© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6345.t1 |
| Gene name | |
| Location | scaffold_16:570252..571910 |
| Strand | + |
| Gene length (bp) | 1658 |
| Transcript length (bp) | 1497 |
| Coding sequence length (bp) | 1497 |
| Protein length (aa) | 499 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00171 | Aldedh | Aldehyde dehydrogenase family | 9.4E-168 | 24 | 487 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 331.17 | 193.02 | 469.33 |
| 5d_25C | Five days - 25 degrees Celsius | 349.53 | 202.10 | 496.97 |
| 7d_25C | Seven days - 25 degrees Celsius | 314.26 | 180.89 | 447.62 |
| 10d_25C | Ten days - 25 degrees Celsius | 344.31 | 199.22 | 489.41 |
| 7d_15C | Seven days - 15 degrees Celsius | 411.66 | 225.55 | 597.78 |
| 7d_30C | Seven days - 30 degrees Celsius | 289.20 | 166.08 | 412.31 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.873219 | no |
| 3d_25C | 7d_25C | 0.873276 | no |
| 3d_25C | 7d_15C | 0.426226 | no |
| 3d_25C | 7d_30C | 0.639906 | no |
| 3d_25C | 10d_25C | 0.913188 | no |
| 5d_25C | 7d_25C | 0.726203 | no |
| 5d_25C | 7d_15C | 0.583551 | no |
| 5d_25C | 7d_30C | 0.490003 | no |
| 5d_25C | 10d_25C | 0.970626 | no |
| 7d_25C | 7d_15C | 0.306608 | no |
| 7d_25C | 7d_30C | 0.797482 | no |
| 7d_25C | 10d_25C | 0.775130 | no |
| 7d_15C | 7d_30C | 0.158199 | no |
| 7d_15C | 10d_25C | 0.539113 | no |
| 7d_30C | 10d_25C | 0.531027 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6345.t1 MKHGAPQLKDQSLFIQKAYINGEWVDAKSGKTFDVYDPATGKLIGTCPELDTSDVEKAIQAASEAFPKFRTTLGR ERARMLRRWYDLLVANADDLAKLITWENGKPLADAKGEVNYAASFFEWFSEEAPRTYGDTIPASIPGNRVMTVKQ PVGVCGLITPWNFPAAMITRKIGPALAAGCTVVAKSPQETPFTANAIAELAHRAGIPKGVVNFVTSSKNTPAVGE LLTTHPEVRKVSFTGSTNVGRILGKQAASTIKKVSWELGGNAPFIVFDDVDDLDAAVTGAINSKFRSSGQTCVCA NRIYIQEGVYEEFTKRFVEKVKDFKLGGGFDAGITHGPVIHERAANKAHEHVLDAVSKGAKVVIGGQRATALGPN FYHPTVLTGMTKDMLLACEETFGPVAGLFPFKTEKEVVELANHAEVGLAGYFFSGNVRRIFRVAEALEVGMVGVN TGLISDVASPFGGVKQSGFGREGSKYGIDEFMTIKTITFGGMSLPLQE* |
