© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6280.t1 |
| Gene name | |
| Location | scaffold_16:406341..407815 |
| Strand | - |
| Gene length (bp) | 1474 |
| Transcript length (bp) | 1422 |
| Coding sequence length (bp) | 1422 |
| Protein length (aa) | 474 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01490 | Aa_trans | Transmembrane amino acid transporter protein | 1.1E-51 | 59 | 453 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 55 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 65 | 87 | 22 |
| 2 | 92 | 114 | 22 |
| 3 | 135 | 157 | 22 |
| 4 | 167 | 189 | 22 |
| 5 | 196 | 218 | 22 |
| 6 | 247 | 269 | 22 |
| 7 | 281 | 303 | 22 |
| 8 | 323 | 345 | 22 |
| 9 | 365 | 383 | 18 |
| 10 | 393 | 415 | 22 |
| 11 | 435 | 457 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 11.26 | 4.67 | 17.86 |
| 5d_25C | Five days - 25 degrees Celsius | 15.73 | 7.40 | 24.06 |
| 7d_25C | Seven days - 25 degrees Celsius | 15.99 | 7.27 | 24.71 |
| 10d_25C | Ten days - 25 degrees Celsius | 3.10 | 0.76 | 5.44 |
| 7d_15C | Seven days - 15 degrees Celsius | 19.66 | 8.72 | 30.60 |
| 7d_30C | Seven days - 30 degrees Celsius | 5.40 | 1.77 | 9.04 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.323054 | no |
| 3d_25C | 7d_25C | 0.289824 | no |
| 3d_25C | 7d_15C | 0.067113 | no |
| 3d_25C | 7d_30C | 0.028642 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.972434 | no |
| 5d_25C | 7d_15C | 0.534817 | no |
| 5d_25C | 7d_30C | 0.001804 | yes |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.569423 | no |
| 7d_25C | 7d_30C | 0.001804 | yes |
| 7d_25C | 10d_25C | 0.000700 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.167878 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6280.t1 MADERGYGSFHPGDNGPSPVMGCASPQPQADENTKLLSNDGDAGFEDQRVIEGHANFHRLGWKRLTVVSIVEAIA LGALSLPQAFAVLGMIPGIVICVGMGIVAIYTSYIIGAVKIKFPSVAHYGDIGQLMMGSFGYWLFSVIFVFQLTL SVGSHCLTGMIAFANITESTICALVFGGISAVILLLLAIPPTFADVAILGYVDFVSIILAIGVTMVGTGIQQAQM PGGLASSDWSYWPAEDVTFPKAAVAISNIVFAYAFAGALPSFMNEMHTPKDYVKSITALGVIEISIYVLTGSIIY AFVGQDVQSPALLSAGPVMSKIAFGIALPVIFISGSINTTVVCRFIHTRIYRDSVVQYVNTVKGWVTWLALVVAV TLIAWIVAESIPFFSELMAISAALLVSGMSFYFPPVMWLLLLKDGNWHDRKNVWHAVCNLVCFLIGIAVLGGGVY ASIFELIRKFQDGNMGKPFSCSI* |
