Penicillium roqueforti LCP96 04111

General Properties

Protein ID	Pro_DTO377G3_2\|g6251.t1
Gene name
Location	scaffold_16:330682..333591
Strand	+
Gene length (bp)	2909
Transcript length (bp)	2790
Coding sequence length (bp)	2790
Protein length (aa)	930

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04408	HA2	Helicase associated domain (HA2)	1.7E-18	584	669
PF07717	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	3.7E-15	728	805
PF00271	Helicase_C	Helicase conserved C-terminal domain	3.4E-15	391	519
PF00270	DEAD	DEAD/DEAH box helicase	2.0E-06	198	348

GO

GO Term	Description	Terminal node
GO:0005524	ATP binding	Yes
GO:0003676	nucleic acid binding	Yes
GO:0004386	helicase activity	Yes
GO:0003824	catalytic activity	No
GO:1901265	nucleoside phosphate binding	No
GO:0035639	purine ribonucleoside triphosphate binding	No
GO:0032559	adenyl ribonucleotide binding	No
GO:0043167	ion binding	No
GO:0017076	purine nucleotide binding	No
GO:0097367	carbohydrate derivative binding	No
GO:0140657	ATP-dependent activity	No
GO:0030554	adenyl nucleotide binding	No
GO:0000166	nucleotide binding	No
GO:0005488	binding	No
GO:0036094	small molecule binding	No
GO:0003674	molecular_function	No
GO:0097159	organic cyclic compound binding	No
GO:0032553	ribonucleotide binding	No
GO:0032555	purine ribonucleotide binding	No
GO:1901363	heterocyclic compound binding	No
GO:0043168	anion binding	No
GO:0140640	catalytic activity, acting on a nucleic acid	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 12	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	33.03	20.05	46.01
5d_25C	Five days - 25 degrees Celsius	30.26	18.32	42.20
7d_25C	Seven days - 25 degrees Celsius	31.35	18.98	43.73
10d_25C	Ten days - 25 degrees Celsius	34.54	21.03	48.06
7d_15C	Seven days - 15 degrees Celsius	33.53	20.11	46.96
7d_30C	Seven days - 30 degrees Celsius	29.50	17.79	41.20

