCTTTGATTGTCGTCGGGGCCGTGCAATGGTAAAACAGATGCCTAAGGATTGACGCATGCATACAT TATCTAACCTGTGGTTCTGAGCAGGGCTACTTTCGTTGTCACAAATACCTTCGCCATCATAGACCTTAAGAACTC TCGCCGCAACGCGAAGAATCACCGTGATGATGCTTCCCCGGAGATGAGTGCTGCTGATGCGAATACCAACGGCAA TACTACCACTACCGCCACTGCCGATGGGGCTGTCTAG |