Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g6326.t1
Gene name
Locationscaffold_16:530009..531485
Strand-
Gene length (bp)1476
Transcript length (bp)1365
Coding sequence length (bp)1365
Protein length (aa) 455

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13298 LigD_N DNA polymerase Ligase (LigD) 5.1E-37 128 266

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g6326.t1
MKRACSPETSPDHELRQEIPLNDERPILMSLNTPVSPPKKRSSIKCVKDGDGRDSIPPNVSQLNTSPSLAAIEAG
QVEVIDHLSTISAKLKEYVRPPPKQSLPRLPIKEWIELYRRNEHPEGRHFVIHQHDHPIAGPHYDLRLQFSETSS
VSWSVMYGMPGDPNSQRLNRNATETRIHCLWNHLIETASYKTGSLIIWDTGEYEILPYQMDQSGPETDDSRSENS
EDSHVAPEEQISDSAKLREAFQNRKIRLRLHGTRLPKDYTIILRMDKTTDFARPIREGPKRRRRHPSRPTVPQAP
STSDSGSPSPPPGQQESSGDPTPQRSQPESQTGPARHARPDDTHTADIEIQRNNAYPGSNNTIGSIHQRRWYLSL
DREASGFEPIIRNPSEGSKERGRKRTWIPKPVGQGFEPFYVHGPEAERSIITARLGRDVLDDEAVDEFVPRRGWR
PVLH*
Coding >Pro_DTO377G3_2|g6326.t1
ATGAAACGCGCTTGCAGCCCAGAAACTAGCCCAGACCATGAGCTGAGACAAGAAATTCCGCTAAATGACGAGCGT
CCAATTCTCATGAGCCTTAATACGCCTGTCTCTCCGCCAAAAAAGAGATCATCCATCAAATGTGTCAAGGATGGA
GATGGAAGAGACTCCATCCCGCCGAACGTATCACAACTAAACACTTCACCCAGCCTCGCTGCCATCGAAGCAGGC
CAGGTTGAAGTGATCGACCATCTGAGCACGATTTCCGCAAAGCTCAAAGAATACGTTCGCCCACCTCCAAAACAG
TCATTACCACGGCTGCCCATCAAAGAATGGATCGAGCTGTATAGACGAAACGAGCACCCAGAAGGACGTCATTTC
GTCATTCATCAACATGACCATCCCATCGCAGGGCCGCATTACGATCTTCGCCTCCAGTTCTCAGAGACTAGCTCT
GTGAGTTGGTCGGTTATGTATGGGATGCCTGGGGATCCGAATAGCCAGCGATTAAACCGGAATGCAACTGAAACT
CGAATCCATTGTCTATGGAATCATCTCATTGAAACGGCTTCCTACAAAACGGGGAGTCTTATTATCTGGGATACT
GGAGAATATGAAATTCTACCTTATCAAATGGACCAATCTGGCCCGGAGACCGATGATTCTCGATCAGAGAACTCC
GAAGATAGTCACGTTGCACCGGAAGAGCAGATCTCAGATAGTGCCAAGTTGCGAGAAGCTTTTCAGAATCGCAAA
ATCCGACTCCGACTTCATGGAACCCGTTTACCAAAGGACTACACTATTATTCTGCGGATGGATAAAACAACCGAT
TTCGCGAGGCCGATCCGCGAAGGCCCCAAACGGCGTCGTCGACACCCATCCAGGCCAACGGTACCACAAGCGCCG
TCGACCTCGGACTCTGGATCGCCTTCGCCGCCACCTGGTCAGCAAGAATCAAGTGGGGATCCAACACCGCAACGA
TCTCAACCCGAGTCTCAGACCGGCCCGGCTAGGCATGCACGTCCAGACGATACCCACACCGCCGACATTGAAATC
CAAAGAAACAACGCCTACCCAGGGTCCAACAACACGATCGGCTCGATCCACCAACGGCGGTGGTACCTCAGTTTA
GACCGGGAAGCTTCTGGATTTGAGCCGATCATAAGAAATCCAAGTGAGGGGTCGAAGGAAAGAGGCAGGAAAAGA
ACGTGGATCCCTAAACCCGTCGGACAAGGCTTCGAGCCGTTTTACGTGCACGGACCGGAGGCTGAGCGGAGTATT
ATTACGGCGCGATTGGGGCGCGACGTCTTGGATGACGAGGCCGTGGATGAGTTTGTGCCGAGACGCGGGTGGAGG
CCGGTCCTGCATTAG
Transcript >Pro_DTO377G3_2|g6326.t1
ATGAAACGCGCTTGCAGCCCAGAAACTAGCCCAGACCATGAGCTGAGACAAGAAATTCCGCTAAATGACGAGCGT
CCAATTCTCATGAGCCTTAATACGCCTGTCTCTCCGCCAAAAAAGAGATCATCCATCAAATGTGTCAAGGATGGA
GATGGAAGAGACTCCATCCCGCCGAACGTATCACAACTAAACACTTCACCCAGCCTCGCTGCCATCGAAGCAGGC
CAGGTTGAAGTGATCGACCATCTGAGCACGATTTCCGCAAAGCTCAAAGAATACGTTCGCCCACCTCCAAAACAG
TCATTACCACGGCTGCCCATCAAAGAATGGATCGAGCTGTATAGACGAAACGAGCACCCAGAAGGACGTCATTTC