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.767298	no
3d_25C	7d_25C	0.873025	no
3d_25C	7d_15C	0.967141	no
3d_25C	7d_30C	0.686157	no
3d_25C	10d_25C	0.892666	no
5d_25C	7d_25C	0.918559	no
5d_25C	7d_15C	0.729404	no
5d_25C	7d_30C	0.940031	no
5d_25C	10d_25C	0.636583	no
7d_25C	7d_15C	0.831130	no
7d_25C	7d_30C	0.845925	no
7d_25C	10d_25C	0.740943	no
7d_15C	7d_30C	0.641587	no
7d_15C	10d_25C	0.931534	no
7d_30C	10d_25C	0.549091	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g6251.t1 MSRNEMGPPAKRHKGFGHLPAGLRDAKRKDIDNWETNRMLTSGVAQRRDHEGDFMPEDEEATRVHLLVHDLRPPF LDGRTIFTKQLEPISAVRDPQSDMAVFSRKGSRVVNERRQQRERQKQAQEATNMAGTALGNFMGIKEDEGDSAVA VPIEDTYKGGGNKFARHMKKDGGSSAFSNSKTMREQREYLPAFAVREDLMRVIRDNQVVVVVGETGSGKTTQLTQ FLHEDGYSKFGMIGCTQPRRVAAMSVAKRVSEEMDVELGGLVGYAIRFEDCTSDDTLIKYMTDGVLLRESLTQKD LDKYSCIIMDEAHERALNTDVLMGLLKKVLTRRRDLKLIVTSATMNSERFSRFFGGAAEFVIPGRTFPVDLHFSR TPCEDYVDSAVKQVLAIHVSQGAGDILVFMTGQEDIEATCELVEERLKQLNDPPKLSVLPIYSQMPAEQQAKIFE KAAPGVRKVIVATNIAETSLTVDGIMFVVDAGYSKLKVYNPRMGMDSLQVTPISQANANQRSGRAGRTGPGKAYR LYTETAYKNELYIQTIPEIQRTSLANTILLLKSLGVKDLLDFDFMDPPPQETISTSLFELWSLGALDNLGDLTSL GRRMTPFPMDPPLAKLIIMASDVYECSEEMLTIVAMLSVANVFYRPKERQEEADSAHEKFFVPESDHLTLLHVYT QWKTNGHSDAWCIKHFLHSKTLRRAKEVRDQLHDIMIQQKMPLVSCGTDWDLIRKCICSGFFHQAAKLKGIGEFI NLRTSVTMALHPTSALYGIGQVPEYVVYHELILTSKEYMSTVTAVDPHWLAELGGVFYSVKEKGYSQRDRRVTEI EFNKRMEIEEQMAADRERAAAEKLREQERNDPARRRTEIEVGGKSVVRKAIIKPGRRVGGLTASSSSSSRPGANI DGAHDGGGNRPGSSVVKRPTVPRRPGRAF*
Coding	>Pro_DTO377G3_2\|g6251.t1 ATGTCTCGCAACGAGATGGGCCCTCCGGCCAAAAGGCACAAGGGCTTTGGACACCTCCCTGCAGGCCTGCGCGAC GCAAAACGGAAGGACATTGACAATTGGGAAACCAATCGAATGCTTACTTCTGGTGTAGCGCAACGACGAGACCAT GAGGGCGACTTCATGCCCGAAGATGAAGAAGCGACTCGCGTGCATTTACTCGTCCACGATCTCAGGCCGCCTTTT CTCGACGGTCGTACGATCTTCACGAAGCAACTGGAGCCGATCTCCGCTGTTCGAGATCCGCAAAGTGACATGGCG GTATTCAGTCGGAAAGGAAGCAGGGTCGTTAATGAGCGCCGGCAGCAGCGAGAACGACAAAAGCAAGCACAGGAG GCGACAAATATGGCCGGCACAGCTCTGGGGAACTTCATGGGCATCAAAGAGGACGAAGGAGACAGCGCTGTCGCT GTGCCCATCGAGGATACCTACAAAGGAGGAGGAAACAAATTTGCCAGACATATGAAGAAAGACGGTGGCTCTAGC GCTTTCAGCAATAGCAAGACCATGCGCGAACAGAGAGAGTATCTGCCCGCCTTTGCCGTGCGAGAGGATCTTATG