Protein ID | Pro_DTO377G3_2|g6336.t1 |
Gene name | |
Location | scaffold_16:548461..551391 |
Strand | - |
Gene length (bp) | 2930 |
Transcript length (bp) | 2838 |
Coding sequence length (bp) | 2838 |
Protein length (aa) | 946 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF05691 | Raffinose_syn | Raffinose synthase or seed imbibition protein Sip1 | 3.2E-46 | 388 | 753 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 42 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
3d_25C | Three days - 25 degrees Celsius | 23.36 | 13.99 | 32.74 |
5d_25C | Five days - 25 degrees Celsius | 27.33 | 16.33 | 38.33 |
7d_25C | Seven days - 25 degrees Celsius | 28.52 | 17.20 | 39.84 |
10d_25C | Ten days - 25 degrees Celsius | 30.85 | 18.73 | 42.98 |
7d_15C | Seven days - 15 degrees Celsius | 30.41 | 18.28 | 42.54 |
7d_30C | Seven days - 30 degrees Celsius | 26.91 | 16.14 | 37.68 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
3d_25C | 5d_25C | 0.563523 | no |
3d_25C | 7d_25C | 0.426639 | no |
3d_25C | 7d_15C | 0.260537 | no |
3d_25C | 7d_30C | 0.606714 | no |
3d_25C | 10d_25C | 0.229796 | no |
5d_25C | 7d_25C | 0.903280 | no |
5d_25C | 7d_15C | 0.719167 | no |
5d_25C | 7d_30C | 0.966772 | no |
5d_25C | 10d_25C | 0.670689 | no |
7d_25C | 7d_15C | 0.840349 | no |
7d_25C | 7d_30C | 0.854454 | no |
7d_25C | 10d_25C | 0.796363 | no |
7d_15C | 7d_30C | 0.667944 | no |
7d_15C | 10d_25C | 0.968771 | no |
7d_30C | 10d_25C | 0.625001 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g6336.t1 MEVINRDTSTLPIQGPSQSARQLQASFVYPAQMAMFARVTSYPPLGQITCLQTAKKASRLEEDALRFTVTIESSG SFPEQSWEAQIWHNITGPEWEHLPLQRCNTDHADLLSGNDEEYNYHRYVFSEEIILPAPGGHAQFTVRFRTSPDT EWQWANQRHPVGDGEILYSARYSDLDNAVSTGVAARAPKEQLEKYIDNLHGDLRIESRPSEAPGSILWALSGDTD AVRNGSSTIKQLALGTASSVVRYFSLVRVGSAWLGPRHGKDKFRLTEDAIFCSFLRDDGVNLVLLAVSGVNDVLT VFQSGGNGEVVISAKSDDLEASEFHVLVSAAENFEVAMSAVVYEARKVVRPFADTSNLDLDDSVPLSPPGDDMVI VEKDPSAQWLSEWFDGLTYCTWNGLGQDLTEEKILHALDSLKANGINIVNLIIDDGWQTTDNEGQSQFKQGWKQF EAHPKGFPEGLKHTVGAIRRSHPDIDHIAVWHALLGYWGGISPDGDLAQKFKTKQVKIKDAAANGSFTESPLDGT IVAIDPDDINRFYDEFYDYLTSVGIDSVKTDAQFFLDLLDDPADRRRFLTSYQDAWSIASLKHLSTRSISCGSMT PQIIFHSQMPTNKPTIPLRNSDDFFPDVVASHPWHVFCNAHNALLTRYLNVLPDWDMFQTSHLYASFHAAARCVS GGPIYITDEPGKHDLALLNQITAPTVKGITVILRPSVIGRTIDIYNDYDEGRVLRVGSYTGWAKTGSGILGVFNI QSAEASIIVPLMDFPGIHEDSEGQYIVRAHSSGRISHRMRPLSRESLVSVVLGPKGWEILTAYPTQSFMLTGSHD GNSSGDRLTHVAVLGLLGKMTGVAAIVTSDISVVENGRLRVDISLKALGTLGIYFSDLQDRSIARNFMVMILGRP VPQNTVWKQGGENANVLAIDILAAWKSMKLDSGWSNEAFVQVFVS* |
