Protein ID | Pro_DTO377G3_2|g6262.t1 |
Gene name | |
Location | scaffold_16:360735..363172 |
Strand | + |
Gene length (bp) | 2437 |
Transcript length (bp) | 2325 |
Coding sequence length (bp) | 2325 |
Protein length (aa) | 775 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04253 | TFR_dimer | Transferrin receptor-like dimerisation domain | 1.2E-32 | 648 | 773 |
PF04389 | Peptidase_M28 | Peptidase family M28 | 6.7E-20 | 396 | 584 |
PF02225 | PA | PA domain | 8.5E-08 | 203 | 280 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 63 | 0.5 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 35 | 57 | 22 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
3d_25C | Three days - 25 degrees Celsius | 72.94 | 44.46 | 101.42 |
5d_25C | Five days - 25 degrees Celsius | 68.49 | 42.15 | 94.83 |
7d_25C | Seven days - 25 degrees Celsius | 68.85 | 42.23 | 95.48 |
10d_25C | Ten days - 25 degrees Celsius | 64.43 | 39.63 | 89.22 |
7d_15C | Seven days - 15 degrees Celsius | 106.85 | 64.66 | 149.04 |
7d_30C | Seven days - 30 degrees Celsius | 67.01 | 41.24 | 92.78 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
3d_25C | 5d_25C | 0.837203 | no |
3d_25C | 7d_25C | 0.852289 | no |
3d_25C | 7d_15C | 0.076707 | no |
3d_25C | 7d_30C | 0.768987 | no |
3d_25C | 10d_25C | 0.647379 | no |
5d_25C | 7d_25C | 0.988435 | no |
5d_25C | 7d_15C | 0.029538 | yes |
5d_25C | 7d_30C | 0.948860 | no |
5d_25C | 10d_25C | 0.841189 | no |
7d_25C | 7d_15C | 0.029770 | yes |
7d_25C | 7d_30C | 0.935126 | no |
7d_25C | 10d_25C | 0.823467 | no |
7d_15C | 7d_30C | 0.022940 | yes |
7d_15C | 10d_25C | 0.012609 | yes |
7d_30C | 10d_25C | 0.903475 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g6262.t1 MREKDMPYSETTPLLEVNVAPPRHRYPHNAVRQACTISLAALLSVATLLFLIPTAILPREHGSIWSYFPGAHPIP HEAWPESFGLPYDQLQQILLNVPSADKAREWSQYYTAGPHLAGKNLSQALWTLEKWKEFGVEDTELVAYDIYINY PVDHRLALLKKSGDKTEVTFEATLEEDVLEEDPTSGLPDRVPVFHGYSATGNVTAQYVYVNFGTYRDFEDLVNAN