AGAGTCATTCGGGATAACCAAGTTGTGGTGGTCGTTGGAGAGACCGGATCTGGGAAAACCACCCAGCTAACTCAA TTTCTACACGAGGATGGCTATTCTAAGTTCGGTATGATCGGATGCACGCAGCCTCGCCGTGTAGCTGCTATGAGT GTCGCTAAGCGAGTCAGCGAGGAGATGGACGTCGAGCTCGGTGGACTCGTCGGATACGCTATCCGTTTCGAGGAT TGTACGAGTGACGACACGTTGATCAAATACATGACGGATGGTGTATTGCTGCGAGAGTCTCTCACCCAAAAGGAT CTCGACAAATACTCATGTATCATTATGGACGAGGCACACGAAAGAGCCTTGAACACTGACGTCTTGATGGGTCTC CTTAAAAAAGTCCTGACCCGCCGCAGGGATCTGAAATTGATCGTGACCTCAGCAACAATGAACTCTGAACGATTT TCGCGCTTCTTTGGCGGTGCCGCAGAATTCGTCATTCCCGGCAGAACCTTCCCTGTTGATCTTCACTTCTCGCGC ACACCCTGTGAAGATTATGTCGATAGTGCGGTCAAGCAGGTCTTGGCCATTCATGTGTCTCAGGGCGCTGGTGAT ATTCTTGTCTTCATGACTGGCCAAGAAGATATCGAGGCAACCTGCGAGCTGGTTGAAGAAAGGCTGAAGCAGCTG AATGATCCGCCGAAACTCAGCGTTCTACCCATCTACAGTCAAATGCCGGCCGAGCAACAGGCAAAGATCTTTGAG AAGGCCGCCCCGGGCGTGCGCAAAGTAATTGTGGCTACAAATATTGCTGAGACAAGTCTAACGGTCGACGGTATC ATGTTCGTTGTGGATGCAGGTTACTCAAAGCTGAAAGTGTACAACCCGCGCATGGGTATGGACTCTCTCCAGGTC ACCCCGATTTCCCAAGCCAATGCAAACCAGCGATCTGGACGTGCTGGGCGGACTGGACCGGGCAAGGCCTATCGT CTATATACGGAAACAGCCTACAAGAACGAGCTTTACATTCAAACCATCCCTGAGATTCAGCGAACCAGTCTTGCC AATACCATACTGTTACTGAAATCCCTTGGTGTGAAGGACCTTTTGGACTTCGACTTCATGGATCCTCCCCCACAA GAGACAATCTCTACCTCTCTTTTCGAGCTCTGGTCGCTGGGTGCTCTGGACAACCTGGGTGATCTTACATCTCTA GGACGTCGCATGACACCATTCCCCATGGATCCCCCTCTTGCCAAGCTCATAATCATGGCCTCCGATGTATACGAG TGCAGCGAAGAAATGTTAACCATCGTCGCAATGCTTTCGGTTGCAAATGTCTTTTATCGTCCCAAAGAACGACAG GAGGAAGCCGATTCAGCCCACGAGAAATTCTTCGTTCCAGAATCCGATCACTTGACCCTTCTCCACGTTTATACT CAATGGAAAACCAACGGTCACTCAGATGCCTGGTGCATCAAGCACTTTTTGCACTCCAAAACGCTCCGCCGCGCC AAGGAAGTCCGAGACCAACTTCACGACATAATGATCCAACAAAAAATGCCCCTCGTCAGCTGCGGTACAGACTGG GACTTGATCCGCAAGTGCATCTGTTCGGGCTTCTTCCATCAAGCCGCAAAACTAAAGGGCATTGGCGAGTTCATT AACCTCCGCACCAGCGTGACTATGGCGCTCCATCCCACCAGTGCCCTTTACGGTATCGGCCAAGTGCCCGAGTAC GTCGTCTACCACGAGTTAATCCTGACGTCCAAGGAATACATGTCCACAGTGACAGCCGTTGACCCTCATTGGCTC GCCGAACTCGGTGGCGTATTCTACTCCGTTAAAGAAAAAGGCTACTCGCAGCGCGACCGCCGCGTGACAGAAATC GAGTTCAACAAGCGCATGGAAATCGAAGAGCAGATGGCAGCTGACCGTGAACGTGCTGCTGCCGAGAAATTGCGC GAGCAGGAACGCAACGACCCAGCCCGCCGCAGAACGGAAATCGAGGTTGGCGGAAAGTCCGTCGTGCGTAAAGCT ATCATCAAGCCAGGACGCAGGGTCGGCGGTTTGACTGCTTCATCTTCATCTTCCTCGCGACCTGGAGCCAATATC GATGGCGCTCATGATGGAGGTGGAAATCGTCCCGGAAGCAGTGTGGTCAAGAGGCCTACGGTGCCTCGGAGACCA GGACGTGCATTCTAG
