© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6273.t1 |
| Gene name | |
| Location | scaffold_16:388181..390354 |
| Strand | + |
| Gene length (bp) | 2173 |
| Transcript length (bp) | 1779 |
| Coding sequence length (bp) | 1779 |
| Protein length (aa) | 593 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08153 | NGP1NT | NGP1NT (NUC091) domain | 5.2E-50 | 43 | 177 |
| PF01926 | MMR_HSR1 | 50S ribosome-binding GTPase | 2.0E-13 | 357 | 423 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005525 | GTP binding | Yes |
| GO:0019001 | guanyl nucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0003674 | molecular_function | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0032561 | guanyl ribonucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0017076 | purine nucleotide binding | No |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 42.87 | 25.56 | 60.17 |
| 5d_25C | Five days - 25 degrees Celsius | 29.09 | 16.66 | 41.51 |
| 7d_25C | Seven days - 25 degrees Celsius | 33.02 | 19.23 | 46.82 |
| 10d_25C | Ten days - 25 degrees Celsius | 25.88 | 14.50 | 37.27 |
| 7d_15C | Seven days - 15 degrees Celsius | 38.49 | 22.69 | 54.28 |
| 7d_30C | Seven days - 30 degrees Celsius | 28.07 | 15.98 | 40.16 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.090767 | no |
| 3d_25C | 7d_25C | 0.292783 | no |
| 3d_25C | 7d_15C | 0.715872 | no |
| 3d_25C | 7d_30C | 0.053498 | no |
| 3d_25C | 10d_25C | 0.021670 | yes |
| 5d_25C | 7d_25C | 0.680981 | no |
| 5d_25C | 7d_15C | 0.263090 | no |
| 5d_25C | 7d_30C | 0.922044 | no |
| 5d_25C | 10d_25C | 0.718355 | no |
| 7d_25C | 7d_15C | 0.585429 | no |
| 7d_25C | 7d_30C | 0.567106 | no |
| 7d_25C | 10d_25C | 0.348994 | no |
| 7d_15C | 7d_30C | 0.183143 | no |
| 7d_15C | 10d_25C | 0.089882 | no |
| 7d_30C | 10d_25C | 0.809077 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 6231 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6273.t1 MGTGKKEAARKVRQGKPDDGMANVKTKGENFYRDAKKVKTLNMFKSGTPRRNAQGDITVAATYQSKELPTARIEP NRKWFANSRVISQEALTSFRDAVAERAADPYQVLLKTNKLPMSLIRDNDKVNGLKQHQAKMTIETSPFNDTFGPK