VTLEGKIAIAKYGMIFRGLKVKRAQELGMVGVVIYSDPQEDGEITEENGYEAYPNGPARNPSAIQRGSTQFLSIL PGDPTTPGYASKPGCERQDPHNSIPSIPSLPISYKEILPFLKALNGHGPKASDFNEFWQGGGLGYKGVEYNIGPS PEDVLINLDNLQEYVTTPLWNVIGTIKGHIPDEVVILGNHRDAWIAGGAGDPNSGSAALNEVVRSFGEALKAGWK PLRTIVFASWDGEEYGLLGSTEWVEEYLPWLSEANIAYLNVDVAAAGTNFEPRASPLLNKVINDVTALVQSPNQT VRGQTVRDVWNGKISTMGSGSDFTAFQDFAGIASLDFGFGRGKNDPVYHYHSNYDSFAWMEKYGDKDFLYHQACT KLWALAAAQLVESPLLALNATDYSLGLGSYLDHIKPAADNLPENTQFEFAPLDRAILEFQESAKAFDAFATDLKS QLGDNVPWYHWWKKVRLWFQIRATNAKYKGIERAFLYQPGLDGREWFKHVVFAPGIWTGYSGATYPGLVESLEAG DVENAEKWSSIIQDRIGAATQLLL* |
Coding | >Pro_DTO377G3_2|g6262.t1 ATGAGGGAAAAAGACATGCCTTATTCGGAGACCACACCTCTGCTGGAGGTCAATGTCGCTCCTCCGCGGCATAGA TATCCCCACAATGCTGTTCGTCAAGCGTGTACTATCTCCCTTGCAGCCCTACTTTCTGTGGCGACTCTTCTGTTC CTAATTCCTACTGCCATTCTGCCTCGAGAGCACGGCTCCATCTGGTCCTATTTCCCTGGTGCTCATCCAATTCCA CATGAAGCGTGGCCAGAGAGCTTCGGTCTGCCTTACGACCAGCTCCAGCAGATCCTCCTCAATGTGCCTTCCGCA GATAAGGCCCGAGAGTGGAGCCAATACTATACCGCGGGGCCGCACTTGGCAGGGAAGAATTTGTCTCAGGCGCTC TGGACTTTGGAAAAATGGAAGGAATTTGGGGTGGAGGATACCGAGCTCGTGGCGTATGACATTTACATCAACTAT CCGGTCGATCATCGCCTGGCCCTCTTGAAGAAATCCGGTGACAAGACCGAAGTGACCTTCGAAGCAACATTGGAG GAGGATGTCCTCGAAGAGGATCCTACTTCCGGCCTGCCAGACCGTGTCCCAGTGTTCCATGGCTATTCTGCTACC GGCAATGTGACCGCACAGTATGTGTACGTCAACTTTGGCACGTACAGGGATTTTGAGGACCTCGTCAATGCAAAC GTCACCTTGGAGGGTAAGATTGCCATCGCTAAATACGGTATGATATTCCGTGGTTTGAAGGTAAAGCGTGCACAA GAGCTTGGAATGGTCGGCGTAGTCATCTACAGTGATCCGCAGGAAGACGGTGAAATTACCGAGGAAAACGGCTAT GAAGCCTATCCTAATGGACCGGCACGGAATCCCAGTGCTATCCAGAGAGGTAGCACTCAATTCCTCAGTATCCTT CCCGGTGACCCCACAACCCCGGGATACGCATCTAAGCCTGGATGCGAACGACAAGATCCCCACAACTCAATCCCT TCAATCCCATCTCTTCCCATCTCGTACAAGGAAATTTTGCCATTCTTGAAGGCGCTCAACGGTCACGGCCCCAAA GCGTCGGACTTCAACGAGTTTTGGCAGGGAGGCGGCCTCGGCTACAAGGGCGTAGAGTACAATATCGGGCCATCT CCCGAGGATGTGCTGATTAACCTCGACAACCTCCAGGAGTATGTGACAACCCCGCTGTGGAATGTTATCGGTACC ATCAAGGGCCACATCCCCGATGAGGTTGTTATCCTCGGTAATCACCGTGACGCGTGGATTGCTGGTGGCGCAGGA GATCCTAACAGTGGATCCGCCGCGTTGAACGAAGTCGTTCGCAGCTTCGGCGAGGCTCTCAAGGCAGGATGGAAG