Coding | >Pro_DTO377G3_2|g6336.t1 ATGGAGGTCATTAATAGAGATACCTCAACCCTCCCAATCCAGGGCCCTAGCCAAAGTGCACGACAGCTACAAGCA TCATTTGTTTATCCGGCTCAAATGGCCATGTTTGCACGTGTCACATCCTATCCTCCGCTGGGACAAATCACTTGT CTCCAAACGGCGAAGAAGGCATCGCGATTGGAAGAAGATGCGCTACGTTTCACGGTCACTATCGAGTCCAGCGGC TCATTCCCCGAACAATCATGGGAAGCACAGATCTGGCATAACATCACTGGCCCCGAATGGGAACATCTGCCATTG CAAAGATGTAACACAGATCATGCTGATCTTTTGTCCGGAAACGATGAAGAGTACAACTATCATCGCTATGTATTC TCAGAAGAGATAATCCTACCAGCCCCAGGAGGTCATGCACAGTTCACAGTCCGGTTCCGAACCAGCCCAGACACA GAATGGCAGTGGGCTAATCAAAGACACCCGGTGGGCGACGGTGAAATTCTATATAGTGCACGCTACTCTGATCTT GACAACGCTGTGTCCACTGGTGTCGCTGCACGAGCTCCCAAAGAGCAACTAGAAAAGTACATCGATAATCTTCAT GGTGACTTGCGGATTGAGTCTCGACCCAGTGAAGCTCCTGGATCGATCCTCTGGGCTCTTTCTGGAGATACAGAT GCTGTTCGAAATGGATCTTCAACCATCAAACAACTTGCACTTGGGACCGCTTCGTCGGTGGTGAGGTACTTCTCA CTAGTACGTGTGGGGAGCGCATGGCTTGGCCCTAGACATGGCAAAGATAAATTTCGACTTACTGAAGATGCGATA TTTTGCTCTTTCCTGCGTGATGATGGCGTGAATCTTGTTCTACTGGCCGTTTCTGGAGTCAACGATGTTTTGACC GTGTTTCAGTCAGGTGGGAACGGTGAAGTCGTGATCTCCGCAAAAAGTGACGATTTAGAAGCATCTGAATTCCAT GTGCTTGTTAGCGCAGCGGAAAACTTTGAAGTTGCCATGTCTGCAGTGGTTTATGAGGCACGGAAAGTCGTCAGG CCATTTGCTGATACGAGTAATCTGGATTTGGACGATTCGGTCCCACTATCTCCCCCTGGTGATGATATGGTCATT GTTGAGAAAGACCCGAGTGCACAGTGGCTTTCTGAGTGGTTCGACGGTCTCACATATTGTACCTGGAATGGGCTT GGACAGGACCTCACCGAAGAGAAGATCTTGCATGCCTTAGACTCGTTGAAGGCGAATGGGATCAACATCGTCAAT CTTATTATCGATGATGGCTGGCAGACAACCGACAATGAAGGGCAGTCTCAGTTCAAGCAAGGCTGGAAGCAGTTC GAAGCACACCCGAAAGGATTTCCGGAAGGATTGAAGCATACTGTGGGAGCTATTCGTCGATCACATCCCGATATC GACCATATCGCGGTCTGGCATGCCTTGCTGGGTTATTGGGGAGGTATCTCACCAGATGGGGATCTAGCCCAAAAA TTCAAAACAAAGCAAGTGAAGATCAAAGACGCAGCTGCCAATGGGTCATTCACGGAGAGCCCTCTAGATGGCACA ATCGTTGCCATTGATCCCGATGATATCAACCGATTCTACGATGAGTTCTATGACTACCTTACGTCTGTTGGTATA GACTCGGTCAAGACAGATGCACAATTCTTCCTTGACCTCCTTGATGACCCAGCGGACCGCCGAAGATTCTTGACT TCTTATCAAGATGCATGGTCTATCGCATCACTTAAGCACTTGAGCACTCGGTCAATCTCATGCGGGTCAATGACC CCTCAAATAATCTTCCATTCACAAATGCCCACCAACAAGCCCACTATTCCATTGCGAAACTCCGACGACTTCTTT CCAGATGTTGTTGCCTCTCACCCATGGCATGTGTTTTGTAATGCTCATAATGCATTACTCACCCGATATTTGAAC GTATTGCCGGATTGGGATATGTTCCAAACAAGTCACCTATACGCGTCATTCCACGCTGCAGCTCGATGTGTATCC