© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6303.t1 |
| Gene name | |
| Location | scaffold_16:473291..475152 |
| Strand | - |
| Gene length (bp) | 1861 |
| Transcript length (bp) | 1659 |
| Coding sequence length (bp) | 1659 |
| Protein length (aa) | 553 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00441 | Acyl-CoA_dh_1 | Acyl-CoA dehydrogenase, C-terminal domain | 6.0E-41 | 384 | 540 |
| PF02770 | Acyl-CoA_dh_M | Acyl-CoA dehydrogenase, middle domain | 2.5E-22 | 277 | 372 |
| PF02771 | Acyl-CoA_dh_N | Acyl-CoA dehydrogenase, N-terminal domain | 3.1E-19 | 148 | 273 |
| PF00173 | Cyt-b5 | Cytochrome b5-like Heme/Steroid binding domain | 1.3E-18 | 6 | 77 |
| PF08028 | Acyl-CoA_dh_2 | Acyl-CoA dehydrogenase, C-terminal domain | 1.8E-08 | 401 | 524 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 47 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6303.t1 MAKTFSKEDVASHSKGDSPWVIIDEDVYDVSKFQDEHPGGKKILQRVAGKDASKQFWKYHNEGILKKYKGQLQIG SLDTKKTAPAPSAPSAPPAPAPTPKKAAPEPKPTISESSVTPPAIGAPQDPYGELIPFADPSWYQGYASPYFSES HAALRDEVRQWVESEIEPYVTEWDEAKEVPAHIYKQMGERGYLAGLLGVHFPQKHTPYRVKSVSADRWDLFHEML LTDELSRVGSGGLVWNLIGGYGIGCPPLVKFGKKPLVDRILPGILAGDKRICLAITEPDAGSDVANLGCEAKLTE DGKHYIVNGEKKWITNGIYADYFTTAVRTGKDGMNGLSVLLIEREAGGVSTRRMDCQGVWSSGTTYVTFEDVKVP VENLIGKENQGFKVIMTNFNHERIGIVIQCVRFSRVCYEESMKYAHKRKTFGKRLIDHPVIRMKLAHMARQIEAT YNWLENIIFQCQSMEETEAMLKLGGAIAGLKAQSTQCFEFCAREASQIFGGLSYSRGGQGGKIERLYRDVRAYAI PGGSEEIMLDLSMRQSLRVHGMFGMKL* |
| Coding | >Pro_DTO377G3_2|g6303.t1 ATGGCAAAGACATTTAGCAAAGAGGATGTCGCCTCGCATAGCAAGGGTGACAGTCCCTGGGTCATTATCGATGAA GATGTCTACGATGTTTCCAAGTTCCAAGATGAGCACCCTGGTGGAAAGAAGATTCTCCAGCGAGTTGCGGGAAAG GACGCTTCGAAACAGTTCTGGAAATACCACAACGAGGGCATTCTGAAGAAGTACAAGGGTCAGCTGCAGATCGGT TCGTTGGATACAAAGAAGACGGCACCGGCACCCTCGGCACCCTCGGCACCCCCGGCACCAGCGCCAACCCCGAAA AAGGCTGCCCCCGAGCCGAAACCTACCATTTCTGAGTCTTCCGTGACACCACCTGCCATCGGCGCTCCCCAGGAC CCTTATGGAGAGTTGATCCCATTCGCCGACCCCTCGTGGTACCAAGGTTATGCATCCCCCTACTTCAGTGAATCC CATGCCGCACTGCGAGACGAGGTCCGCCAGTGGGTCGAGTCCGAGATCGAGCCATATGTGACCGAATGGGACGAG GCCAAGGAAGTGCCCGCTCACATCTACAAGCAGATGGGCGAGCGGGGCTACCTGGCTGGACTGCTGGGTGTCCAT TTCCCCCAGAAGCACACCCCATACCGCGTGAAGTCTGTGTCAGCAGACCGGTGGGATTTGTTCCACGAGATGCTT CTGACCGACGAGCTGTCGCGTGTCGGCAGCGGTGGTCTGGTGTGGAACCTGATCGGTGGCTACGGAATTGGCTGC