CCACTGCGCACTATTGTCTTTGCCAGCTGGGACGGTGAAGAGTATGGCCTTCTCGGCTCGACCGAGTGGGTGGAA GAATACCTCCCATGGCTCTCCGAGGCTAATATCGCATACCTGAATGTCGATGTGGCTGCTGCGGGCACTAATTTC GAACCTCGTGCCAGTCCCTTGCTAAACAAGGTCATCAACGACGTCACCGCTCTGGTGCAGTCACCCAACCAGACC GTGCGGGGCCAGACTGTCCGCGATGTCTGGAATGGCAAGATCTCGACGATGGGCAGCGGCAGTGACTTCACTGCC TTCCAAGATTTCGCCGGCATCGCCAGTCTCGACTTTGGCTTTGGTCGTGGTAAAAATGACCCGGTCTACCACTAC CACTCAAACTACGACAGCTTCGCATGGATGGAGAAGTACGGAGACAAGGACTTCCTCTACCACCAAGCTTGCACA AAACTCTGGGCTCTGGCAGCGGCACAATTGGTGGAGTCTCCCCTTCTTGCGCTCAACGCCACCGACTATTCTCTT GGCCTTGGATCTTACCTGGACCACATCAAACCTGCGGCGGACAATCTCCCGGAGAATACTCAATTCGAATTCGCA CCTCTAGATAGGGCGATTCTTGAGTTCCAGGAATCTGCAAAGGCTTTCGATGCCTTTGCTACCGACCTGAAGTCC CAGCTTGGTGATAACGTGCCTTGGTACCACTGGTGGAAGAAGGTGAGACTGTGGTTCCAGATTCGCGCTACCAAC GCGAAGTACAAGGGCATTGAACGGGCTTTCTTATATCAGCCTGGTCTAGATGGCCGTGAATGGTTCAAGCACGTC GTCTTTGCCCCTGGAATTTGGACTGGTTATTCGGGAGCCACGTACCCTGGACTTGTAGAGAGTCTCGAAGCTGGA GACGTGGAGAACGCCGAGAAATGGAGCTCCATCATCCAGGATCGAATTGGTGCTGCGACCCAGTTGTTGCTGTAA |
Transcript | >Pro_DTO377G3_2|g6262.t1 ATGAGGGAAAAAGACATGCCTTATTCGGAGACCACACCTCTGCTGGAGGTCAATGTCGCTCCTCCGCGGCATAGA TATCCCCACAATGCTGTTCGTCAAGCGTGTACTATCTCCCTTGCAGCCCTACTTTCTGTGGCGACTCTTCTGTTC CTAATTCCTACTGCCATTCTGCCTCGAGAGCACGGCTCCATCTGGTCCTATTTCCCTGGTGCTCATCCAATTCCA CATGAAGCGTGGCCAGAGAGCTTCGGTCTGCCTTACGACCAGCTCCAGCAGATCCTCCTCAATGTGCCTTCCGCA GATAAGGCCCGAGAGTGGAGCCAATACTATACCGCGGGGCCGCACTTGGCAGGGAAGAATTTGTCTCAGGCGCTC TGGACTTTGGAAAAATGGAAGGAATTTGGGGTGGAGGATACCGAGCTCGTGGCGTATGACATTTACATCAACTAT CCGGTCGATCATCGCCTGGCCCTCTTGAAGAAATCCGGTGACAAGACCGAAGTGACCTTCGAAGCAACATTGGAG GAGGATGTCCTCGAAGAGGATCCTACTTCCGGCCTGCCAGACCGTGTCCCAGTGTTCCATGGCTATTCTGCTACC GGCAATGTGACCGCACAGTATGTGTACGTCAACTTTGGCACGTACAGGGATTTTGAGGACCTCGTCAATGCAAAC GTCACCTTGGAGGGTAAGATTGCCATCGCTAAATACGGTATGATATTCCGTGGTTTGAAGGTAAAGCGTGCACAA GAGCTTGGAATGGTCGGCGTAGTCATCTACAGTGATCCGCAGGAAGACGGTGAAATTACCGAGGAAAACGGCTAT GAAGCCTATCCTAATGGACCGGCACGGAATCCCAGTGCTATCCAGAGAGGTAGCACTCAATTCCTCAGTATCCTT