AQRKRVKLGVSSLEDLAGETAKMQDTYIEKNDEGTHADGSAIVRGDDTAAVEDLGLLTTSRESVFSKGQSKRIWN ELYKVIDSSDVIIHVLDSRDPDGTRCRSVEKYVREEAPHKHLIFVLNKCDLVPTGVASRLLPATSVVHDFGCACF NGIPSVTALAAWVRHLSKDYPCLAFHANINNSFGKGSLISLLRQFSSLHSDRKQVSVGLIGYPNTGKSSIINTLR NKKVCTVAPIPGETKVWQYITLMKRIYLIDCPGVVPPNVNDTEEDILLRGVCRVENVHNPEQYIPAVLRRVLPRH LERTYGIKYQENYLDWLALLARQGGRLLKGGEADLDGVAKMVINDFLRGKIPWYTPPPKGTGKGEKDEKDEETVE GIEGREGRLGEMPRKRKLDENNEPAAKATEADSESEPAQDEAVDAEDSDNDSIANLEVSDVESGEEE* |
| Coding | >Pro_DTO377G3_2|g6273.t1 ATGGGTACAGGAAAGAAGGAGGCCGCTCGTAAAGTGCGGCAGGGAAAGCCCGATGATGGCATGGCCAATGTCAAG ACCAAAGGTGAAAATTTTTACCGTGATGCCAAGAAGGTCAAGACCTTGAACATGTTCAAGTCTGGCACGCCGCGC CGCAACGCGCAGGGTGATATCACAGTTGCCGCGACTTATCAATCTAAAGAGTTGCCAACAGCCCGCATCGAGCCA AACCGTAAATGGTTTGCTAACTCCCGTGTCATCTCACAAGAGGCTTTGACCTCGTTCCGTGATGCTGTTGCGGAG CGTGCGGCCGACCCGTACCAAGTTCTTCTCAAGACCAACAAGCTCCCCATGAGCTTGATTCGGGACAATGATAAA GTCAACGGCTTGAAGCAACATCAGGCTAAGATGACCATCGAGACTTCTCCTTTCAATGATACATTCGGCCCCAAG GCCCAGCGCAAGCGCGTTAAGCTTGGTGTATCGTCTCTCGAAGACCTCGCTGGCGAGACAGCCAAGATGCAGGAC ACCTACATTGAGAAGAACGACGAGGGAACTCATGCCGATGGAAGCGCAATTGTTCGCGGCGACGACACTGCCGCG GTCGAAGACCTGGGTCTACTGACTACCTCTCGTGAATCTGTCTTTTCCAAGGGACAGAGTAAGCGTATTTGGAAC GAACTTTACAAGGTCATCGATTCTTCTGATGTCATCATCCATGTCCTGGATTCCCGTGATCCCGACGGTACTCGT TGCAGAAGTGTTGAGAAATATGTTCGTGAGGAGGCACCCCACAAGCACTTGATCTTCGTTTTGAACAAGTGCGAT CTCGTCCCCACCGGCGTTGCTTCAAGGCTTCTTCCTGCGACTTCGGTCGTGCACGACTTCGGTTGTGCTTGTTTC AATGGAATTCCGTCTGTTACAGCTTTGGCCGCTTGGGTTCGTCATCTTTCCAAGGACTACCCCTGTCTCGCTTTC CATGCCAATATCAACAACTCTTTCGGCAAGGGCTCTTTGATCTCACTGCTTCGCCAGTTCTCATCCCTTCATTCC GACCGCAAGCAGGTGTCTGTTGGCTTGATCGGCTACCCTAACACGGGCAAGTCTTCCATCATCAACACACTCCGA AACAAGAAGGTGTGCACAGTCGCCCCCATTCCGGGTGAAACCAAGGTCTGGCAGTATATTACCTTGATGAAGAGA ATATATCTCATTGATTGCCCCGGTGTGGTCCCACCCAACGTCAACGATACCGAGGAGGACATCCTTCTCCGTGGA GTCTGCAGAGTGGAGAACGTTCACAACCCAGAGCAATACATTCCGGCCGTGCTTCGCCGTGTCCTGCCCCGTCAC CTTGAGCGCACCTACGGTATCAAGTACCAGGAGAACTACCTCGATTGGCTCGCGCTTCTTGCTCGCCAGGGCGGT CGTCTCCTCAAGGGAGGTGAGGCCGATCTGGATGGTGTTGCTAAGATGGTGATCAACGATTTCCTTCGTGGAAAG ATTCCCTGGTACACGCCCCCACCCAAGGGTACCGGGAAGGGCGAGAAGGACGAGAAGGACGAGGAGACTGTCGAG GGTATCGAGGGCCGTGAGGGTCGACTCGGCGAGATGCCCCGCAAGCGCAAGTTGGATGAGAACAACGAGCCTGCC GCCAAGGCTACGGAGGCCGATTCCGAGTCTGAGCCTGCTCAGGATGAAGCCGTTGATGCTGAGGACAGCGATAAT GATTCGATCGCCAACTTGGAGGTCAGCGATGTGGAGAGTGGCGAGGAGGAGTGA |