| Coding | >Pro_DTO377G3_2|g6280.t1 ATGGCCGACGAGAGGGGTTACGGCTCTTTCCACCCCGGCGATAACGGTCCTTCGCCCGTGATGGGCTGTGCCAGC CCACAACCACAAGCCGATGAAAACACCAAGTTGTTATCAAATGACGGTGATGCTGGGTTCGAGGACCAAAGGGTG ATCGAGGGACATGCTAACTTCCATCGACTCGGGTGGAAGCGTCTCACTGTGGTCAGCATCGTCGAAGCGATCGCT CTCGGCGCACTGAGTCTCCCCCAGGCATTTGCCGTTCTAGGGATGATCCCCGGTATAGTCATATGCGTTGGCATG GGAATTGTTGCCATTTATACCAGTTACATCATCGGAGCAGTCAAGATAAAATTCCCTTCGGTTGCCCACTATGGA GACATTGGGCAGCTGATGATGGGGAGCTTTGGCTACTGGCTGTTCAGTGTAATATTCGTCTTTCAACTGACACTC TCTGTTGGATCCCACTGCCTTACGGGCATGATCGCCTTTGCAAATATTACTGAGAGTACAATTTGCGCTCTAGTA TTTGGTGGTATCTCCGCTGTCATTCTACTCTTATTGGCGATACCGCCAACATTCGCCGATGTTGCAATCCTAGGC TATGTTGACTTCGTTTCTATCATTCTGGCAATCGGAGTCACCATGGTCGGCACTGGAATCCAACAGGCTCAGATG CCCGGTGGATTAGCGAGTTCAGACTGGTCTTACTGGCCGGCCGAGGATGTCACGTTCCCTAAAGCAGCGGTTGCT ATCAGCAACATCGTCTTTGCCTACGCCTTTGCTGGTGCTTTGCCGTCATTCATGAACGAAATGCATACGCCGAAA GACTATGTCAAATCGATAACTGCACTCGGCGTCATCGAAATCTCAATCTATGTGCTCACCGGGTCTATCATCTAT GCATTTGTCGGACAGGATGTTCAATCCCCAGCTCTGCTGTCCGCGGGGCCTGTGATGTCCAAAATCGCGTTTGGA ATCGCCCTCCCCGTGATCTTCATTTCTGGCTCTATCAATACAACGGTCGTATGTCGGTTCATCCATACGCGGATT TATCGCGATTCGGTGGTTCAATACGTCAACACGGTGAAGGGATGGGTCACCTGGCTGGCGCTCGTGGTTGCCGTC ACCCTGATCGCTTGGATAGTTGCCGAAAGTATCCCCTTCTTTTCCGAGCTCATGGCTATCAGTGCGGCTCTGCTC GTCTCCGGGATGTCTTTCTATTTCCCTCCTGTGATGTGGCTTTTACTTCTGAAAGACGGGAATTGGCATGACCGG AAAAATGTCTGGCATGCTGTGTGCAATCTGGTCTGTTTCCTAATCGGAATCGCAGTCCTCGGAGGTGGAGTTTAT GCAAGTATCTTCGAATTGATCAGGAAATTCCAGGATGGGAATATGGGGAAACCTTTTTCGTGCTCGATATAA |
| Transcript | >Pro_DTO377G3_2|g6280.t1 ATGGCCGACGAGAGGGGTTACGGCTCTTTCCACCCCGGCGATAACGGTCCTTCGCCCGTGATGGGCTGTGCCAGC CCACAACCACAAGCCGATGAAAACACCAAGTTGTTATCAAATGACGGTGATGCTGGGTTCGAGGACCAAAGGGTG ATCGAGGGACATGCTAACTTCCATCGACTCGGGTGGAAGCGTCTCACTGTGGTCAGCATCGTCGAAGCGATCGCT CTCGGCGCACTGAGTCTCCCCCAGGCATTTGCCGTTCTAGGGATGATCCCCGGTATAGTCATATGCGTTGGCATG GGAATTGTTGCCATTTATACCAGTTACATCATCGGAGCAGTCAAGATAAAATTCCCTTCGGTTGCCCACTATGGA GACATTGGGCAGCTGATGATGGGGAGCTTTGGCTACTGGCTGTTCAGTGTAATATTCGTCTTTCAACTGACACTC TCTGTTGGATCCCACTGCCTTACGGGCATGATCGCCTTTGCAAATATTACTGAGAGTACAATTTGCGCTCTAGTA TTTGGTGGTATCTCCGCTGTCATTCTACTCTTATTGGCGATACCGCCAACATTCGCCGATGTTGCAATCCTAGGC TATGTTGACTTCGTTTCTATCATTCTGGCAATCGGAGTCACCATGGTCGGCACTGGAATCCAACAGGCTCAGATG CCCGGTGGATTAGCGAGTTCAGACTGGTCTTACTGGCCGGCCGAGGATGTCACGTTCCCTAAAGCAGCGGTTGCT