Transcript	>Pro_DTO377G3_2\|g6251.t1 ATGTCTCGCAACGAGATGGGCCCTCCGGCCAAAAGGCACAAGGGCTTTGGACACCTCCCTGCAGGCCTGCGCGAC GCAAAACGGAAGGACATTGACAATTGGGAAACCAATCGAATGCTTACTTCTGGTGTAGCGCAACGACGAGACCAT GAGGGCGACTTCATGCCCGAAGATGAAGAAGCGACTCGCGTGCATTTACTCGTCCACGATCTCAGGCCGCCTTTT CTCGACGGTCGTACGATCTTCACGAAGCAACTGGAGCCGATCTCCGCTGTTCGAGATCCGCAAAGTGACATGGCG GTATTCAGTCGGAAAGGAAGCAGGGTCGTTAATGAGCGCCGGCAGCAGCGAGAACGACAAAAGCAAGCACAGGAG GCGACAAATATGGCCGGCACAGCTCTGGGGAACTTCATGGGCATCAAAGAGGACGAAGGAGACAGCGCTGTCGCT GTGCCCATCGAGGATACCTACAAAGGAGGAGGAAACAAATTTGCCAGACATATGAAGAAAGACGGTGGCTCTAGC GCTTTCAGCAATAGCAAGACCATGCGCGAACAGAGAGAGTATCTGCCCGCCTTTGCCGTGCGAGAGGATCTTATG AGAGTCATTCGGGATAACCAAGTTGTGGTGGTCGTTGGAGAGACCGGATCTGGGAAAACCACCCAGCTAACTCAA TTTCTACACGAGGATGGCTATTCTAAGTTCGGTATGATCGGATGCACGCAGCCTCGCCGTGTAGCTGCTATGAGT GTCGCTAAGCGAGTCAGCGAGGAGATGGACGTCGAGCTCGGTGGACTCGTCGGATACGCTATCCGTTTCGAGGAT TGTACGAGTGACGACACGTTGATCAAATACATGACGGATGGTGTATTGCTGCGAGAGTCTCTCACCCAAAAGGAT CTCGACAAATACTCATGTATCATTATGGACGAGGCACACGAAAGAGCCTTGAACACTGACGTCTTGATGGGTCTC CTTAAAAAAGTCCTGACCCGCCGCAGGGATCTGAAATTGATCGTGACCTCAGCAACAATGAACTCTGAACGATTT TCGCGCTTCTTTGGCGGTGCCGCAGAATTCGTCATTCCCGGCAGAACCTTCCCTGTTGATCTTCACTTCTCGCGC ACACCCTGTGAAGATTATGTCGATAGTGCGGTCAAGCAGGTCTTGGCCATTCATGTGTCTCAGGGCGCTGGTGAT ATTCTTGTCTTCATGACTGGCCAAGAAGATATCGAGGCAACCTGCGAGCTGGTTGAAGAAAGGCTGAAGCAGCTG AATGATCCGCCGAAACTCAGCGTTCTACCCATCTACAGTCAAATGCCGGCCGAGCAACAGGCAAAGATCTTTGAG AAGGCCGCCCCGGGCGTGCGCAAAGTAATTGTGGCTACAAATATTGCTGAGACAAGTCTAACGGTCGACGGTATC ATGTTCGTTGTGGATGCAGGTTACTCAAAGCTGAAAGTGTACAACCCGCGCATGGGTATGGACTCTCTCCAGGTC ACCCCGATTTCCCAAGCCAATGCAAACCAGCGATCTGGACGTGCTGGGCGGACTGGACCGGGCAAGGCCTATCGT CTATATACGGAAACAGCCTACAAGAACGAGCTTTACATTCAAACCATCCCTGAGATTCAGCGAACCAGTCTTGCC AATACCATACTGTTACTGAAATCCCTTGGTGTGAAGGACCTTTTGGACTTCGACTTCATGGATCCTCCCCCACAA GAGACAATCTCTACCTCTCTTTTCGAGCTCTGGTCGCTGGGTGCTCTGGACAACCTGGGTGATCTTACATCTCTA