| Transcript | >Pro_DTO377G3_2|g6273.t1 ATGGGTACAGGAAAGAAGGAGGCCGCTCGTAAAGTGCGGCAGGGAAAGCCCGATGATGGCATGGCCAATGTCAAG ACCAAAGGTGAAAATTTTTACCGTGATGCCAAGAAGGTCAAGACCTTGAACATGTTCAAGTCTGGCACGCCGCGC CGCAACGCGCAGGGTGATATCACAGTTGCCGCGACTTATCAATCTAAAGAGTTGCCAACAGCCCGCATCGAGCCA AACCGTAAATGGTTTGCTAACTCCCGTGTCATCTCACAAGAGGCTTTGACCTCGTTCCGTGATGCTGTTGCGGAG CGTGCGGCCGACCCGTACCAAGTTCTTCTCAAGACCAACAAGCTCCCCATGAGCTTGATTCGGGACAATGATAAA GTCAACGGCTTGAAGCAACATCAGGCTAAGATGACCATCGAGACTTCTCCTTTCAATGATACATTCGGCCCCAAG GCCCAGCGCAAGCGCGTTAAGCTTGGTGTATCGTCTCTCGAAGACCTCGCTGGCGAGACAGCCAAGATGCAGGAC ACCTACATTGAGAAGAACGACGAGGGAACTCATGCCGATGGAAGCGCAATTGTTCGCGGCGACGACACTGCCGCG GTCGAAGACCTGGGTCTACTGACTACCTCTCGTGAATCTGTCTTTTCCAAGGGACAGAGTAAGCGTATTTGGAAC GAACTTTACAAGGTCATCGATTCTTCTGATGTCATCATCCATGTCCTGGATTCCCGTGATCCCGACGGTACTCGT TGCAGAAGTGTTGAGAAATATGTTCGTGAGGAGGCACCCCACAAGCACTTGATCTTCGTTTTGAACAAGTGCGAT CTCGTCCCCACCGGCGTTGCTTCAAGGCTTCTTCCTGCGACTTCGGTCGTGCACGACTTCGGTTGTGCTTGTTTC AATGGAATTCCGTCTGTTACAGCTTTGGCCGCTTGGGTTCGTCATCTTTCCAAGGACTACCCCTGTCTCGCTTTC CATGCCAATATCAACAACTCTTTCGGCAAGGGCTCTTTGATCTCACTGCTTCGCCAGTTCTCATCCCTTCATTCC GACCGCAAGCAGGTGTCTGTTGGCTTGATCGGCTACCCTAACACGGGCAAGTCTTCCATCATCAACACACTCCGA AACAAGAAGGTGTGCACAGTCGCCCCCATTCCGGGTGAAACCAAGGTCTGGCAGTATATTACCTTGATGAAGAGA ATATATCTCATTGATTGCCCCGGTGTGGTCCCACCCAACGTCAACGATACCGAGGAGGACATCCTTCTCCGTGGA GTCTGCAGAGTGGAGAACGTTCACAACCCAGAGCAATACATTCCGGCCGTGCTTCGCCGTGTCCTGCCCCGTCAC CTTGAGCGCACCTACGGTATCAAGTACCAGGAGAACTACCTCGATTGGCTCGCGCTTCTTGCTCGCCAGGGCGGT CGTCTCCTCAAGGGAGGTGAGGCCGATCTGGATGGTGTTGCTAAGATGGTGATCAACGATTTCCTTCGTGGAAAG ATTCCCTGGTACACGCCCCCACCCAAGGGTACCGGGAAGGGCGAGAAGGACGAGAAGGACGAGGAGACTGTCGAG GGTATCGAGGGCCGTGAGGGTCGACTCGGCGAGATGCCCCGCAAGCGCAAGTTGGATGAGAACAACGAGCCTGCC GCCAAGGCTACGGAGGCCGATTCCGAGTCTGAGCCTGCTCAGGATGAAGCCGTTGATGCTGAGGACAGCGATAAT GATTCGATCGCCAACTTGGAGGTCAGCGATGTGGAGAGTGGCGAGGAGGAGTGA |
