© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6244.t1 |
| Gene name | |
| Location | scaffold_16:315444..316830 |
| Strand | - |
| Gene length (bp) | 1386 |
| Transcript length (bp) | 1386 |
| Coding sequence length (bp) | 1386 |
| Protein length (aa) | 462 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03907 | Spo7 | Spo7-like protein | 2.9E-88 | 55 | 282 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0019888 | protein phosphatase regulator activity | Yes |
| GO:0030234 | enzyme regulator activity | No |
| GO:0098772 | molecular function regulator activity | No |
| GO:0019208 | phosphatase regulator activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 51 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 86 | 105 | 19 |
| 2 | 120 | 142 | 22 |
| 3 | 171 | 193 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 50.85 | 30.11 | 71.60 |
| 5d_25C | Five days - 25 degrees Celsius | 62.08 | 37.37 | 86.79 |
| 7d_25C | Seven days - 25 degrees Celsius | 60.01 | 35.89 | 84.13 |
| 10d_25C | Ten days - 25 degrees Celsius | 77.54 | 47.18 | 107.91 |
| 7d_15C | Seven days - 15 degrees Celsius | 52.57 | 31.10 | 74.04 |
| 7d_30C | Seven days - 30 degrees Celsius | 55.12 | 32.84 | 77.40 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.446381 | no |
| 3d_25C | 7d_25C | 0.543637 | no |
| 3d_25C | 7d_15C | 0.927220 | no |
| 3d_25C | 7d_30C | 0.803969 | no |
| 3d_25C | 10d_25C | 0.051079 | no |
| 5d_25C | 7d_25C | 0.923092 | no |
| 5d_25C | 7d_15C | 0.536795 | no |
| 5d_25C | 7d_30C | 0.679223 | no |
| 5d_25C | 10d_25C | 0.366829 | no |
| 7d_25C | 7d_15C | 0.641547 | no |
| 7d_25C | 7d_30C | 0.783393 | no |
| 7d_25C | 10d_25C | 0.282714 | no |
| 7d_15C | 7d_30C | 0.888109 | no |
| 7d_15C | 10d_25C | 0.075931 | no |
| 7d_30C | 10d_25C | 0.124180 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6244.t1 MASPLDQVVKGAPTPGASAPSTPEPLNSSRSSQAHRSDSSPPRPSTPDPLAHLPSSPPQIYLNLLILETSLRAQY LALRERRRQNTFFLLLLAAWLAHFAYALFLRPREDGRGVGGSVYWVVEMGEKVALLGGVVTALLIWGTGQWERGI RWPRRWLAVSNRGLRVMNTKIIIIRGPFWQELLSYISFLFPFSAPFLPSPNGNYHFVEQSPSDKRAGGGRQHYQQ YYNGTDSESGMVEEDLSPGGDYIRLLLLPKSFSPEFRENWDDYRTDFWEKENERRAQLRLKLRERERHLAQTEGG WLGRLGLGWRASQRRRLVAGTLHRSLEQESKHRPGHGHHPITKLGQEQRGPSRRNTRSESHSRTSSRSTTPVDTS FEDRPPSRSSPSSRPRRGSTASGQDASPQQQKRKGSTLRRGLSPLTQAQIREGIRTPSFSSDDSVLPMGMLEKDK EEAIPNSVPEL* |