GGACGTCGCATGACACCATTCCCCATGGATCCCCCTCTTGCCAAGCTCATAATCATGGCCTCCGATGTATACGAG TGCAGCGAAGAAATGTTAACCATCGTCGCAATGCTTTCGGTTGCAAATGTCTTTTATCGTCCCAAAGAACGACAG GAGGAAGCCGATTCAGCCCACGAGAAATTCTTCGTTCCAGAATCCGATCACTTGACCCTTCTCCACGTTTATACT CAATGGAAAACCAACGGTCACTCAGATGCCTGGTGCATCAAGCACTTTTTGCACTCCAAAACGCTCCGCCGCGCC AAGGAAGTCCGAGACCAACTTCACGACATAATGATCCAACAAAAAATGCCCCTCGTCAGCTGCGGTACAGACTGG GACTTGATCCGCAAGTGCATCTGTTCGGGCTTCTTCCATCAAGCCGCAAAACTAAAGGGCATTGGCGAGTTCATT AACCTCCGCACCAGCGTGACTATGGCGCTCCATCCCACCAGTGCCCTTTACGGTATCGGCCAAGTGCCCGAGTAC GTCGTCTACCACGAGTTAATCCTGACGTCCAAGGAATACATGTCCACAGTGACAGCCGTTGACCCTCATTGGCTC GCCGAACTCGGTGGCGTATTCTACTCCGTTAAAGAAAAAGGCTACTCGCAGCGCGACCGCCGCGTGACAGAAATC GAGTTCAACAAGCGCATGGAAATCGAAGAGCAGATGGCAGCTGACCGTGAACGTGCTGCTGCCGAGAAATTGCGC GAGCAGGAACGCAACGACCCAGCCCGCCGCAGAACGGAAATCGAGGTTGGCGGAAAGTCCGTCGTGCGTAAAGCT ATCATCAAGCCAGGACGCAGGGTCGGCGGTTTGACTGCTTCATCTTCATCTTCCTCGCGACCTGGAGCCAATATC GATGGCGCTCATGATGGAGGTGGAAATCGTCCCGGAAGCAGTGTGGTCAAGAGGCCTACGGTGCCTCGGAGACCA GGACGTGCATTCTAG
Gene	>Pro_DTO377G3_2\|g6251.t1 ATGTCTCGCAACGAGATGGGCCCTCCGGCCAAAAGGCACAAGGGCTTTGGACACCTCCCTGCAGGCCTGCGCGAC GCAAAACGGAAGGACATTGACAATTGGGAAACCAATCGAATGCTTACTTCTGGTGTAGCGCAACGACGAGACCAT GAGGGCGACTTCATGCCCGAAGATGAAGAAGCGACTCGCGTGCATTTACTCGTCCACGATCTCAGGCCGCCTTTT CTCGACGGTCGTACGATCTTCACGAAGCAACTGGAGCCGATCTCCGCTGTTCGAGATCCGCAAAGTGACATGGCG GTATTCAGTCGGAAAGGAAGCAGGGTCGTTAATGAGCGCCGGCAGCAGCGAGAACGACAAAAGCAAGCACAGGAG GCGACAAATATGGCCGGCACAGCTCTGGGGAACTTCATGGGCATCAAAGAGGACGAAGGAGACAGCGCTGTCGCT GTGCCCATCGAGGATACCTACAAAGGAGGAGGAAACAAATTTGCCAGACATATGAAGAAAGACGGTGGCTCTAGC GCTTTCAGCAATAGCAAGACCATGCGCGAACAGAGAGAGTATCTGCCCGCCTTTGCCGTGCGAGAGGATCTTATG AGAGTCATTCGGGATAACCAAGTTGTGGTGGTCGTTGGAGAGACCGGATCTGGGAAAACCACCCAGCTAACTCAA TTTCTACACGAGGATGGCTATTCTAAGTTCGGTATGATCGGATGCACGCAGCCTCGCCGTGTAGCTGCTATGAGT GTCGCTAAGCGAGTCAGCGAGGAGATGGACGTCGAGCTCGGTGGACTCGTCGGATACGCTATCCGTTTCGAGGAT TGTACGAGTGACGACACGTTGATCAAATGTGAGTTTCTTCTTTCCGCTTTGGTGTGATCATATAGCTAATTTATG TACTAGACATGACGGATGGTGTATTGCTGCGAGAGTCTCTCACCCAAAAGGATCTCGACAAATACTCATGTATCA TTATGGACGAGGCACACGAAAGAGCCTTGAACACTGACGTCTTGATGGGTCTCCTTAAAAAAGTCCTGACCCGCC