GGAGGGCCAATTTATATCACCGATGAGCCGGGTAAACATGACCTGGCCCTACTCAATCAGATAACTGCACCTACT GTCAAAGGAATCACGGTGATCTTGCGTCCTAGTGTCATTGGACGCACGATAGACATATACAACGACTACGACGAA GGACGTGTTCTGCGCGTTGGAAGCTATACCGGCTGGGCCAAGACTGGAAGTGGAATCTTAGGCGTTTTCAATATT CAATCTGCCGAGGCCTCGATCATAGTCCCATTGATGGATTTCCCAGGAATTCACGAGGACTCCGAAGGCCAGTAT ATTGTGCGTGCACACAGCAGCGGTAGGATATCGCATCGCATGCGGCCGTTGAGCCGGGAATCTCTGGTATCAGTT GTTCTGGGGCCAAAGGGCTGGGAGATCCTCACTGCTTACCCGACTCAGTCGTTCATGCTGACGGGCAGCCATGAC GGCAACTCTTCTGGTGACCGTCTGACACACGTGGCTGTGCTCGGTCTTTTGGGAAAGATGACTGGTGTAGCGGCT ATAGTGACTTCAGATATATCTGTTGTTGAGAATGGTCGTTTACGAGTTGACATCAGCTTAAAAGCGCTGGGCACT CTGGGGATCTATTTCTCGGATCTTCAAGACAGGAGCATTGCACGAAACTTCATGGTCATGATTTTGGGACGACCA GTTCCACAGAATACGGTATGGAAACAAGGTGGAGAGAATGCTAATGTCCTGGCAATCGATATATTGGCGGCATGG AAATCGATGAAATTGGACAGTGGATGGAGTAACGAGGCATTCGTGCAGGTTTTTGTGAGTTGA |
Transcript | >Pro_DTO377G3_2|g6336.t1 ATGGAGGTCATTAATAGAGATACCTCAACCCTCCCAATCCAGGGCCCTAGCCAAAGTGCACGACAGCTACAAGCA TCATTTGTTTATCCGGCTCAAATGGCCATGTTTGCACGTGTCACATCCTATCCTCCGCTGGGACAAATCACTTGT CTCCAAACGGCGAAGAAGGCATCGCGATTGGAAGAAGATGCGCTACGTTTCACGGTCACTATCGAGTCCAGCGGC TCATTCCCCGAACAATCATGGGAAGCACAGATCTGGCATAACATCACTGGCCCCGAATGGGAACATCTGCCATTG CAAAGATGTAACACAGATCATGCTGATCTTTTGTCCGGAAACGATGAAGAGTACAACTATCATCGCTATGTATTC TCAGAAGAGATAATCCTACCAGCCCCAGGAGGTCATGCACAGTTCACAGTCCGGTTCCGAACCAGCCCAGACACA GAATGGCAGTGGGCTAATCAAAGACACCCGGTGGGCGACGGTGAAATTCTATATAGTGCACGCTACTCTGATCTT GACAACGCTGTGTCCACTGGTGTCGCTGCACGAGCTCCCAAAGAGCAACTAGAAAAGTACATCGATAATCTTCAT GGTGACTTGCGGATTGAGTCTCGACCCAGTGAAGCTCCTGGATCGATCCTCTGGGCTCTTTCTGGAGATACAGAT GCTGTTCGAAATGGATCTTCAACCATCAAACAACTTGCACTTGGGACCGCTTCGTCGGTGGTGAGGTACTTCTCA CTAGTACGTGTGGGGAGCGCATGGCTTGGCCCTAGACATGGCAAAGATAAATTTCGACTTACTGAAGATGCGATA TTTTGCTCTTTCCTGCGTGATGATGGCGTGAATCTTGTTCTACTGGCCGTTTCTGGAGTCAACGATGTTTTGACC GTGTTTCAGTCAGGTGGGAACGGTGAAGTCGTGATCTCCGCAAAAAGTGACGATTTAGAAGCATCTGAATTCCAT GTGCTTGTTAGCGCAGCGGAAAACTTTGAAGTTGCCATGTCTGCAGTGGTTTATGAGGCACGGAAAGTCGTCAGG CCATTTGCTGATACGAGTAATCTGGATTTGGACGATTCGGTCCCACTATCTCCCCCTGGTGATGATATGGTCATT GTTGAGAAAGACCCGAGTGCACAGTGGCTTTCTGAGTGGTTCGACGGTCTCACATATTGTACCTGGAATGGGCTT GGACAGGACCTCACCGAAGAGAAGATCTTGCATGCCTTAGACTCGTTGAAGGCGAATGGGATCAACATCGTCAAT CTTATTATCGATGATGGCTGGCAGACAACCGACAATGAAGGGCAGTCTCAGTTCAAGCAAGGCTGGAAGCAGTTC