| Coding | >Pro_DTO377G3_2|g6244.t1 ATGGCCTCACCCTTAGACCAGGTGGTCAAGGGTGCCCCAACACCCGGCGCGAGCGCCCCATCAACTCCAGAGCCG TTGAACTCCTCAAGGTCGTCTCAAGCTCACCGTTCAGATTCCTCCCCTCCACGTCCGTCGACCCCAGACCCGCTG GCACACCTGCCATCCTCCCCGCCCCAGATCTACCTAAACCTCTTAATACTTGAAACCTCGCTACGAGCCCAATAT CTGGCCCTGCGCGAGCGTCGCCGCCAGAACACGTTCTTCCTACTTCTACTAGCCGCTTGGCTTGCCCATTTTGCA TATGCCCTTTTCCTTCGCCCGCGAGAAGATGGCCGCGGGGTAGGCGGCTCTGTCTACTGGGTGGTAGAGATGGGG GAGAAAGTCGCCCTGCTTGGCGGGGTGGTTACCGCACTGCTCATCTGGGGTACAGGGCAGTGGGAACGAGGGATC AGATGGCCTCGGCGCTGGCTCGCTGTCTCCAATCGTGGCCTGCGCGTGATGAACACCAAGATAATTATCATTCGC GGCCCCTTCTGGCAAGAGCTACTGTCTTACATCTCATTCCTGTTCCCATTCTCCGCCCCGTTCTTACCCTCCCCC AATGGAAACTACCATTTCGTTGAGCAGAGCCCCTCCGATAAGCGCGCTGGTGGTGGTCGGCAGCACTATCAACAG TACTACAACGGCACCGACAGCGAGTCCGGCATGGTAGAAGAAGACCTCAGCCCGGGAGGCGACTACATTCGTCTC CTCCTCCTGCCCAAGTCGTTCTCCCCAGAATTCCGCGAAAACTGGGACGATTACCGCACTGACTTCTGGGAAAAG GAAAACGAGCGCCGCGCCCAGCTACGCCTCAAACTGCGCGAGCGCGAGCGCCACCTCGCCCAAACAGAAGGAGGC TGGCTCGGCCGGCTCGGGCTTGGCTGGCGCGCCTCCCAACGTCGCCGCCTCGTCGCAGGGACCCTGCACCGCTCA CTCGAGCAAGAATCAAAACACCGCCCAGGCCACGGCCATCATCCCATCACGAAACTCGGCCAAGAGCAGCGGGGT CCCTCCCGTCGCAATACCCGCTCCGAGTCTCATTCCCGCACGTCATCCCGCAGCACTACCCCCGTCGACACGAGC TTCGAAGACCGTCCCCCCTCCCGCTCTTCCCCTTCCAGTAGGCCCCGCCGCGGGAGCACCGCCTCCGGGCAGGAT GCGAGCCCGCAGCAGCAAAAACGGAAGGGCTCGACGCTTCGGCGGGGCTTGTCACCTCTCACGCAGGCGCAGATC AGAGAGGGTATACGTACCCCGTCCTTCTCGTCTGACGACTCTGTGTTGCCTATGGGTATGCTTGAGAAAGATAAA GAGGAGGCTATACCGAATTCTGTTCCGGAATTGTAA |
| Transcript | >Pro_DTO377G3_2|g6244.t1 ATGGCCTCACCCTTAGACCAGGTGGTCAAGGGTGCCCCAACACCCGGCGCGAGCGCCCCATCAACTCCAGAGCCG TTGAACTCCTCAAGGTCGTCTCAAGCTCACCGTTCAGATTCCTCCCCTCCACGTCCGTCGACCCCAGACCCGCTG GCACACCTGCCATCCTCCCCGCCCCAGATCTACCTAAACCTCTTAATACTTGAAACCTCGCTACGAGCCCAATAT CTGGCCCTGCGCGAGCGTCGCCGCCAGAACACGTTCTTCCTACTTCTACTAGCCGCTTGGCTTGCCCATTTTGCA TATGCCCTTTTCCTTCGCCCGCGAGAAGATGGCCGCGGGGTAGGCGGCTCTGTCTACTGGGTGGTAGAGATGGGG GAGAAAGTCGCCCTGCTTGGCGGGGTGGTTACCGCACTGCTCATCTGGGGTACAGGGCAGTGGGAACGAGGGATC AGATGGCCTCGGCGCTGGCTCGCTGTCTCCAATCGTGGCCTGCGCGTGATGAACACCAAGATAATTATCATTCGC GGCCCCTTCTGGCAAGAGCTACTGTCTTACATCTCATTCCTGTTCCCATTCTCCGCCCCGTTCTTACCCTCCCCC