GCAGGGATCTGAAATTGATCGTGACCTCAGCAACAATGAACTCTGAACGATTTTCGCGCTTCTTTGGCGGTGCCG CAGAATTCGTCATTCCCGGCAGAACCTTCCCTGTTGATCTTCACTTCTCGCGCACACCCTGTGAAGATTATGTCG ATAGTGCGGTCAAGCAGGTCTTGGCCATTCATGTGTCTCAGGGCGCTGGTGATATTCTTGTCTTCATGACTGGCC AAGAAGATATCGAGGCAACCTGCGAGCTGGTTGAAGAAAGGCTGAAGCAGCTGAATGATCCGCCGAAACTCAGCG TTCTACCCATCTACAGTCAAATGCCGGCCGAGCAACAGGCAAAGATCTTTGAGAAGGCCGCCCCGGGCGTGCGCA AAGTAATTGTGGCTACAAATATTGCTGAGACAAGTCTAACGGTCGACGGTATCATGTTCGTTGTGGATGCAGGTT ACTCAAAGCTGAAAGTGTACAACCCGCGCATGGGTATGGACTCTCTCCAGGTCACCCCGATTTCCCAAGCCAATG CAAACCAGCGATCTGGACGTGCTGGGCGGACTGGACCGGGCAAGGCCTATCGTCTATATACGGAAACAGCCTACA AGAACGAGCTTTACATTCAAACCATCCCTGAGATTCAGCGAACCAGTCTTGCCAATACCATACTGTTACTGAAAT CCCTTGGTGTGAAGGACCTTTTGGACTTCGACTTCATGGATCCTCCCCCACAAGAGACAATCTCTACCTCTCTTT TCGAGCTCTGGTCGCTGGGTGCTCTGGACAACCTGGGTGATCTTACATCTCTAGGACGTCGCATGACACCATTCC CCATGGATCCCCCTCTTGCCAAGCTCATAATCATGGCCTCCGATGTATACGAGTGCAGCGAAGAAATGTTAACCA TCGTCGCAATGCTTTCGGTTGCAAATGTCTTTTATCGTCCCAAAGAACGACAGGAGGAAGCCGATTCAGCCCACG AGAAATTCTTCGTTCCAGAATCCGATCACTTGACCCTTCTCCACGTTTATACTCAATGGAAAACCAACGGTCACT CAGATGCCTGGTGCATCAAGCACTTTTTGCACTCCAAAACGCTCCGCCGCGCCAAGGAAGTCCGAGACCAACTTC ACGACATAATGATCCAACAAAAAATGCCCCTCGTCAGCTGCGGTACAGACTGGGACTTGATCCGCAAGTGCATCT GTTCGGGCTTCTTCCATCAAGCCGCAAAACTAAAGGGCATTGGCGAGTTCATTAACCTCCGCACCAGCGTGACTA TGGCGCTCCATCCCACCAGTGCCCTTTACGGTATCGGCCAAGTGCCCGAGTACGTCGTCTACCACGAGTTAATCC TGACGTCCAAGGAATACATGTCCACAGTGACAGCCGTTGACCCTCATGTAAGTTACCACTCCCCCATTCATGCCT GTTTGTCATCTAGTACTCAACTAACTCGTTTCTCTCAGTGGCTCGCCGAACTCGGTGGCGTATTCTACTCCGTTA AAGAAAAAGGCTACTCGCAGCGCGACCGCCGCGTGACAGAAATCGAGTTCAACAAGCGCATGGAAATCGAAGAGC AGATGGCAGCTGACCGTGAACGTGCTGCTGCCGAGAAATTGCGCGAGCAGGAACGCAACGACCCAGCCCGCCGCA GAACGGAAATCGAGGTTGGCGGAAAGTCCGTCGTGCGTAAAGCTATCATCAAGCCAGGACGCAGGGTCGGCGGTT TGACTGCTTCATCTTCATCTTCCTCGCGACCTGGAGCCAATATCGATGGCGCTCATGATGGAGGTGGAAATCGTC CCGGAAGCAGTGTGGTCAAGAGGCCTACGGTGCCTCGGAGACCAGGACGTGCATTCTAG

Fungal Genomics

General Properties

PFAM Domains

GO

SignalP

Transmembrane Domains

Transcription Factor Class

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Sequences