CCCGGTGACCCCACAACCCCGGGATACGCATCTAAGCCTGGATGCGAACGACAAGATCCCCACAACTCAATCCCT TCAATCCCATCTCTTCCCATCTCGTACAAGGAAATTTTGCCATTCTTGAAGGCGCTCAACGGTCACGGCCCCAAA GCGTCGGACTTCAACGAGTTTTGGCAGGGAGGCGGCCTCGGCTACAAGGGCGTAGAGTACAATATCGGGCCATCT CCCGAGGATGTGCTGATTAACCTCGACAACCTCCAGGAGTATGTGACAACCCCGCTGTGGAATGTTATCGGTACC ATCAAGGGCCACATCCCCGATGAGGTTGTTATCCTCGGTAATCACCGTGACGCGTGGATTGCTGGTGGCGCAGGA GATCCTAACAGTGGATCCGCCGCGTTGAACGAAGTCGTTCGCAGCTTCGGCGAGGCTCTCAAGGCAGGATGGAAG CCACTGCGCACTATTGTCTTTGCCAGCTGGGACGGTGAAGAGTATGGCCTTCTCGGCTCGACCGAGTGGGTGGAA GAATACCTCCCATGGCTCTCCGAGGCTAATATCGCATACCTGAATGTCGATGTGGCTGCTGCGGGCACTAATTTC GAACCTCGTGCCAGTCCCTTGCTAAACAAGGTCATCAACGACGTCACCGCTCTGGTGCAGTCACCCAACCAGACC GTGCGGGGCCAGACTGTCCGCGATGTCTGGAATGGCAAGATCTCGACGATGGGCAGCGGCAGTGACTTCACTGCC TTCCAAGATTTCGCCGGCATCGCCAGTCTCGACTTTGGCTTTGGTCGTGGTAAAAATGACCCGGTCTACCACTAC CACTCAAACTACGACAGCTTCGCATGGATGGAGAAGTACGGAGACAAGGACTTCCTCTACCACCAAGCTTGCACA AAACTCTGGGCTCTGGCAGCGGCACAATTGGTGGAGTCTCCCCTTCTTGCGCTCAACGCCACCGACTATTCTCTT GGCCTTGGATCTTACCTGGACCACATCAAACCTGCGGCGGACAATCTCCCGGAGAATACTCAATTCGAATTCGCA CCTCTAGATAGGGCGATTCTTGAGTTCCAGGAATCTGCAAAGGCTTTCGATGCCTTTGCTACCGACCTGAAGTCC CAGCTTGGTGATAACGTGCCTTGGTACCACTGGTGGAAGAAGGTGAGACTGTGGTTCCAGATTCGCGCTACCAAC GCGAAGTACAAGGGCATTGAACGGGCTTTCTTATATCAGCCTGGTCTAGATGGCCGTGAATGGTTCAAGCACGTC GTCTTTGCCCCTGGAATTTGGACTGGTTATTCGGGAGCCACGTACCCTGGACTTGTAGAGAGTCTCGAAGCTGGA GACGTGGAGAACGCCGAGAAATGGAGCTCCATCATCCAGGATCGAATTGGTGCTGCGACCCAGTTGTTGCTGTAA |
Gene | >Pro_DTO377G3_2|g6262.t1 ATGAGGGAAAAAGACATGCCTTATTCGGAGACCACACCTCTGCTGGAGGTCAATGTCGCTCCTCCGCGGCATAGA TATCCCCACAATGCTGTTCGTCAAGCGTGTACTATCTCCCTTGCAGCCCTACTTTCTGTGGCGACTCTTCTGTTC CTAATTCCTACTGCCATTCTGCCTCGAGAGCACGGCTCCATCTGGTCCTATTTCCCTGGTGCTCATCCAATTCCA CATGAAGCGTGGCCAGAGAGCTTCGGTCTGCCTTACGACCAGCTCCAGCAGATCCTCCTCAATGTGCCTTCCGCA GATAAGGCCCGAGAGTGGAGCCAATACTATACCGCGGGGCCGCACTTGGCAGGGAAGAATTTGTCTCAGGCGCTC TGGACTTTGGAAAAATGGAAGGAATTTGGGGTGGAGGATACCGAGCTCGTGGCGTATGACATTTACATCAACTAT CCGGTCGATCATCGCCTGGCCCTCTTGAAGAAATCCGGTGACAAGACCGAAGTGACCTTCGAAGCAACATTGGAG