Fungal Genomics

at Utrecht University

General Properties

Protein ID	Pro_DTO377G3_2\|g6326.t1
Gene name
Location	scaffold_16:530009..531485
Strand	-
Gene length (bp)	1476
Transcript length (bp)	1365
Coding sequence length (bp)	1365
Protein length (aa)	455

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF13298	LigD_N	DNA polymerase Ligase (LigD)	4.3E-37	128	266

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 12	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	14.34	6.46	22.22
5d_25C	Five days - 25 degrees Celsius	12.62	5.48	19.77
7d_25C	Seven days - 25 degrees Celsius	8.74	3.33	14.15
10d_25C	Ten days - 25 degrees Celsius	7.98	2.87	13.09
7d_15C	Seven days - 15 degrees Celsius	12.05	5.01	19.09
7d_30C	Seven days - 30 degrees Celsius	10.00	3.97	16.04

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.756339	no
3d_25C	7d_25C	0.122548	no
3d_25C	7d_15C	0.655193	no
3d_25C	7d_30C	0.299168	no
3d_25C	10d_25C	0.074263	no
5d_25C	7d_25C	0.295993	no
5d_25C	7d_15C	0.924786	no
5d_25C	7d_30C	0.552574	no
5d_25C	10d_25C	0.191363	no
7d_25C	7d_15C	0.380548	no
7d_25C	7d_30C	0.770954	no
7d_25C	10d_25C	0.860063	no
7d_15C	7d_30C	0.655610	no
7d_15C	10d_25C	0.261171	no
7d_30C	10d_25C	0.605394	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g6326.t1 MKRACSPETSPDHELRQEIPLNDERPILMSLNTPVSPPKKRSSIKCVKDGDGRDSIPPNVSQLNTSPSLAAIEAG QVEVIDHLSTISAKLKEYVRPPPKQSLPRLPIKEWIELYRRNEHPEGRHFVIHQHDHPIAGPHYDLRLQFSETSS VSWSVMYGMPGDPNSQRLNRNATETRIHCLWNHLIETASYKTGSLIIWDTGEYEILPYQMDQSGPETDDSRSENS EDSHVAPEEQISDSAKLREAFQNRKIRLRLHGTRLPKDYTIILRMDKTTDFARPIREGPKRRRRHPSRPTVPQAP STSDSGSPSPPPGQQESSGDPTPQRSQPESQTGPARHARPDDTHTADIEIQRNNAYPGSNNTIGSIHQRRWYLSL DREASGFEPIIRNPSEGSKERGRKRTWIPKPVGQGFEPFYVHGPEAERSIITARLGRDVLDDEAVDEFVPRRGWR PVLH*
Coding	>Pro_DTO377G3_2\|g6326.t1 ATGAAACGCGCTTGCAGCCCAGAAACTAGCCCAGACCATGAGCTGAGACAAGAAATTCCGCTAAATGACGAGCGT CCAATTCTCATGAGCCTTAATACGCCTGTCTCTCCGCCAAAAAAGAGATCATCCATCAAATGTGTCAAGGATGGA GATGGAAGAGACTCCATCCCGCCGAACGTATCACAACTAAACACTTCACCCAGCCTCGCTGCCATCGAAGCAGGC CAGGTTGAAGTGATCGACCATCTGAGCACGATTTCCGCAAAGCTCAAAGAATACGTTCGCCCACCTCCAAAACAG