GAAGCACACCCGAAAGGATTTCCGGAAGGATTGAAGCATACTGTGGGAGCTATTCGTCGATCACATCCCGATATC GACCATATCGCGGTCTGGCATGCCTTGCTGGGTTATTGGGGAGGTATCTCACCAGATGGGGATCTAGCCCAAAAA TTCAAAACAAAGCAAGTGAAGATCAAAGACGCAGCTGCCAATGGGTCATTCACGGAGAGCCCTCTAGATGGCACA ATCGTTGCCATTGATCCCGATGATATCAACCGATTCTACGATGAGTTCTATGACTACCTTACGTCTGTTGGTATA GACTCGGTCAAGACAGATGCACAATTCTTCCTTGACCTCCTTGATGACCCAGCGGACCGCCGAAGATTCTTGACT TCTTATCAAGATGCATGGTCTATCGCATCACTTAAGCACTTGAGCACTCGGTCAATCTCATGCGGGTCAATGACC CCTCAAATAATCTTCCATTCACAAATGCCCACCAACAAGCCCACTATTCCATTGCGAAACTCCGACGACTTCTTT CCAGATGTTGTTGCCTCTCACCCATGGCATGTGTTTTGTAATGCTCATAATGCATTACTCACCCGATATTTGAAC GTATTGCCGGATTGGGATATGTTCCAAACAAGTCACCTATACGCGTCATTCCACGCTGCAGCTCGATGTGTATCC GGAGGGCCAATTTATATCACCGATGAGCCGGGTAAACATGACCTGGCCCTACTCAATCAGATAACTGCACCTACT GTCAAAGGAATCACGGTGATCTTGCGTCCTAGTGTCATTGGACGCACGATAGACATATACAACGACTACGACGAA GGACGTGTTCTGCGCGTTGGAAGCTATACCGGCTGGGCCAAGACTGGAAGTGGAATCTTAGGCGTTTTCAATATT CAATCTGCCGAGGCCTCGATCATAGTCCCATTGATGGATTTCCCAGGAATTCACGAGGACTCCGAAGGCCAGTAT ATTGTGCGTGCACACAGCAGCGGTAGGATATCGCATCGCATGCGGCCGTTGAGCCGGGAATCTCTGGTATCAGTT GTTCTGGGGCCAAAGGGCTGGGAGATCCTCACTGCTTACCCGACTCAGTCGTTCATGCTGACGGGCAGCCATGAC GGCAACTCTTCTGGTGACCGTCTGACACACGTGGCTGTGCTCGGTCTTTTGGGAAAGATGACTGGTGTAGCGGCT ATAGTGACTTCAGATATATCTGTTGTTGAGAATGGTCGTTTACGAGTTGACATCAGCTTAAAAGCGCTGGGCACT CTGGGGATCTATTTCTCGGATCTTCAAGACAGGAGCATTGCACGAAACTTCATGGTCATGATTTTGGGACGACCA GTTCCACAGAATACGGTATGGAAACAAGGTGGAGAGAATGCTAATGTCCTGGCAATCGATATATTGGCGGCATGG AAATCGATGAAATTGGACAGTGGATGGAGTAACGAGGCATTCGTGCAGGTTTTTGTGAGTTGA |
Gene | >Pro_DTO377G3_2|g6336.t1 ATGGAGGTCATTAATAGAGATACCTCAACCCTCCCAATCCAGGGCCCTAGCCAAAGTGCACGACAGCTACAAGCA TCATTTGTTTATCCGGCTCAAATGGCCATGTTTGCACGTGTCACATCCTATCCTCCGCTGGGACAAATCACTTGT CTCCAAACGGCGAAGAAGGCATCGCGATTGGAAGAAGATGCGGTGAGTCCCCCAAATATGGTCATATCTGATATT GCCAGACTTTCTGAAATGATTGAGGGTGTAATGCAAAGGAATACTAAAATTGTCAACAGCTACGTTTCACGGTCA CTATCGAGTCCAGCGGCTCATTCCCCGAACAATCATGGGAAGCACAGATCTGGCATAACATCACTGGCCCCGAAT GGGAACATCTGCCATTGCAAAGATGTAACACAGATCATGCTGATCTTTTGTCCGGAAACGATGAAGAGTACAACT ATCATCGCTATGTATTCTCAGAAGAGATAATCCTACCAGCCCCAGGAGGTCATGCACAGTTCACAGTCCGGTTCC GAACCAGCCCAGACACAGAATGGCAGTGGGCTAATCAAAGACACCCGGTGGGCGACGGTGAAATTCTATATAGTG CACGCTACTCTGATCTTGACAACGCTGTGTCCACTGGTGTCGCTGCACGAGCTCCCAAAGAGCAACTAGAAAAGT