© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6320.t1 |
| Gene name | |
| Location | scaffold_16:514677..516054 |
| Strand | + |
| Gene length (bp) | 1377 |
| Transcript length (bp) | 1209 |
| Coding sequence length (bp) | 1209 |
| Protein length (aa) | 403 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 34 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 34 | 19 |
| 2 | 200 | 222 | 22 |
| 3 | 232 | 254 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 4.37 | 1.20 | 7.54 |
| 5d_25C | Five days - 25 degrees Celsius | 6.04 | 1.94 | 10.15 |
| 7d_25C | Seven days - 25 degrees Celsius | 8.78 | 3.16 | 14.41 |
| 10d_25C | Ten days - 25 degrees Celsius | 8.30 | 3.01 | 13.58 |
| 7d_15C | Seven days - 15 degrees Celsius | 4.35 | 1.06 | 7.64 |
| 7d_30C | Seven days - 30 degrees Celsius | 22.34 | 10.85 | 33.82 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.487327 | no |
| 3d_25C | 7d_25C | 0.065980 | no |
| 3d_25C | 7d_15C | 0.995761 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.096313 | no |
| 5d_25C | 7d_25C | 0.355187 | no |
| 5d_25C | 7d_15C | 0.490042 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.457726 | no |
| 7d_25C | 7d_15C | 0.070025 | no |
| 7d_25C | 7d_30C | 0.002297 | yes |
| 7d_25C | 10d_25C | 0.918347 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.107450 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6320.t1 MIGLSGDSSLSSKMLAFVLAIVLVNSPALVVFGLKTTPGSPCTDVCGTTTNTTSSEIACLDQSYNQTSVGKSFKN CISCQLDSEFNDAETGESDVNWGLYNLRYAFSTCVFGSPDSISNVSSPCPVACDGVRLAVETDVKSPDTSNLDSW CESPSFADNVVNTCEFCYNLTTTQVYMANFLESIRYNCHFKTVTGKTFDIAPTRIFSQSLLPSSLSLTTPTAKSS NLNLGVVIAVPIIAFLIIVSSLAICCFFFIRHRRKKARRNRNSPHLYNHWNDGSPISAQQHQQAWAEQQMYNSGG YGHGSGFAFVDNDGRGQELAYGPGQDQHYQSQQYQQHFQGQDKSTFTQDIIEEPAPQEYQQQRAQVPARSQVFDP DQKGQHVQDPVHPQVLDPDRKDSQQWQ* |
| Coding | >Pro_DTO377G3_2|g6320.t1 ATGATCGGGTTAAGTGGCGACAGTTCACTTTCCTCTAAAATGCTGGCTTTTGTCCTGGCTATAGTTTTGGTGAAT AGCCCAGCTCTAGTGGTTTTCGGGTTGAAAACTACACCGGGTTCGCCCTGCACTGATGTGTGTGGTACAACGACC AACACTACATCATCCGAGATTGCGTGTTTGGATCAATCATACAACCAGACATCAGTAGGGAAAAGTTTCAAAAAC TGCATCTCTTGCCAGTTGGACAGCGAGTTCAACGATGCGGAGACCGGAGAATCAGACGTGAACTGGGGACTCTAT AACCTGCGATATGCTTTCTCGACGTGTGTGTTTGGATCTCCAGACTCGATCTCGAATGTTTCGTCACCGTGCCCA GTCGCATGCGATGGCGTGCGTTTGGCAGTTGAAACAGACGTTAAATCCCCAGACACATCGAATCTGGACTCGTGG TGTGAAAGCCCGTCGTTTGCAGATAATGTAGTCAACACCTGCGAGTTCTGCTACAACTTGACAACCACCCAAGTT TACATGGCAAACTTCCTCGAGTCCATCCGCTACAACTGCCATTTCAAGACAGTAACGGGCAAGACCTTCGACATA GCCCCAACGAGAATCTTCAGCCAATCGCTCCTCCCCTCAAGTCTCTCTCTCACAACGCCCACTGCAAAATCCTCA AACCTGAATCTGGGAGTGGTGATCGCCGTGCCAATCATAGCATTCTTAATTATCGTCTCATCCCTCGCGATATGT TGCTTTTTCTTCATCCGGCACCGACGCAAGAAGGCCCGTCGGAACCGCAACTCACCTCATCTGTACAACCACTGG AACGATGGGTCGCCGATCAGCGCGCAACAGCACCAGCAGGCCTGGGCTGAGCAACAGATGTATAATTCCGGCGGG TATGGCCACGGTTCAGGCTTTGCATTTGTTGATAATGATGGCCGCGGACAGGAGCTTGCCTATGGCCCTGGCCAG GACCAACATTATCAAAGCCAGCAGTATCAGCAGCACTTCCAAGGTCAGGACAAGTCAACCTTCACGCAGGATATT ATCGAAGAGCCTGCACCACAGGAATACCAGCAGCAGCGTGCTCAGGTTCCTGCTCGCTCTCAGGTCTTTGACCCG GATCAGAAGGGCCAGCATGTTCAGGATCCTGTTCATCCGCAGGTCTTGGACCCGGATCGAAAGGACTCTCAGCAG TGGCAGTGA |