ATCAGCAACATCGTCTTTGCCTACGCCTTTGCTGGTGCTTTGCCGTCATTCATGAACGAAATGCATACGCCGAAA GACTATGTCAAATCGATAACTGCACTCGGCGTCATCGAAATCTCAATCTATGTGCTCACCGGGTCTATCATCTAT GCATTTGTCGGACAGGATGTTCAATCCCCAGCTCTGCTGTCCGCGGGGCCTGTGATGTCCAAAATCGCGTTTGGA ATCGCCCTCCCCGTGATCTTCATTTCTGGCTCTATCAATACAACGGTCGTATGTCGGTTCATCCATACGCGGATT TATCGCGATTCGGTGGTTCAATACGTCAACACGGTGAAGGGATGGGTCACCTGGCTGGCGCTCGTGGTTGCCGTC ACCCTGATCGCTTGGATAGTTGCCGAAAGTATCCCCTTCTTTTCCGAGCTCATGGCTATCAGTGCGGCTCTGCTC GTCTCCGGGATGTCTTTCTATTTCCCTCCTGTGATGTGGCTTTTACTTCTGAAAGACGGGAATTGGCATGACCGG AAAAATGTCTGGCATGCTGTGTGCAATCTGGTCTGTTTCCTAATCGGAATCGCAGTCCTCGGAGGTGGAGTTTAT GCAAGTATCTTCGAATTGATCAGGAAATTCCAGGATGGGAATATGGGGAAACCTTTTTCGTGCTCGATATAA |
| Gene | >Pro_DTO377G3_2|g6280.t1 ATGGCCGACGAGAGGGGTTACGGCTCTTTCCACCCCGGCGATAACGGTCCTTCGCCCGTGATGGGCTGTGCCAGC CCACAACCACAAGCCGATGAAAACACCAAGTTGTTATCAAATGACGGTGATGCTGGGTTCGAGGACCAAAGGGTG ATCGAGGGACATGCTAACTTCCATCGACTCGGGTGGAAGCGTCTCACTGTGGTCAGCATCGTCGAAGCGATCGCT CTCGGCGCACTGAGTCTCCCCCAGGCATTTGCCGTTCTAGGGATGATCCCCGGTATAGTCATATGCGTTGGCATG GGAATTGTTGCCATTTATACCAGTTACATCATCGGAGCAGTCAAGATAAAATTCCCTTCGGTTGCCCACTATGGA GACATTGGGCAGCTGATGATGGGGAGCTTTGGCTACTGGCTGTTCAGTGTAATATTCGTCTTTCAACTGACACTC TCTGTTGGATCCCACTGCCTTACGGGCATGATCGCCTTTGCAAATATTACTGAGAGTACAATTTGCGCTCTAGTA TTTGGTGGTATCTCCGCTGTCATTCTACTCTTATTGGCGATACCGCCAACATTCGCCGATGTTGCAATCCTAGGC TATGTTGACTTCGTTTCTATCATTCTGGCAATCGGAGTCACCATGGTCGGCACTGGAATCCAACAGGCTCAGATG CCCGGTGGATTAGCGAGTTCAGACTGGTCTTACTGGCCGGCCGAGGATGTCACGTTCCCTAAAGCAGCGGTTGCT ATCAGCAACATCGTCTTTGCCTACGCCTTTGCTGGTGCTTTGCCGTCATTCATGAACGAAATGCATACGCCGAAA GACTATGTCAAATCGATAACTGCACTCGGCGTCATCGAAATCTCAATCTATGTGCTCACCGGGTCTATCATCTAT GCATTTGTCGGACAGGATGTTCAATCCCCAGCTCTGCTGTCCGCGGGGCCTGTGATGTCCAAAATCGCGTTTGGA ATCGCCCTCCCCGTGATCTTCATTTCTGGCTCTATCAATACAACGGTCGTATGTCGGTTCATCCATACGCGGATT TATCGCGATTCGGTGGTTCAATACGTCAACACGGTGAAGGGATGGGTCACCTGGCTGGCGCTCGTGGTTGCCGTC ACCCTGATCGCTTGGATAGTTGCCGAAAGTATCCCCTTCTTTTCCGAGCTCATGGCTATCAGTGCGGCTCTGCTC GTCTCCGGGATGTCTTTCTATTTCCCTCCTGTGATGTGGCTTTTACTTCTGAAAGACGGGAATTGGCATGACCGG AAAAATGTCTGGCATGCTGTGTGCAATCTGGTCTGTTTCCTAATCGGAATCGCAGTCCTCGGAGGTGGAGTTTAT GCAAGTATCTTCGAATTGGTGAGTTCCGTGAAATCCGTCTCCATTCCATCTTGCTAATTTAGGTAAACAGATCAG GAAATTCCAGGATGGGAATATGGGGAAACCTTTTTCGTGCTCGATATAA |