CCGCCATTGGTCAAGTTCGGCAAGAAGCCCCTCGTCGACCGAATCCTGCCGGGTATCTTGGCCGGCGACAAGCGC ATTTGCCTCGCCATCACCGAGCCCGATGCGGGTAGTGACGTCGCAAACTTGGGTTGCGAGGCCAAGCTCACCGAG GACGGCAAGCACTACATTGTCAACGGCGAGAAGAAGTGGATCACCAACGGTATCTACGCTGATTATTTCACGACC GCTGTGCGCACCGGCAAGGATGGCATGAACGGCCTCAGCGTGCTGCTTATAGAGCGTGAAGCCGGTGGCGTTAGC ACCCGACGCATGGACTGCCAGGGTGTGTGGTCTAGCGGTACGACCTATGTCACATTCGAGGATGTCAAGGTTCCC GTGGAGAACCTGATCGGCAAGGAGAACCAGGGCTTCAAGGTTATCATGACAAACTTCAATCACGAGCGTATCGGC ATTGTGATCCAGTGCGTGCGCTTCTCGCGCGTCTGCTATGAGGAGTCCATGAAATACGCACATAAGCGCAAAACC TTCGGCAAGCGTCTCATCGACCACCCGGTTATTCGCATGAAACTCGCCCATATGGCTCGCCAGATCGAGGCCACC TACAACTGGCTTGAGAACATCATCTTCCAGTGTCAGTCTATGGAGGAGACCGAGGCTATGCTCAAGCTCGGCGGT GCCATTGCTGGATTGAAGGCGCAGTCAACGCAATGCTTTGAGTTCTGCGCTCGCGAGGCTAGTCAGATCTTTGGT GGTTTAAGTTACAGCCGCGGCGGTCAGGGCGGTAAGATCGAGAGACTGTACCGTGATGTGCGTGCCTATGCTATC CCCGGTGGTAGCGAGGAGATTATGCTTGATTTGAGTATGCGCCAGAGTTTGCGTGTTCACGGCATGTTTGGCATG AAGCTATAA |
| Transcript | >Pro_DTO377G3_2|g6303.t1 ATGGCAAAGACATTTAGCAAAGAGGATGTCGCCTCGCATAGCAAGGGTGACAGTCCCTGGGTCATTATCGATGAA GATGTCTACGATGTTTCCAAGTTCCAAGATGAGCACCCTGGTGGAAAGAAGATTCTCCAGCGAGTTGCGGGAAAG GACGCTTCGAAACAGTTCTGGAAATACCACAACGAGGGCATTCTGAAGAAGTACAAGGGTCAGCTGCAGATCGGT TCGTTGGATACAAAGAAGACGGCACCGGCACCCTCGGCACCCTCGGCACCCCCGGCACCAGCGCCAACCCCGAAA AAGGCTGCCCCCGAGCCGAAACCTACCATTTCTGAGTCTTCCGTGACACCACCTGCCATCGGCGCTCCCCAGGAC CCTTATGGAGAGTTGATCCCATTCGCCGACCCCTCGTGGTACCAAGGTTATGCATCCCCCTACTTCAGTGAATCC CATGCCGCACTGCGAGACGAGGTCCGCCAGTGGGTCGAGTCCGAGATCGAGCCATATGTGACCGAATGGGACGAG GCCAAGGAAGTGCCCGCTCACATCTACAAGCAGATGGGCGAGCGGGGCTACCTGGCTGGACTGCTGGGTGTCCAT TTCCCCCAGAAGCACACCCCATACCGCGTGAAGTCTGTGTCAGCAGACCGGTGGGATTTGTTCCACGAGATGCTT CTGACCGACGAGCTGTCGCGTGTCGGCAGCGGTGGTCTGGTGTGGAACCTGATCGGTGGCTACGGAATTGGCTGC CCGCCATTGGTCAAGTTCGGCAAGAAGCCCCTCGTCGACCGAATCCTGCCGGGTATCTTGGCCGGCGACAAGCGC ATTTGCCTCGCCATCACCGAGCCCGATGCGGGTAGTGACGTCGCAAACTTGGGTTGCGAGGCCAAGCTCACCGAG GACGGCAAGCACTACATTGTCAACGGCGAGAAGAAGTGGATCACCAACGGTATCTACGCTGATTATTTCACGACC GCTGTGCGCACCGGCAAGGATGGCATGAACGGCCTCAGCGTGCTGCTTATAGAGCGTGAAGCCGGTGGCGTTAGC ACCCGACGCATGGACTGCCAGGGTGTGTGGTCTAGCGGTACGACCTATGTCACATTCGAGGATGTCAAGGTTCCC GTGGAGAACCTGATCGGCAAGGAGAACCAGGGCTTCAAGGTTATCATGACAAACTTCAATCACGAGCGTATCGGC ATTGTGATCCAGTGCGTGCGCTTCTCGCGCGTCTGCTATGAGGAGTCCATGAAATACGCACATAAGCGCAAAACC TTCGGCAAGCGTCTCATCGACCACCCGGTTATTCGCATGAAACTCGCCCATATGGCTCGCCAGATCGAGGCCACC