ACATCGATAATCTTCATGGTGACTTGCGGATTGAGTCTCGACCCAGTGAAGCTCCTGGATCGATCCTCTGGGCTC TTTCTGGAGATACAGATGCTGTTCGAAATGGATCTTCAACCATCAAACAACTTGCACTTGGGACCGCTTCGTCGG TGGTGAGGTACTTCTCACTAGTACGTGTGGGGAGCGCATGGCTTGGCCCTAGACATGGCAAAGATAAATTTCGAC TTACTGAAGATGCGATATTTTGCTCTTTCCTGCGTGATGATGGCGTGAATCTTGTTCTACTGGCCGTTTCTGGAG TCAACGATGTTTTGACCGTGTTTCAGTCAGGTGGGAACGGTGAAGTCGTGATCTCCGCAAAAAGTGACGATTTAG AAGCATCTGAATTCCATGTGCTTGTTAGCGCAGCGGAAAACTTTGAAGTTGCCATGTCTGCAGTGGTTTATGAGG CACGGAAAGTCGTCAGGCCATTTGCTGATACGAGTAATCTGGATTTGGACGATTCGGTCCCACTATCTCCCCCTG GTGATGATATGGTCATTGTTGAGAAAGACCCGAGTGCACAGTGGCTTTCTGAGTGGTTCGACGGTCTCACATATT GTACCTGGAATGGGCTTGGACAGGACCTCACCGAAGAGAAGATCTTGCATGCCTTAGACTCGTTGAAGGCGAATG GGATCAACATCGTCAATCTTATTATCGATGATGGCTGGCAGACAACCGACAATGAAGGGCAGTCTCAGTTCAAGC AAGGCTGGAAGCAGTTCGAAGCACACCCGAAAGGATTTCCGGAAGGATTGAAGCATACTGTGGGAGCTATTCGTC GATCACATCCCGATATCGACCATATCGCGGTCTGGCATGCCTTGCTGGGTTATTGGGGAGGTATCTCACCAGATG GGGATCTAGCCCAAAAATTCAAAACAAAGCAAGTGAAGATCAAAGACGCAGCTGCCAATGGGTCATTCACGGAGA GCCCTCTAGATGGCACAATCGTTGCCATTGATCCCGATGATATCAACCGATTCTACGATGAGTTCTATGACTACC TTACGTCTGTTGGTATAGACTCGGTCAAGACAGATGCACAATTCTTCCTTGACCTCCTTGATGACCCAGCGGACC GCCGAAGATTCTTGACTTCTTATCAAGATGCATGGTCTATCGCATCACTTAAGCACTTGAGCACTCGGTCAATCT CATGCGGGTCAATGACCCCTCAAATAATCTTCCATTCACAAATGCCCACCAACAAGCCCACTATTCCATTGCGAA ACTCCGACGACTTCTTTCCAGATGTTGTTGCCTCTCACCCATGGCATGTGTTTTGTAATGCTCATAATGCATTAC TCACCCGATATTTGAACGTATTGCCGGATTGGGATATGTTCCAAACAAGTCACCTATACGCGTCATTCCACGCTG CAGCTCGATGTGTATCCGGAGGGCCAATTTATATCACCGATGAGCCGGGTAAACATGACCTGGCCCTACTCAATC AGATAACTGCACCTACTGTCAAAGGAATCACGGTGATCTTGCGTCCTAGTGTCATTGGACGCACGATAGACATAT ACAACGACTACGACGAAGGACGTGTTCTGCGCGTTGGAAGCTATACCGGCTGGGCCAAGACTGGAAGTGGAATCT TAGGCGTTTTCAATATTCAATCTGCCGAGGCCTCGATCATAGTCCCATTGATGGATTTCCCAGGAATTCACGAGG ACTCCGAAGGCCAGTATATTGTGCGTGCACACAGCAGCGGTAGGATATCGCATCGCATGCGGCCGTTGAGCCGGG AATCTCTGGTATCAGTTGTTCTGGGGCCAAAGGGCTGGGAGATCCTCACTGCTTACCCGACTCAGTCGTTCATGC TGACGGGCAGCCATGACGGCAACTCTTCTGGTGACCGTCTGACACACGTGGCTGTGCTCGGTCTTTTGGGAAAGA TGACTGGTGTAGCGGCTATAGTGACTTCAGATATATCTGTTGTTGAGAATGGTCGTTTACGAGTTGACATCAGCT TAAAAGCGCTGGGCACTCTGGGGATCTATTTCTCGGATCTTCAAGACAGGAGCATTGCACGAAACTTCATGGTCA TGATTTTGGGACGACCAGTTCCACAGAATACGGTATGGAAACAAGGTGGAGAGAATGCTAATGTCCTGGCAATCG ATATATTGGCGGCATGGAAATCGATGAAATTGGACAGTGGATGGAGTAACGAGGCATTCGTGCAGGTTTTTGTGA GTTGA |