© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6317.t1 |
| Gene name | |
| Location | scaffold_16:508320..509702 |
| Strand | + |
| Gene length (bp) | 1382 |
| Transcript length (bp) | 1212 |
| Coding sequence length (bp) | 1212 |
| Protein length (aa) | 404 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF20511 | PMI_typeI_cat | Phosphomannose isomerase type I, catalytic domain | 1.1E-36 | 6 | 150 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 64 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 384.59 | 225.29 | 543.88 |
| 5d_25C | Five days - 25 degrees Celsius | 487.60 | 276.84 | 698.36 |
| 7d_25C | Seven days - 25 degrees Celsius | 551.09 | 304.95 | 797.23 |
| 10d_25C | Ten days - 25 degrees Celsius | 575.86 | 327.03 | 824.69 |
| 7d_15C | Seven days - 15 degrees Celsius | 750.21 | 391.58 | 1108.85 |
| 7d_30C | Seven days - 30 degrees Celsius | 278.24 | 158.02 | 398.46 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.369236 | no |
| 3d_25C | 7d_25C | 0.133183 | no |
| 3d_25C | 7d_15C | 0.003625 | yes |
| 3d_25C | 7d_30C | 0.181913 | no |
| 3d_25C | 10d_25C | 0.081710 | no |
| 5d_25C | 7d_25C | 0.699124 | no |
| 5d_25C | 7d_15C | 0.082173 | no |
| 5d_25C | 7d_30C | 0.012609 | yes |
| 5d_25C | 10d_25C | 0.570394 | no |
| 7d_25C | 7d_15C | 0.254173 | no |
| 7d_25C | 7d_30C | 0.001278 | yes |
| 7d_25C | 10d_25C | 0.903130 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.339234 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6317.t1 MADAVVQLRCGVKNDDWGKKGKESMVAQLWSKTPKNGPIDDSKHYSEMWMGTYPSNPSHLLSTGEHLGDYLKKHP ELVGKSVHDRWGAEIPFLPKILSFSKALPLQIHPDQKLATQLHKEDPKKYGDPMHKPEIAIALSKFELFAGWKPL KDIQSLFELNHLAKYMPKSGQFNDEDLRQVCKALLSAPAKEIAQTMKDLQAIPESQFGAHTYIPSLLGRLAKQYG EGDNGNLVAALLMNYMTLGPGDSVFVPQDSIHAYLEGDIVECMARSDNVINTGFCPAAERDSVELFGQALSFVPH SSEDSLLPRKKSDKGLNGKTDVYAPPISEFSVLCTTLGAGESETHKAILGPSLMIVTKGCGQMKFPENKTAELKE GYVFFVGQGVALDFVTDKGMAVFRAYAE* |
| Coding | >Pro_DTO377G3_2|g6317.t1 ATGGCAGACGCAGTAGTCCAACTTCGGTGTGGTGTCAAGAACGATGACTGGGGGAAGAAAGGAAAAGAGTCGATG GTAGCTCAGCTATGGTCGAAAACCCCCAAAAATGGACCAATTGACGACTCCAAGCACTATTCAGAAATGTGGATG GGCACGTATCCTTCAAACCCATCCCACTTACTTTCCACGGGCGAACACCTTGGGGACTATCTGAAGAAGCACCCT GAGCTAGTGGGCAAGTCCGTCCACGACCGATGGGGTGCCGAGATTCCATTTCTGCCAAAGATTCTATCTTTCAGC AAAGCGCTACCCTTACAAATCCATCCAGACCAGAAACTCGCTACACAATTGCACAAAGAAGATCCTAAGAAGTAT GGCGATCCAATGCACAAGCCGGAGATTGCAATCGCACTCTCAAAATTCGAGCTCTTCGCCGGCTGGAAACCCCTG AAAGACATTCAATCGCTGTTCGAGTTGAACCACCTGGCAAAGTACATGCCCAAATCCGGACAATTCAACGACGAG GACCTACGCCAAGTATGCAAGGCTTTACTCAGCGCACCAGCCAAAGAAATCGCACAGACAATGAAAGATCTACAA GCCATCCCGGAATCCCAGTTCGGCGCACACACCTACATCCCCAGCCTCCTTGGTCGTCTGGCAAAGCAATACGGC GAAGGCGACAACGGAAATCTGGTCGCCGCCCTGCTGATGAACTACATGACCCTAGGACCGGGAGATTCCGTCTTC GTCCCGCAAGACAGCATCCACGCCTACCTCGAGGGTGATATTGTGGAGTGCATGGCGCGGTCGGATAACGTCATC AACACGGGTTTCTGCCCGGCCGCAGAACGCGACAGCGTCGAGTTGTTCGGGCAGGCTCTCAGCTTTGTACCGCAT AGTTCAGAGGATTCGCTGTTGCCGCGTAAAAAGAGCGACAAGGGCTTGAATGGTAAGACGGATGTCTATGCACCG CCCATCAGCGAATTCTCGGTGCTGTGTACTACTCTCGGCGCTGGGGAAAGCGAGACGCACAAGGCTATTCTGGGG CCGAGTCTAATGATTGTTACGAAGGGTTGTGGTCAGATGAAATTCCCCGAGAATAAAACCGCTGAGTTGAAGGAG GGATATGTTTTCTTTGTGGGGCAGGGTGTTGCGCTGGACTTTGTGACCGACAAGGGCATGGCTGTTTTCCGGGCG TATGCGGAGTAA |