| Coding | >Pro_DTO377G3_2|g6345.t1 ATGAAACACGGCGCGCCGCAGTTGAAAGACCAGTCGCTTTTCATTCAGAAGGCGTACATTAATGGCGAGTGGGTC GATGCGAAGTCCGGCAAGACTTTCGATGTCTACGACCCAGCGACTGGAAAATTGATCGGAACTTGCCCCGAGCTC GATACCTCCGATGTTGAGAAGGCGATTCAGGCCGCTTCCGAGGCCTTCCCCAAATTCCGCACAACGCTAGGCCGC GAGCGCGCGCGCATGCTGCGCCGCTGGTACGATTTGTTGGTCGCGAATGCGGATGATCTTGCTAAGCTGATTACA TGGGAGAACGGAAAGCCCCTGGCGGACGCGAAGGGCGAGGTCAACTACGCCGCCAGCTTCTTCGAGTGGTTCAGT GAGGAGGCACCCCGCACATACGGCGACACAATCCCCGCTTCCATCCCCGGAAACCGGGTCATGACTGTTAAGCAG CCTGTTGGTGTGTGTGGTTTGATTACGCCATGGAACTTCCCCGCGGCGATGATTACCCGGAAGATTGGCCCTGCC CTAGCGGCGGGCTGCACGGTCGTGGCCAAGTCTCCCCAGGAGACGCCCTTCACAGCGAACGCGATCGCTGAGCTT GCGCACCGGGCTGGCATCCCCAAGGGTGTTGTCAACTTTGTTACCTCCTCGAAGAACACCCCGGCGGTGGGTGAG CTCCTTACCACCCACCCCGAGGTGCGTAAAGTGTCATTCACCGGCTCTACCAACGTTGGCCGCATCCTCGGGAAG CAGGCTGCGTCTACAATTAAGAAGGTCTCCTGGGAGCTCGGCGGTAATGCGCCATTCATCGTTTTCGACGACGTC GATGACCTCGACGCTGCCGTGACCGGCGCCATCAACTCCAAGTTCCGCAGCTCTGGTCAGACCTGCGTGTGCGCT AACCGGATCTATATCCAAGAAGGTGTTTATGAGGAGTTTACCAAGCGCTTTGTCGAGAAGGTTAAGGACTTCAAG CTCGGTGGTGGTTTCGATGCCGGTATCACCCACGGACCTGTCATTCACGAGCGCGCCGCCAACAAGGCCCATGAA CATGTGCTGGATGCTGTTTCCAAAGGCGCCAAGGTTGTTATTGGTGGTCAGAGGGCTACCGCGCTCGGACCTAAC TTCTACCACCCCACTGTTCTGACCGGCATGACCAAGGATATGCTTCTCGCTTGCGAGGAGACTTTCGGCCCCGTG GCTGGTCTTTTCCCCTTCAAGACCGAGAAGGAGGTTGTTGAGCTGGCTAACCATGCCGAGGTCGGTCTTGCTGGT TACTTCTTCAGTGGTAATGTTCGCCGCATCTTCCGCGTTGCCGAAGCCCTAGAGGTTGGCATGGTTGGTGTCAAC ACTGGTTTGATTAGTGACGTTGCCTCTCCATTCGGTGGTGTCAAGCAGAGTGGCTTCGGCCGTGAGGGCAGCAAG TATGGTATTGATGAGTTCATGACTATCAAGACTATAACTTTTGGTGGCATGAGTCTGCCTCTGCAGGAGTAA |
| Transcript | >Pro_DTO377G3_2|g6345.t1 ATGAAACACGGCGCGCCGCAGTTGAAAGACCAGTCGCTTTTCATTCAGAAGGCGTACATTAATGGCGAGTGGGTC GATGCGAAGTCCGGCAAGACTTTCGATGTCTACGACCCAGCGACTGGAAAATTGATCGGAACTTGCCCCGAGCTC GATACCTCCGATGTTGAGAAGGCGATTCAGGCCGCTTCCGAGGCCTTCCCCAAATTCCGCACAACGCTAGGCCGC GAGCGCGCGCGCATGCTGCGCCGCTGGTACGATTTGTTGGTCGCGAATGCGGATGATCTTGCTAAGCTGATTACA TGGGAGAACGGAAAGCCCCTGGCGGACGCGAAGGGCGAGGTCAACTACGCCGCCAGCTTCTTCGAGTGGTTCAGT GAGGAGGCACCCCGCACATACGGCGACACAATCCCCGCTTCCATCCCCGGAAACCGGGTCATGACTGTTAAGCAG CCTGTTGGTGTGTGTGGTTTGATTACGCCATGGAACTTCCCCGCGGCGATGATTACCCGGAAGATTGGCCCTGCC CTAGCGGCGGGCTGCACGGTCGTGGCCAAGTCTCCCCAGGAGACGCCCTTCACAGCGAACGCGATCGCTGAGCTT GCGCACCGGGCTGGCATCCCCAAGGGTGTTGTCAACTTTGTTACCTCCTCGAAGAACACCCCGGCGGTGGGTGAG CTCCTTACCACCCACCCCGAGGTGCGTAAAGTGTCATTCACCGGCTCTACCAACGTTGGCCGCATCCTCGGGAAG CAGGCTGCGTCTACAATTAAGAAGGTCTCCTGGGAGCTCGGCGGTAATGCGCCATTCATCGTTTTCGACGACGTC GATGACCTCGACGCTGCCGTGACCGGCGCCATCAACTCCAAGTTCCGCAGCTCTGGTCAGACCTGCGTGTGCGCT AACCGGATCTATATCCAAGAAGGTGTTTATGAGGAGTTTACCAAGCGCTTTGTCGAGAAGGTTAAGGACTTCAAG