TCATTACCACGGCTGCCCATCAAAGAATGGATCGAGCTGTATAGACGAAACGAGCACCCAGAAGGACGTCATTTC GTCATTCATCAACATGACCATCCCATCGCAGGGCCGCATTACGATCTTCGCCTCCAGTTCTCAGAGACTAGCTCT GTGAGTTGGTCGGTTATGTATGGGATGCCTGGGGATCCGAATAGCCAGCGATTAAACCGGAATGCAACTGAAACT CGAATCCATTGTCTATGGAATCATCTCATTGAAACGGCTTCCTACAAAACGGGGAGTCTTATTATCTGGGATACT GGAGAATATGAAATTCTACCTTATCAAATGGACCAATCTGGCCCGGAGACCGATGATTCTCGATCAGAGAACTCC GAAGATAGTCACGTTGCACCGGAAGAGCAGATCTCAGATAGTGCCAAGTTGCGAGAAGCTTTTCAGAATCGCAAA ATCCGACTCCGACTTCATGGAACCCGTTTACCAAAGGACTACACTATTATTCTGCGGATGGATAAAACAACCGAT TTCGCGAGGCCGATCCGCGAAGGCCCCAAACGGCGTCGTCGACACCCATCCAGGCCAACGGTACCACAAGCGCCG TCGACCTCGGACTCTGGATCGCCTTCGCCGCCACCTGGTCAGCAAGAATCAAGTGGGGATCCAACACCGCAACGA TCTCAACCCGAGTCTCAGACCGGCCCGGCTAGGCATGCACGTCCAGACGATACCCACACCGCCGACATTGAAATC CAAAGAAACAACGCCTACCCAGGGTCCAACAACACGATCGGCTCGATCCACCAACGGCGGTGGTACCTCAGTTTA GACCGGGAAGCTTCTGGATTTGAGCCGATCATAAGAAATCCAAGTGAGGGGTCGAAGGAAAGAGGCAGGAAAAGA ACGTGGATCCCTAAACCCGTCGGACAAGGCTTCGAGCCGTTTTACGTGCACGGACCGGAGGCTGAGCGGAGTATT ATTACGGCGCGATTGGGGCGCGACGTCTTGGATGACGAGGCCGTGGATGAGTTTGTGCCGAGACGCGGGTGGAGG CCGGTCCTGCATTAG
Transcript	>Pro_DTO377G3_2\|g6326.t1 ATGAAACGCGCTTGCAGCCCAGAAACTAGCCCAGACCATGAGCTGAGACAAGAAATTCCGCTAAATGACGAGCGT CCAATTCTCATGAGCCTTAATACGCCTGTCTCTCCGCCAAAAAAGAGATCATCCATCAAATGTGTCAAGGATGGA GATGGAAGAGACTCCATCCCGCCGAACGTATCACAACTAAACACTTCACCCAGCCTCGCTGCCATCGAAGCAGGC CAGGTTGAAGTGATCGACCATCTGAGCACGATTTCCGCAAAGCTCAAAGAATACGTTCGCCCACCTCCAAAACAG TCATTACCACGGCTGCCCATCAAAGAATGGATCGAGCTGTATAGACGAAACGAGCACCCAGAAGGACGTCATTTC GTCATTCATCAACATGACCATCCCATCGCAGGGCCGCATTACGATCTTCGCCTCCAGTTCTCAGAGACTAGCTCT GTGAGTTGGTCGGTTATGTATGGGATGCCTGGGGATCCGAATAGCCAGCGATTAAACCGGAATGCAACTGAAACT CGAATCCATTGTCTATGGAATCATCTCATTGAAACGGCTTCCTACAAAACGGGGAGTCTTATTATCTGGGATACT GGAGAATATGAAATTCTACCTTATCAAATGGACCAATCTGGCCCGGAGACCGATGATTCTCGATCAGAGAACTCC GAAGATAGTCACGTTGCACCGGAAGAGCAGATCTCAGATAGTGCCAAGTTGCGAGAAGCTTTTCAGAATCGCAAA ATCCGACTCCGACTTCATGGAACCCGTTTACCAAAGGACTACACTATTATTCTGCGGATGGATAAAACAACCGAT TTCGCGAGGCCGATCCGCGAAGGCCCCAAACGGCGTCGTCGACACCCATCCAGGCCAACGGTACCACAAGCGCCG