© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6330.t1 |
| Gene name | |
| Location | scaffold_16:537075..537985 |
| Strand | + |
| Gene length (bp) | 910 |
| Transcript length (bp) | 798 |
| Coding sequence length (bp) | 798 |
| Protein length (aa) | 266 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 91 | 113 | 22 |
| 2 | 128 | 150 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 36.09 | 17.49 | 54.70 |
| 5d_25C | Five days - 25 degrees Celsius | 37.46 | 18.33 | 56.59 |
| 7d_25C | Seven days - 25 degrees Celsius | 32.81 | 15.55 | 50.07 |
| 10d_25C | Ten days - 25 degrees Celsius | 24.48 | 10.67 | 38.28 |
| 7d_15C | Seven days - 15 degrees Celsius | 27.03 | 12.04 | 42.02 |
| 7d_30C | Seven days - 30 degrees Celsius | 28.55 | 13.00 | 44.09 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.932889 | no |
| 3d_25C | 7d_25C | 0.815551 | no |
| 3d_25C | 7d_15C | 0.397819 | no |
| 3d_25C | 7d_30C | 0.496197 | no |
| 3d_25C | 10d_25C | 0.217304 | no |
| 5d_25C | 7d_25C | 0.720186 | no |
| 5d_25C | 7d_15C | 0.303848 | no |
| 5d_25C | 7d_30C | 0.401423 | no |
| 5d_25C | 10d_25C | 0.154982 | no |
| 7d_25C | 7d_15C | 0.601532 | no |
| 7d_25C | 7d_30C | 0.719377 | no |
| 7d_25C | 10d_25C | 0.380044 | no |
| 7d_15C | 7d_30C | 0.907934 | no |
| 7d_15C | 10d_25C | 0.825761 | no |
| 7d_30C | 10d_25C | 0.699330 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6330.t1 MRLQILLHPQLRTTLPECAQRSLRRNVWVRFKSQIPRPSQKHLSPLPKSKETVPATRSPVTRTLTPPKTTTRTGP PERILVYYGGTGRAIFLGTLRITTVLLFGAACLLVAPACSVADDYPWYSTPAVIAAGALPMIFVSYTAAPYVNFI HLALPAFARKSREAAVQYAKDLPPTAVLYLTSMRFNTIPRQTAVRIGDLVPFKETLRPVTFQNLNPSPQRWWQGR APTQFYTGTHSKPGRQTSAFYPELWNGIYEQIQKAKSQPR* |
| Coding | >Pro_DTO377G3_2|g6330.t1 ATGCGACTTCAAATTTTACTTCACCCTCAATTACGCACAACTCTACCAGAGTGTGCCCAGCGCAGTCTTCGGAGG AACGTCTGGGTTCGGTTCAAGTCACAGATCCCTCGGCCATCGCAGAAGCATCTTTCGCCATTACCCAAGTCGAAG GAAACCGTCCCAGCTACGCGTTCTCCAGTAACAAGGACGCTCACACCGCCAAAGACAACCACCAGGACAGGACCA CCTGAACGTATCTTAGTGTACTACGGAGGAACGGGTAGAGCTATCTTTCTGGGGACGCTACGAATCACCACGGTA CTCCTATTTGGTGCAGCGTGTCTACTCGTTGCACCAGCATGCTCCGTGGCTGACGATTACCCCTGGTATAGCACA CCTGCGGTGATTGCCGCTGGTGCCCTCCCGATGATATTTGTCTCCTATACTGCGGCGCCATATGTAAATTTCATC