CTCGGTGGTGGTTTCGATGCCGGTATCACCCACGGACCTGTCATTCACGAGCGCGCCGCCAACAAGGCCCATGAA CATGTGCTGGATGCTGTTTCCAAAGGCGCCAAGGTTGTTATTGGTGGTCAGAGGGCTACCGCGCTCGGACCTAAC TTCTACCACCCCACTGTTCTGACCGGCATGACCAAGGATATGCTTCTCGCTTGCGAGGAGACTTTCGGCCCCGTG GCTGGTCTTTTCCCCTTCAAGACCGAGAAGGAGGTTGTTGAGCTGGCTAACCATGCCGAGGTCGGTCTTGCTGGT TACTTCTTCAGTGGTAATGTTCGCCGCATCTTCCGCGTTGCCGAAGCCCTAGAGGTTGGCATGGTTGGTGTCAAC ACTGGTTTGATTAGTGACGTTGCCTCTCCATTCGGTGGTGTCAAGCAGAGTGGCTTCGGCCGTGAGGGCAGCAAG TATGGTATTGATGAGTTCATGACTATCAAGACTATAACTTTTGGTGGCATGAGTCTGCCTCTGCAGGAGTAA |
| Gene | >Pro_DTO377G3_2|g6345.t1 ATGAAACACGGCGCGCCGCAGGTAAGATCTGTAGTCGAATGTGATTTCCATAGTTCGTACTGATCGATTACAGTT GAAAGACCAGTCGCTTTTCATTCAGAAGGCGTACATTAATGGCGAGTGGGTCGATGCGAAGTCCGGCAAGACTTT CGATGTCTACGGTAGGTACCAAATTGAATATTCGGGTTCAAGGTGGTCGCTGACTTTTCGTCCTATTCAGACCCA GCGACTGGAAAATTGATCGGAACTTGCCCCGAGCTCGATACCTCCGATGTTGAGAAGGCGATTCAGGCCGCTTCC GAGGCCTTCCCCAAATTCCGCACAACGCTAGGCCGCGAGCGCGCGCGCATGCTGCGCCGCTGGTACGATTTGTTG GTCGCGAATGCGGATGATCTTGCTAAGCTGATTACATGGGAGAACGGAAAGCCCCTGGCGGACGCGAAGGGCGAG GTCAACTACGCCGCCAGCTTCTTCGAGTGGTTCAGTGAGGAGGCACCCCGCACATACGGCGACACAATCCCCGCT TCCATCCCCGGAAACCGGGTCATGACTGTTAAGCAGCCTGTTGGTGTGTGTGGTTTGATTACGCCATGGAACTTC CCCGCGGCGATGATTACCCGGAAGATTGGCCCTGCCCTAGCGGCGGGCTGCACGGTCGTGGCCAAGTCTCCCCAG GAGACGCCCTTCACAGCGAACGCGATCGCTGAGCTTGCGCACCGGGCTGGCATCCCCAAGGGTGTTGTCAACTTT GTTACCTCCTCGAAGAACACCCCGGCGGTGGGTGAGCTCCTTACCACCCACCCCGAGGTGCGTAAAGTGTCATTC ACCGGCTCTACCAACGTTGGCCGCATCCTCGGGAAGCAGGCTGCGTCTACAATTAAGAAGGTCTCCTGGGAGCTC GGCGGTAATGCGCCATTCATCGTTTTCGACGACGTCGATGACCTCGACGCTGCCGTGACCGGCGCCATCAACTCC AAGTTCCGCAGCTCTGGTCAGACCTGCGTGTGCGCTAACCGGATCTATATCCAAGAAGGTGTTTATGAGGAGTTT ACCAAGCGCTTTGTCGAGAAGGTTAAGGACTTCAAGCTCGGTGGTGGTTTCGATGCCGGTATCACCCACGGACCT GTCATTCACGAGCGCGCCGCCAACAAGGCCCATGAACATGTGCTGGATGCTGTTTCCAAAGGCGCCAAGGTTGTT ATTGGTGGTCAGAGGGCTACCGCGCTCGGACCTAACTTCTACCACCCCACTGTTCTGACCGGCATGACCAAGGAT ATGCTTCTCGCTTGCGAGGAGACTTTCGGCCCCGTGGCTGGTCTTTTCCCCTTCAAGACCGAGAAGGAGGTTGTT GAGCTGGCTAACCATGCCGAGGTCGGTCTTGCTGGTTACTTCTTCAGTGGTAATGTTCGCCGCATCTTCCGCGTT GCCGAAGCCCTAGAGGTTGGCATGGTTGGTGTCAACACTGGTTTGATTAGTGACGTTGCCTCTCCGTAAGTTAAA ATCTCCCACATTGCTATATCAGATACTAACCTTTCTACAGATTCGGTGGTGTCAAGCAGAGTGGCTTCGGCCGTG AGGGCAGCAAGTATGGTATTGATGAGTTCATGACTATCAAGACTATAACTTTTGGTGGCATGAGTCTGCCTCTGC AGGAGTAA |