GAGGATGTCCTCGAAGAGGATCCTACTTCCGGCCTGCCAGACCGTGTCCCAGTGTTCCATGGCTATTCTGCTACC GGCAATGTGACCGCACAGTATGTGTACGTCAACTTTGGCACGTACAGGGATTTTGAGGACCTCGTCAATGCAAAC GTCACCTTGGAGGGTAAGATTGCCATCGCTAAATACGGTATGATATTCCGTGGTTTGAAGGTAAAGCGTGCACAA GAGCTTGGAATGGTCGGCGTAGTCATCTACAGTGATCCGCAGGAAGACGGTGAAATTACCGAGGAAAACGGCTAT GAAGCCTATCCTAATGGACCGGCACGGAATCCCAGTGCTATCCAGAGAGGTAGCACTCAATTCCTCAGTAAGGAT TCTTTTCCAAGGTGCTGATATTGCAAAGCTAACTTGAACAAGGTATCCTTCCCGGTGACCCCACAACCCCGGGAT ACGCATCTAAGCCTGGATGCGAACGACAAGATCCCCACAACTCAATCCCTTCAATCCCATCTCTTCCCATCTCGT ACAAGGAAATTTTGCCATTCTTGAAGGCGCTCAACGGTCACGGCCCCAAAGCGTCGGACTTCAACGAGTTTTGGC AGGGAGGCGGCCTCGGCTACAAGGGCGTAGAGTACAATATCGGGCCATCTCCCGAGGATGTGCTGATTAACCTCG ACAACCTCCAGGAGTATGTGACAACCCCGCTGTGGAATGTTATCGGTACCATCAAGGGCCACATCCCCGATGAGG TTGTTATCCTCGGTAATCACCGTGACGCGTGGATTGCTGGTGGCGCAGGAGATCCTAACAGTGGATCCGCCGCGT TGAACGAAGTCGTTCGCAGCTTCGGCGAGGCTCTCAAGGCAGGATGGAAGCCACTGCGCACTATTGTCTTTGCCA GCTGGGACGGTGAAGAGTATGGCCTTCTCGGCTCGACCGAGTGGGTGGAAGAATACCTCCCATGGCTCTCCGAGG CTAATATCGCATACCTGAATGTCGATGTGGCTGCTGCGGGCACTAATTTCGAACCTCGTGCCAGTCCCTTGCTAA ACAAGGTCATCAACGACGTCACCGCTCTGGTGCAGTCACCCAACCAGACCGTGCGGGGCCAGACTGTCCGCGATG TCTGGAATGGCAAGATCTCGACGATGGGCAGCGGCAGTGACTTCACTGCCTTCCAAGATTTCGCCGGCATCGCCA GTCTCGACTTTGGCTTTGGTCGTGGTAAAAATGACCCGGTCTACCACTACCACTCAAACTACGACAGCTTCGCAT GGATGGAGAAGTACGGAGACAAGGACTTCCTCTACCACCAAGCTTGCACAAAACTCTGGGCTCTGGCAGCGGCAC AATTGGTGGAGTCTCCCCTTCTTGCGCTCAACGCCACCGACTATTCTCTTGGCCTTGGATCTTACCTGGACCACA TCAAACCTGCGGCGGACAATCTCCCGGAGAATACTCAATTCGAATTCGCACCTCTAGATAGGGCGATTCTTGAGT TCCAGGAATCTGCAAAGGCTTTCGATGCCTTTGCTACCGACCTGAAGTCCCAGCTTGGTGATAACGTGCCTTGGT ACCACTGGTGGAAGAAGGTGAGACTGTGGTTCCAGATTCGCGCTACCAACGCGAAGTACAAGGGCATTGAACGGG CTTTCTTATATCAGCCTGGTCTAGATGGCCGTGAATGGTTCAAGCACGTCGTCTTTGCCCCTGGAATTTGGACTG GTTATTCGGGAGCCACGTACCCTGGACTTGTAGAGAGTCTCGAAGCTGGAGACGTGGAGAACGCCGAGGTATGTG TTTATTTGCGACCCTTTTTTGCCTTGGGTACAATTACTAACTGATGGGTTTTTAGAAATGGAGCTCCATCATCCA GGATCGAATTGGTGCTGCGACCCAGTTGTTGCTGTAA |