CATCTGGCGTTGCCGGCCTTTGCGAGGAAGTCCCGTGAAGCTGCCGTCCAGTATGCAAAAGACCTGCCTCCGACG GCCGTGCTGTATCTCACCAGCATGCGATTCAACACCATTCCTCGGCAAACAGCTGTTCGAATAGGAGACCTCGTT CCATTTAAAGAGACCTTGCGGCCCGTCACATTCCAGAATCTGAATCCGTCGCCGCAACGATGGTGGCAGGGCAGA GCTCCGACCCAGTTCTATACTGGAACTCACAGCAAACCCGGGAGACAAACATCGGCTTTCTACCCAGAATTGTGG AATGGAATCTACGAGCAAATTCAGAAAGCCAAGTCGCAGCCTCGTTGA |
| Transcript | >Pro_DTO377G3_2|g6330.t1 ATGCGACTTCAAATTTTACTTCACCCTCAATTACGCACAACTCTACCAGAGTGTGCCCAGCGCAGTCTTCGGAGG AACGTCTGGGTTCGGTTCAAGTCACAGATCCCTCGGCCATCGCAGAAGCATCTTTCGCCATTACCCAAGTCGAAG GAAACCGTCCCAGCTACGCGTTCTCCAGTAACAAGGACGCTCACACCGCCAAAGACAACCACCAGGACAGGACCA CCTGAACGTATCTTAGTGTACTACGGAGGAACGGGTAGAGCTATCTTTCTGGGGACGCTACGAATCACCACGGTA CTCCTATTTGGTGCAGCGTGTCTACTCGTTGCACCAGCATGCTCCGTGGCTGACGATTACCCCTGGTATAGCACA CCTGCGGTGATTGCCGCTGGTGCCCTCCCGATGATATTTGTCTCCTATACTGCGGCGCCATATGTAAATTTCATC CATCTGGCGTTGCCGGCCTTTGCGAGGAAGTCCCGTGAAGCTGCCGTCCAGTATGCAAAAGACCTGCCTCCGACG GCCGTGCTGTATCTCACCAGCATGCGATTCAACACCATTCCTCGGCAAACAGCTGTTCGAATAGGAGACCTCGTT CCATTTAAAGAGACCTTGCGGCCCGTCACATTCCAGAATCTGAATCCGTCGCCGCAACGATGGTGGCAGGGCAGA GCTCCGACCCAGTTCTATACTGGAACTCACAGCAAACCCGGGAGACAAACATCGGCTTTCTACCCAGAATTGTGG AATGGAATCTACGAGCAAATTCAGAAAGCCAAGTCGCAGCCTCGTTGA |
| Gene | >Pro_DTO377G3_2|g6330.t1 ATGCGACTTCAAATTTTACTTCACCCTCAATTACGCACAACTCTACCAGAGTGTGCCCAGCGCAGTCTTCGGAGG AACGTCTGGGTTCGGTTCAAGTCACAGATCCCTCGGCCATCGCAGAAGCATCTTTCGCCATTACCCAAGTCGAAG GAAACCGTCCCAGCTACGCGTTCTCCAGTAACAAGGACGCTCACACCGCCAAAGACAACCACCAGGACAGGTACC GTGAACCCTCCCGGCCAGTTGTTAGACGTGCGTGTGCTGAGCTATAGTTACAGGACCACCTGAACGTATCTTAGT GTACTACGGAGGAACGGGTAGAGCTATCTTTCTGGGGACGCTACGAATCACCACGGTACTCCTATTTGGTGCAGC GTGTCTACTCGTTGCACCAGCATGCTCCGTGGCTGACGATTACCCCTGGTATAGCACACCTGCGGGTAAGCTAAT TGAACATCCACATCGCCTGAGCGTCTATGCTGATTTTACCTCAGTGATTGCCGCTGGTGCCCTCCCGATGATATT TGTCTCCTATACTGCGGCGCCATATGTAAATTTCATCCATCTGGCGTTGCCGGCCTTTGCGAGGAAGTCCCGTGA AGCTGCCGTCCAGTATGCAAAAGACCTGCCTCCGACGGCCGTGCTGTATCTCACCAGCATGCGATTCAACACCAT TCCTCGGCAAACAGCTGTTCGAATAGGAGACCTCGTTCCATTTAAAGAGACCTTGCGGCCCGTCACATTCCAGAA TCTGAATCCGTCGCCGCAACGATGGTGGCAGGGCAGAGCTCCGACCCAGTTCTATACTGGAACTCACAGCAAACC CGGGAGACAAACATCGGCTTTCTACCCAGAATTGTGGAATGGAATCTACGAGCAAATTCAGAAAGCCAAGTCGCA GCCTCGTTGA |