| Transcript | >Pro_DTO377G3_2|g6320.t1 ATGATCGGGTTAAGTGGCGACAGTTCACTTTCCTCTAAAATGCTGGCTTTTGTCCTGGCTATAGTTTTGGTGAAT AGCCCAGCTCTAGTGGTTTTCGGGTTGAAAACTACACCGGGTTCGCCCTGCACTGATGTGTGTGGTACAACGACC AACACTACATCATCCGAGATTGCGTGTTTGGATCAATCATACAACCAGACATCAGTAGGGAAAAGTTTCAAAAAC TGCATCTCTTGCCAGTTGGACAGCGAGTTCAACGATGCGGAGACCGGAGAATCAGACGTGAACTGGGGACTCTAT AACCTGCGATATGCTTTCTCGACGTGTGTGTTTGGATCTCCAGACTCGATCTCGAATGTTTCGTCACCGTGCCCA GTCGCATGCGATGGCGTGCGTTTGGCAGTTGAAACAGACGTTAAATCCCCAGACACATCGAATCTGGACTCGTGG TGTGAAAGCCCGTCGTTTGCAGATAATGTAGTCAACACCTGCGAGTTCTGCTACAACTTGACAACCACCCAAGTT TACATGGCAAACTTCCTCGAGTCCATCCGCTACAACTGCCATTTCAAGACAGTAACGGGCAAGACCTTCGACATA GCCCCAACGAGAATCTTCAGCCAATCGCTCCTCCCCTCAAGTCTCTCTCTCACAACGCCCACTGCAAAATCCTCA AACCTGAATCTGGGAGTGGTGATCGCCGTGCCAATCATAGCATTCTTAATTATCGTCTCATCCCTCGCGATATGT TGCTTTTTCTTCATCCGGCACCGACGCAAGAAGGCCCGTCGGAACCGCAACTCACCTCATCTGTACAACCACTGG AACGATGGGTCGCCGATCAGCGCGCAACAGCACCAGCAGGCCTGGGCTGAGCAACAGATGTATAATTCCGGCGGG TATGGCCACGGTTCAGGCTTTGCATTTGTTGATAATGATGGCCGCGGACAGGAGCTTGCCTATGGCCCTGGCCAG GACCAACATTATCAAAGCCAGCAGTATCAGCAGCACTTCCAAGGTCAGGACAAGTCAACCTTCACGCAGGATATT ATCGAAGAGCCTGCACCACAGGAATACCAGCAGCAGCGTGCTCAGGTTCCTGCTCGCTCTCAGGTCTTTGACCCG GATCAGAAGGGCCAGCATGTTCAGGATCCTGTTCATCCGCAGGTCTTGGACCCGGATCGAAAGGACTCTCAGCAG TGGCAGTGA |
| Gene | >Pro_DTO377G3_2|g6320.t1 ATGATCGGGTTAAGTGGCGACAGTTCACTTTCCTCTAAAATGCTGGCTTTTGTCCTGGCTATAGTTTTGGTGAAT AGCCCAGCTCTAGTGGTTTTCGGGTTGAAAACTACACCGGGTTCGCCCTGCACTGATGTGTGTGGTACAACGACC AACACTACATCATCCGAGATTGCGTGTTTGGATCAATCATACAACCAGACATCAGTAGGGAAAAGTTTCAAAAAC TGCATCTCTTGCCAGTTGGACAGCGAGTTCAACGATGCGGAGACCGGAGAATCAGACGTGAACTGGGGACTCTGT ATGTTGTACCACCTTCCGGAGATCGCAGACTGCGGTTCATCGCTCAGGTCTAACCGATCGAACAGATAACCTGCG ATATGCTTTCTCGACGTGTGTGTTTGGATCTCCAGACTCGATCTCGAATGTTTCGTCACCGTGCCCAGTCGCATG CGATGGCGTGCGTTTGGCAGTTGAAACAGACGTTAAATCCCCAGACACATCGAATCTGGACTCGTGGTGTGAAAG CCCGTCGTTTGCAGATAATGTAGTCAACACCTGCGAGTTCTGCTACAACTTGACAACCACCCAAGTTTACATGGC AAACTGTATGTATGCCCTGAAACCCATTCCTATATCATATGATATCAGCAAATCCCAAGCCCAAAGGTTCAAAAA AGCACTACTAAGCATCATCCACCAAACCCAGTCCTCGAGTCCATCCGCTACAACTGCCATTTCAAGACAGTAACG GGCAAGACCTTCGACATAGCCCCAACGAGAATCTTCAGCCAATCGCTCCTCCCCTCAAGTCTCTCTCTCACAACG CCCACTGCAAAATCCTCAAACCTGAATCTGGGAGTGGTGATCGCCGTGCCAATCATAGCATTCTTAATTATCGTC TCATCCCTCGCGATATGTTGCTTTTTCTTCATCCGGCACCGACGCAAGAAGGCCCGTCGGAACCGCAACTCACCT CATCTGTACAACCACTGGAACGATGGGTCGCCGATCAGCGCGCAACAGCACCAGCAGGCCTGGGCTGAGCAACAG ATGTATAATTCCGGCGGGTATGGCCACGGTTCAGGCTTTGCATTTGTTGATAATGATGGCCGCGGACAGGAGCTT GCCTATGGCCCTGGCCAGGACCAACATTATCAAAGCCAGCAGTATCAGCAGCACTTCCAAGGTCAGGACAAGTCA ACCTTCACGCAGGATATTATCGAAGAGCCTGCACCACAGGAATACCAGCAGCAGCGTGCTCAGGTTCCTGCTCGC TCTCAGGTCTTTGACCCGGATCAGAAGGGCCAGCATGTTCAGGATCCTGTTCATCCGCAGGTCTTGGACCCGGAT CGAAAGGACTCTCAGCAGTGGCAGTGA |