TCGACCTCGGACTCTGGATCGCCTTCGCCGCCACCTGGTCAGCAAGAATCAAGTGGGGATCCAACACCGCAACGA TCTCAACCCGAGTCTCAGACCGGCCCGGCTAGGCATGCACGTCCAGACGATACCCACACCGCCGACATTGAAATC CAAAGAAACAACGCCTACCCAGGGTCCAACAACACGATCGGCTCGATCCACCAACGGCGGTGGTACCTCAGTTTA GACCGGGAAGCTTCTGGATTTGAGCCGATCATAAGAAATCCAAGTGAGGGGTCGAAGGAAAGAGGCAGGAAAAGA ACGTGGATCCCTAAACCCGTCGGACAAGGCTTCGAGCCGTTTTACGTGCACGGACCGGAGGCTGAGCGGAGTATT ATTACGGCGCGATTGGGGCGCGACGTCTTGGATGACGAGGCCGTGGATGAGTTTGTGCCGAGACGCGGGTGGAGG CCGGTCCTGCATTAG
Gene	>Pro_DTO377G3_2\|g6326.t1 ATGAAACGCGCTTGCAGCCCAGAAACTAGCCCAGACCATGAGCTGAGACAAGAAATTCCGCTAAATGACGAGCGT CCAATTCTCATGAGCCTTAATACGCCTGTCTCTCCGCCAAAAAAGAGATCATCCATCAAATGTGTCAAGGATGGA GATGGAAGAGACTCCATCCCGCCGAACGTATCACAACTAAACACTTCACCCAGCCTCGCTGCCATCGAAGCAGGC CAGGTTGAAGTGATCGACCATCTGAGCACGATTTCCGCAAAGCTCAAAGAATACGTTCGCCCACCTCCAAAACAG TCATTACCACGGCTGCCCATCAAAGAATGGATCGAGCTGTATAGACGAAACGAGCACCCAGAAGGACGTCATTTC GTCATTCATCAACATGACCATCCCATCGCAGGGCCGCATTACGATCTTCGCCTCCAGTTCTCAGAGACTAGCTCT GTGAGTTGGTCGGTTATGTATGGGATGCCTGGGGATCCGAATAGCCAGCGATTAAACCGGAATGCAACTGAAACT CGAATCCATTGTCTATGGGTGGGTTGATGATCTGAGATGGTATAATAGCAATACTTACATCTTCACAGAATCATC TCATTGAAACGGCTTCCTACAAAACGGGGAGTCTTATTATCTGGGATACTGGAGAATATGAAATTCTACCTTATC AAATGGACCAATCTGGCCCGGAGACCGATGATTCTCGATCAGAGAACTCCGAAGATAGTCACGTTGCACCGGAAG AGCAGATCTCAGATAGTGCCAAGTTGCGAGAAGCTTTTCAGAATGTAGGTATATCCCTGTACCATGGAGACACTG AATAGACTCCTCTAACACTGAAACACCAAGCGCAAAATCCGACTCCGACTTCATGGAACCCGTTTACCAAAGGAC TACACTATTATTCTGCGGATGGATAAAACAACCGATTTCGCGAGGCCGATCCGCGAAGGCCCCAAACGGCGTCGT CGACACCCATCCAGGCCAACGGTACCACAAGCGCCGTCGACCTCGGACTCTGGATCGCCTTCGCCGCCACCTGGT CAGCAAGAATCAAGTGGGGATCCAACACCGCAACGATCTCAACCCGAGTCTCAGACCGGCCCGGCTAGGCATGCA CGTCCAGACGATACCCACACCGCCGACATTGAAATCCAAAGAAACAACGCCTACCCAGGGTCCAACAACACGATC GGCTCGATCCACCAACGGCGGTGGTACCTCAGTTTAGACCGGGAAGCTTCTGGATTTGAGCCGATCATAAGAAAT CCAAGTGAGGGGTCGAAGGAAAGAGGCAGGAAAAGAACGTGGATCCCTAAACCCGTCGGACAAGGCTTCGAGCCG TTTTACGTGCACGGACCGGAGGCTGAGCGGAGTATTATTACGGCGCGATTGGGGCGCGACGTCTTGGATGACGAG GCCGTGGATGAGTTTGTGCCGAGACGCGGGTGGAGGCCGGTCCTGCATTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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