| Transcript | >Pro_DTO377G3_2|g6317.t1 ATGGCAGACGCAGTAGTCCAACTTCGGTGTGGTGTCAAGAACGATGACTGGGGGAAGAAAGGAAAAGAGTCGATG GTAGCTCAGCTATGGTCGAAAACCCCCAAAAATGGACCAATTGACGACTCCAAGCACTATTCAGAAATGTGGATG GGCACGTATCCTTCAAACCCATCCCACTTACTTTCCACGGGCGAACACCTTGGGGACTATCTGAAGAAGCACCCT GAGCTAGTGGGCAAGTCCGTCCACGACCGATGGGGTGCCGAGATTCCATTTCTGCCAAAGATTCTATCTTTCAGC AAAGCGCTACCCTTACAAATCCATCCAGACCAGAAACTCGCTACACAATTGCACAAAGAAGATCCTAAGAAGTAT GGCGATCCAATGCACAAGCCGGAGATTGCAATCGCACTCTCAAAATTCGAGCTCTTCGCCGGCTGGAAACCCCTG AAAGACATTCAATCGCTGTTCGAGTTGAACCACCTGGCAAAGTACATGCCCAAATCCGGACAATTCAACGACGAG GACCTACGCCAAGTATGCAAGGCTTTACTCAGCGCACCAGCCAAAGAAATCGCACAGACAATGAAAGATCTACAA GCCATCCCGGAATCCCAGTTCGGCGCACACACCTACATCCCCAGCCTCCTTGGTCGTCTGGCAAAGCAATACGGC GAAGGCGACAACGGAAATCTGGTCGCCGCCCTGCTGATGAACTACATGACCCTAGGACCGGGAGATTCCGTCTTC GTCCCGCAAGACAGCATCCACGCCTACCTCGAGGGTGATATTGTGGAGTGCATGGCGCGGTCGGATAACGTCATC AACACGGGTTTCTGCCCGGCCGCAGAACGCGACAGCGTCGAGTTGTTCGGGCAGGCTCTCAGCTTTGTACCGCAT AGTTCAGAGGATTCGCTGTTGCCGCGTAAAAAGAGCGACAAGGGCTTGAATGGTAAGACGGATGTCTATGCACCG CCCATCAGCGAATTCTCGGTGCTGTGTACTACTCTCGGCGCTGGGGAAAGCGAGACGCACAAGGCTATTCTGGGG CCGAGTCTAATGATTGTTACGAAGGGTTGTGGTCAGATGAAATTCCCCGAGAATAAAACCGCTGAGTTGAAGGAG GGATATGTTTTCTTTGTGGGGCAGGGTGTTGCGCTGGACTTTGTGACCGACAAGGGCATGGCTGTTTTCCGGGCG TATGCGGAGTAA |
| Gene | >Pro_DTO377G3_2|g6317.t1 ATGGCAGACGCAGTAGTCCAACTTCGGTGTGGTGTCAAGGCAAGTATATTTTGCTAACATATCTATTCTCGATTC TGATCTAACCCGGTTTAATAGAACGATGACTGGGGGAAGAAAGGAAAAGAGTCGATGGTAGCTCAGCTATGGTCG AAAACCCCCAAAAATGGACCAATTGACGACTCCAAGCACTATTCAGAAGTAAGCTTTTCGGAATTATTGAACCAA GCACAGTCATGTTGACCTTCGAGCAGATGTGGATGGGCACGTATCCTTCAAACCCATCCCACTTACTTTCCACGG GCGAACACCTTGGGGACTATCTGAAGAAGCACCCTGAGCTAGTGGGCAAGTCCGTCCACGACCGATGGGGTGCCG AGATTCCATTTCTGCCAAAGGCAAGCGCAAAATACAAGAATTATAGTGTGTGGCCATGTAGATAACTAACTTGGA TCTAGATTCTATCTTTCAGCAAAGCGCTACCCTTACAAATCCATCCAGACCAGAAACTCGCTACACAATTGCACA AAGAAGATCCTAAGAAGTATGGCGATCCAATGCACAAGCCGGAGATTGCAATCGCACTCTCAAAATTCGAGCTCT TCGCCGGCTGGAAACCCCTGAAAGACATTCAATCGCTGTTCGAGTTGAACCACCTGGCAAAGTACATGCCCAAAT CCGGACAATTCAACGACGAGGACCTACGCCAAGTATGCAAGGCTTTACTCAGCGCACCAGCCAAAGAAATCGCAC AGACAATGAAAGATCTACAAGCCATCCCGGAATCCCAGTTCGGCGCACACACCTACATCCCCAGCCTCCTTGGTC GTCTGGCAAAGCAATACGGCGAAGGCGACAACGGAAATCTGGTCGCCGCCCTGCTGATGAACTACATGACCCTAG GACCGGGAGATTCCGTCTTCGTCCCGCAAGACAGCATCCACGCCTACCTCGAGGGTGATATTGTGGAGTGCATGG CGCGGTCGGATAACGTCATCAACACGGGTTTCTGCCCGGCCGCAGAACGCGACAGCGTCGAGTTGTTCGGGCAGG CTCTCAGCTTTGTACCGCATAGTTCAGAGGATTCGCTGTTGCCGCGTAAAAAGAGCGACAAGGGCTTGAATGGTA AGACGGATGTCTATGCACCGCCCATCAGCGAATTCTCGGTGCTGTGTACTACTCTCGGCGCTGGGGAAAGCGAGA CGCACAAGGCTATTCTGGGGCCGAGTCTAATGATTGTTACGAAGGGTTGTGGTCAGATGAAATTCCCCGAGAATA AAACCGCTGAGTTGAAGGAGGGATATGTTTTCTTTGTGGGGCAGGGTGTTGCGCTGGACTTTGTGACCGACAAGG GCATGGCTGTTTTCCGGGCGTATGCGGAGTAA |