GTCATTCATCAACATGACCATCCCATCGCAGGGCCGCATTACGATCTTCGCCTCCAGTTCTCAGAGACTAGCTCT
GTGAGTTGGTCGGTTATGTATGGGATGCCTGGGGATCCGAATAGCCAGCGATTAAACCGGAATGCAACTGAAACT
CGAATCCATTGTCTATGGAATCATCTCATTGAAACGGCTTCCTACAAAACGGGGAGTCTTATTATCTGGGATACT
GGAGAATATGAAATTCTACCTTATCAAATGGACCAATCTGGCCCGGAGACCGATGATTCTCGATCAGAGAACTCC
GAAGATAGTCACGTTGCACCGGAAGAGCAGATCTCAGATAGTGCCAAGTTGCGAGAAGCTTTTCAGAATCGCAAA
ATCCGACTCCGACTTCATGGAACCCGTTTACCAAAGGACTACACTATTATTCTGCGGATGGATAAAACAACCGAT
TTCGCGAGGCCGATCCGCGAAGGCCCCAAACGGCGTCGTCGACACCCATCCAGGCCAACGGTACCACAAGCGCCG
TCGACCTCGGACTCTGGATCGCCTTCGCCGCCACCTGGTCAGCAAGAATCAAGTGGGGATCCAACACCGCAACGA
TCTCAACCCGAGTCTCAGACCGGCCCGGCTAGGCATGCACGTCCAGACGATACCCACACCGCCGACATTGAAATC
CAAAGAAACAACGCCTACCCAGGGTCCAACAACACGATCGGCTCGATCCACCAACGGCGGTGGTACCTCAGTTTA
GACCGGGAAGCTTCTGGATTTGAGCCGATCATAAGAAATCCAAGTGAGGGGTCGAAGGAAAGAGGCAGGAAAAGA
ACGTGGATCCCTAAACCCGTCGGACAAGGCTTCGAGCCGTTTTACGTGCACGGACCGGAGGCTGAGCGGAGTATT
ATTACGGCGCGATTGGGGCGCGACGTCTTGGATGACGAGGCCGTGGATGAGTTTGTGCCGAGACGCGGGTGGAGG
CCGGTCCTGCATTAG
Gene >Pro_DTO377G3_2|g6326.t1
ATGAAACGCGCTTGCAGCCCAGAAACTAGCCCAGACCATGAGCTGAGACAAGAAATTCCGCTAAATGACGAGCGT
CCAATTCTCATGAGCCTTAATACGCCTGTCTCTCCGCCAAAAAAGAGATCATCCATCAAATGTGTCAAGGATGGA
GATGGAAGAGACTCCATCCCGCCGAACGTATCACAACTAAACACTTCACCCAGCCTCGCTGCCATCGAAGCAGGC
CAGGTTGAAGTGATCGACCATCTGAGCACGATTTCCGCAAAGCTCAAAGAATACGTTCGCCCACCTCCAAAACAG
TCATTACCACGGCTGCCCATCAAAGAATGGATCGAGCTGTATAGACGAAACGAGCACCCAGAAGGACGTCATTTC
GTCATTCATCAACATGACCATCCCATCGCAGGGCCGCATTACGATCTTCGCCTCCAGTTCTCAGAGACTAGCTCT
GTGAGTTGGTCGGTTATGTATGGGATGCCTGGGGATCCGAATAGCCAGCGATTAAACCGGAATGCAACTGAAACT
CGAATCCATTGTCTATGGGTGGGTTGATGATCTGAGATGGTATAATAGCAATACTTACATCTTCACAGAATCATC
TCATTGAAACGGCTTCCTACAAAACGGGGAGTCTTATTATCTGGGATACTGGAGAATATGAAATTCTACCTTATC
AAATGGACCAATCTGGCCCGGAGACCGATGATTCTCGATCAGAGAACTCCGAAGATAGTCACGTTGCACCGGAAG
AGCAGATCTCAGATAGTGCCAAGTTGCGAGAAGCTTTTCAGAATGTAGGTATATCCCTGTACCATGGAGACACTG
AATAGACTCCTCTAACACTGAAACACCAAGCGCAAAATCCGACTCCGACTTCATGGAACCCGTTTACCAAAGGAC
TACACTATTATTCTGCGGATGGATAAAACAACCGATTTCGCGAGGCCGATCCGCGAAGGCCCCAAACGGCGTCGT
CGACACCCATCCAGGCCAACGGTACCACAAGCGCCGTCGACCTCGGACTCTGGATCGCCTTCGCCGCCACCTGGT
CAGCAAGAATCAAGTGGGGATCCAACACCGCAACGATCTCAACCCGAGTCTCAGACCGGCCCGGCTAGGCATGCA
CGTCCAGACGATACCCACACCGCCGACATTGAAATCCAAAGAAACAACGCCTACCCAGGGTCCAACAACACGATC
GGCTCGATCCACCAACGGCGGTGGTACCTCAGTTTAGACCGGGAAGCTTCTGGATTTGAGCCGATCATAAGAAAT
CCAAGTGAGGGGTCGAAGGAAAGAGGCAGGAAAAGAACGTGGATCCCTAAACCCGTCGGACAAGGCTTCGAGCCG
TTTTACGTGCACGGACCGGAGGCTGAGCGGAGTATTATTACGGCGCGATTGGGGCGCGACGTCTTGGATGACGAG
GCCGTGGATGAGTTTGTGCCGAGACGCGGGTGGAGGCCGGTCCTGCATTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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