| Gene | >Pro_DTO377G3_2|g6273.t1 ATGGGTACAGGAAAGAAGGAGGCCGCTCGTAAAGTGCGGCAGGGAAAGCCCGATGATGGCATGGCCAATGTCAAG ACCAAAGGTGAAAATTTTTACCGGTATGTACAGCCTAAGCAAAAATCCTCATTATTTTGTAACAAATACTGACTT AACACCCAGTGATGCCAAGAAGGTCAAGACCTTGAACATGTTCAAGTCTGGCACGCCGCGCCGCAACGCGCAGGG TGATATCACAGTTGCCGCGACTTATCAATCTAAAGAGTTGCCAACAGCCCGCATCGAGCCAAACCGTAAATGGTT TGCTAACTCCCGTGTCATCTCACAAGAGGCTTTGACCTCGTTCCGTGATGCTGTTGCGGAGCGTGCGGCCGACCC GTACCAAGTTCTTCTCAAGACCAACAAGCTCCCCATGAGCTTGATTCGGGACAATGATAAAGTCAACGGCTTGAA GCAACATCAGGCTAAGATGACCATCGAGACTTCTCCTTTCAATGATACATTCGGCCCCAAGGCCCAGCGCAAGCG CGTTAAGCTTGGTGTATCGTCTCTCGAAGACCTCGCTGGCGAGACAGCCAAGATGCAGGACACCTACATTGAGAA GAACGACGAGGGAACTCATGCCGATGGAAGCGCAATTGTTCGCGGCGACGACACTGCCGCGGTCGAAGACCTGGG TCTACTGACTACCTCTCGTGAATCTGTCTTTTCCAAGGGACAGAGTAAGCGTATTTGGAACGAACTTTACAAGGT CATCGATTCTTCTGATGTCATCATCCATGTCCTGGATTCCCGTGATCCCGACGGTACTCGTTGCAGAAGTGTTGA GAAATATGTTCGTGAGGAGGCACCCCACAAGCACTTGATCTTCGTTTTGAACAAGTGCGATCTCGTCCCCACCGG CGTTGCTGTAAGTCTCACTATTTCCCATTTGATATCCCTTTTGAGCACTCGGTTTTTGTTTTCTTTTCTGTCCTG CGTTTTCCTGTTATCCCCCTGTTCCATCGCTAAGTCAAGGCTTCTTCCTGCGACTTCGGTCGTGCACGACTTCGG TTGTGCTTGTTTCAATGGAATTCCGTCTGTTACAGCTTTGGTATATTAACACTGGCCCGCACCGAATTTCGTTAT GAACCTAGGTTGACTTGCTTTCGTCTTGAAGGCCTGTCGCAAAGGGCCAGCTGTGTTTTGTTTTTGAGTAGAGGT CTGCTTCTGCCTATTTGGTGGCGTTGTAGCAGACTTCTTAGTAACATCCCACACATTCTATCTTTACACAATGTT TCATTCATTGCTAGTGACTGATTGCTAACTTTGCATCTTTGACTAGGCCGCTTGGGTTCGTCATCTTTCCAAGGA CTACCCCTGTCTCGCTTTCCATGCCAATATCAACAACTCTTTCGGCAAGGGCTCTTTGATCTCACTGCTTCGCCA GTTCTCATCCCTTCATTCCGACCGCAAGCAGGTGTCTGTTGGCTTGATCGGCTACCCTAACACGGGCAAGTCTTC CATCATCAACACACTCCGAAACAAGAAGGTGTGCACAGTCGCCCCCATTCCGGGTGAAACCAAGGTCTGGCAGTA TATTACCTTGATGAAGAGAATATATCTCATTGATTGCCCCGGTGTGGTCCCACCCAACGTCAACGATACCGAGGA GGACATCCTTCTCCGTGGAGTCTGCAGAGTGGAGAACGTTCACAACCCAGAGCAATACATTCCGGCCGTGCTTCG CCGTGTCCTGCCCCGTCACCTTGAGCGCACCTACGGTATCAAGTACCAGGAGAACTACCTCGATTGGCTCGCGCT TCTTGCTCGCCAGGGCGGTCGTCTCCTCAAGGGAGGTGAGGCCGATCTGGATGGTGTTGCTAAGATGGTGATCAA CGATTTCCTTCGTGGAAAGATTCCCTGGTACACGCCCCCACCCAAGGGTACCGGGAAGGGCGAGAAGGACGAGAA GGACGAGGAGACTGTCGAGGGTATCGAGGGCCGTGAGGGTCGACTCGGCGAGATGCCCCGCAAGCGCAAGTTGGA TGAGAACAACGAGCCTGCCGCCAAGGCTACGGAGGCCGATTCCGAGTCTGAGCCTGCTCAGGATGAAGCCGTTGA TGCTGAGGACAGCGATAATGATTCGATCGCCAACTTGGAGGTCAGCGATGTGGAGAGTGGCGAGGAGGAGTGA |