TACAACTGGCTTGAGAACATCATCTTCCAGTGTCAGTCTATGGAGGAGACCGAGGCTATGCTCAAGCTCGGCGGT GCCATTGCTGGATTGAAGGCGCAGTCAACGCAATGCTTTGAGTTCTGCGCTCGCGAGGCTAGTCAGATCTTTGGT GGTTTAAGTTACAGCCGCGGCGGTCAGGGCGGTAAGATCGAGAGACTGTACCGTGATGTGCGTGCCTATGCTATC CCCGGTGGTAGCGAGGAGATTATGCTTGATTTGAGTATGCGCCAGAGTTTGCGTGTTCACGGCATGTTTGGCATG AAGCTATAA |
| Gene | >Pro_DTO377G3_2|g6303.t1 ATGGCAAAGACATTTAGCAAAGAGGATGTCGCCTCGCATAGCAAGGGTGACAGTCCCTGGGTCATTATCGATGAA GATGTCTACGATGTTTCCAAGTTCCAAGATGAGCACCCTGGTAAGTGAACTCATGTGTGCAAATGCAGGGAATCA CATGTTAACACTTCTTGTTCTGAACAGGTGGAAAGAAGAGTACGTTGGTCCGAGAGCATCCGCTACGTCCGATGA ATTCACGTTGACAGTGTATATCTAGTTCTCCAGCGAGTTGCGGGAAAGGACGCTTCGAAACAGTTCTGGAAATAC CACAACGAGGGCATTCTGAAGAAGTACAAGGGTCAGCTGCAGATCGGTTCGTTGGATACAAAGAAGACGGCACCG GCACCCTCGGCACCCTCGGCACCCCCGGCACCAGCGCCAACCCCGAAAAAGGCTGCCCCCGAGCCGAAACCTACC ATTTCTGAGTCTTCCGTGACACCACCTGCCATCGGCGCTCCCCAGGACCCTTATGGAGAGTTGATCCCATTCGCC GACCCCTCGTGGTACCAAGGTGTAAGTCTTGCTTTCGCTCTATATCATCGATCTGTGCCTTTTACGGTTGCACCG AAGCTAATCTATATGGCGCTCATAGTATGCATCCCCCTACTTCAGTGAATCCCATGCCGCACTGCGAGACGAGGT CCGCCAGTGGGTCGAGTCCGAGATCGAGCCATATGTGACCGAATGGGACGAGGCCAAGGAAGTGCCCGCTCACAT CTACAAGCAGATGGGCGAGCGGGGCTACCTGGCTGGACTGCTGGGTGTCCATTTCCCCCAGAAGCACACCCCATA CCGCGTGAAGTCTGTGTCAGCAGACCGGTGGGATTTGTTCCACGAGATGCTTCTGACCGACGAGCTGTCGCGTGT CGGCAGCGGTGGTCTGGTGTGGAACCTGATCGGTGGCTACGGAATTGGCTGCCCGCCATTGGTCAAGTTCGGCAA GAAGCCCCTCGTCGACCGAATCCTGCCGGGTATCTTGGCCGGCGACAAGCGCATTTGCCTCGCCATCACCGAGCC CGATGCGGGTAGTGACGTCGCAAACTTGGGTTGCGAGGCCAAGCTCACCGAGGACGGCAAGCACTACATTGTCAA CGGCGAGAAGAAGTGGATCACCAACGGTATCTACGCTGATTATTTCACGACCGCTGTGCGCACCGGCAAGGATGG CATGAACGGCCTCAGCGTGCTGCTTATAGAGCGTGAAGCCGGTGGCGTTAGCACCCGACGCATGGACTGCCAGGG TGTGTGGTCTAGCGGTACGACCTATGTCACATTCGAGGATGTCAAGGTTCCCGTGGAGAACCTGATCGGCAAGGA GAACCAGGGCTTCAAGGTTATCATGACAAACTTCAATCACGAGCGTATCGGCATTGTGATCCAGTGCGTGCGCTT CTCGCGCGTCTGCTATGAGGAGTCCATGAAATACGCACATAAGCGCAAAACCTTCGGCAAGCGTCTCATCGACCA CCCGGTTATTCGCATGAAACTCGCCCATATGGCTCGCCAGATCGAGGCCACCTACAACTGGCTTGAGAACATCAT CTTCCAGTGTCAGTCTATGGAGGAGACCGAGGCTATGCTCAAGCTCGGCGGTGCCATTGCTGGATTGAAGGCGCA GTCAACGCAATGCTTTGAGTTCTGCGCTCGCGAGGCTAGTCAGATCTTTGGTGGTTTAAGTTACAGCCGCGGCGG TCAGGGCGGTAAGATCGAGAGACTGTACCGTGATGTGCGTGCCTATGCTATCCCCGGTGGTAGCGAGGAGATTAT GCTTGATTTGAGTATGCGCCAGAGTTTGCGTGTTCACGGCATGTTTGGCATGAAGCTATAA |