AATGGAAACTACCATTTCGTTGAGCAGAGCCCCTCCGATAAGCGCGCTGGTGGTGGTCGGCAGCACTATCAACAG TACTACAACGGCACCGACAGCGAGTCCGGCATGGTAGAAGAAGACCTCAGCCCGGGAGGCGACTACATTCGTCTC CTCCTCCTGCCCAAGTCGTTCTCCCCAGAATTCCGCGAAAACTGGGACGATTACCGCACTGACTTCTGGGAAAAG GAAAACGAGCGCCGCGCCCAGCTACGCCTCAAACTGCGCGAGCGCGAGCGCCACCTCGCCCAAACAGAAGGAGGC TGGCTCGGCCGGCTCGGGCTTGGCTGGCGCGCCTCCCAACGTCGCCGCCTCGTCGCAGGGACCCTGCACCGCTCA CTCGAGCAAGAATCAAAACACCGCCCAGGCCACGGCCATCATCCCATCACGAAACTCGGCCAAGAGCAGCGGGGT CCCTCCCGTCGCAATACCCGCTCCGAGTCTCATTCCCGCACGTCATCCCGCAGCACTACCCCCGTCGACACGAGC TTCGAAGACCGTCCCCCCTCCCGCTCTTCCCCTTCCAGTAGGCCCCGCCGCGGGAGCACCGCCTCCGGGCAGGAT GCGAGCCCGCAGCAGCAAAAACGGAAGGGCTCGACGCTTCGGCGGGGCTTGTCACCTCTCACGCAGGCGCAGATC AGAGAGGGTATACGTACCCCGTCCTTCTCGTCTGACGACTCTGTGTTGCCTATGGGTATGCTTGAGAAAGATAAA GAGGAGGCTATACCGAATTCTGTTCCGGAATTGTAA |
| Gene | >Pro_DTO377G3_2|g6244.t1 ATGGCCTCACCCTTAGACCAGGTGGTCAAGGGTGCCCCAACACCCGGCGCGAGCGCCCCATCAACTCCAGAGCCG TTGAACTCCTCAAGGTCGTCTCAAGCTCACCGTTCAGATTCCTCCCCTCCACGTCCGTCGACCCCAGACCCGCTG GCACACCTGCCATCCTCCCCGCCCCAGATCTACCTAAACCTCTTAATACTTGAAACCTCGCTACGAGCCCAATAT CTGGCCCTGCGCGAGCGTCGCCGCCAGAACACGTTCTTCCTACTTCTACTAGCCGCTTGGCTTGCCCATTTTGCA TATGCCCTTTTCCTTCGCCCGCGAGAAGATGGCCGCGGGGTAGGCGGCTCTGTCTACTGGGTGGTAGAGATGGGG GAGAAAGTCGCCCTGCTTGGCGGGGTGGTTACCGCACTGCTCATCTGGGGTACAGGGCAGTGGGAACGAGGGATC AGATGGCCTCGGCGCTGGCTCGCTGTCTCCAATCGTGGCCTGCGCGTGATGAACACCAAGATAATTATCATTCGC GGCCCCTTCTGGCAAGAGCTACTGTCTTACATCTCATTCCTGTTCCCATTCTCCGCCCCGTTCTTACCCTCCCCC AATGGAAACTACCATTTCGTTGAGCAGAGCCCCTCCGATAAGCGCGCTGGTGGTGGTCGGCAGCACTATCAACAG TACTACAACGGCACCGACAGCGAGTCCGGCATGGTAGAAGAAGACCTCAGCCCGGGAGGCGACTACATTCGTCTC CTCCTCCTGCCCAAGTCGTTCTCCCCAGAATTCCGCGAAAACTGGGACGATTACCGCACTGACTTCTGGGAAAAG GAAAACGAGCGCCGCGCCCAGCTACGCCTCAAACTGCGCGAGCGCGAGCGCCACCTCGCCCAAACAGAAGGAGGC TGGCTCGGCCGGCTCGGGCTTGGCTGGCGCGCCTCCCAACGTCGCCGCCTCGTCGCAGGGACCCTGCACCGCTCA CTCGAGCAAGAATCAAAACACCGCCCAGGCCACGGCCATCATCCCATCACGAAACTCGGCCAAGAGCAGCGGGGT CCCTCCCGTCGCAATACCCGCTCCGAGTCTCATTCCCGCACGTCATCCCGCAGCACTACCCCCGTCGACACGAGC TTCGAAGACCGTCCCCCCTCCCGCTCTTCCCCTTCCAGTAGGCCCCGCCGCGGGAGCACCGCCTCCGGGCAGGAT GCGAGCCCGCAGCAGCAAAAACGGAAGGGCTCGACGCTTCGGCGGGGCTTGTCACCTCTCACGCAGGCGCAGATC AGAGAGGGTATACGTACCCCGTCCTTCTCGTCTGACGACTCTGTGTTGCCTATGGGTATGCTTGAGAAAGATAAA GAGGAGGCTATACCGAATTCTGTTCCGGAATTGTAA |