© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6234.t1 |
| Gene name | |
| Location | scaffold_16:286038..287135 |
| Strand | + |
| Gene length (bp) | 1097 |
| Transcript length (bp) | 465 |
| Coding sequence length (bp) | 465 |
| Protein length (aa) | 155 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00240 | ubiquitin | Ubiquitin family | 7.9E-33 | 29 | 100 |
| PF01020 | Ribosomal_L40e | Ribosomal L40e family | 5.3E-30 | 104 | 153 |
| PF11976 | Rad60-SLD | Ubiquitin-2 like Rad60 SUMO-like | 1.6E-15 | 27 | 97 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005840 | ribosome | Yes |
| GO:0003735 | structural constituent of ribosome | Yes |
| GO:0006412 | translation | Yes |
| GO:0034645 | cellular macromolecule biosynthetic process | No |
| GO:0005488 | binding | No |
| GO:0008152 | metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0005198 | structural molecule activity | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:0008150 | biological_process | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0006518 | peptide metabolic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0043604 | amide biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043226 | organelle | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0043043 | peptide biosynthetic process | No |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0043229 | intracellular organelle | No |
| GO:0009058 | biosynthetic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1721.91 | 1003.74 | 2440.08 |
| 5d_25C | Five days - 25 degrees Celsius | 1535.50 | 903.12 | 2167.89 |
| 7d_25C | Seven days - 25 degrees Celsius | 1648.72 | 954.86 | 2342.57 |
| 10d_25C | Ten days - 25 degrees Celsius | 1592.87 | 935.54 | 2250.21 |
| 7d_15C | Seven days - 15 degrees Celsius | 1899.93 | 1092.10 | 2707.76 |
| 7d_30C | Seven days - 30 degrees Celsius | 1457.93 | 859.53 | 2056.34 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.698907 | no |
| 3d_25C | 7d_25C | 0.903628 | no |
| 3d_25C | 7d_15C | 0.751647 | no |
| 3d_25C | 7d_30C | 0.548003 | no |
| 3d_25C | 10d_25C | 0.806833 | no |
| 5d_25C | 7d_25C | 0.828771 | no |
| 5d_25C | 7d_15C | 0.415681 | no |
| 5d_25C | 7d_30C | 0.879861 | no |
| 5d_25C | 10d_25C | 0.917054 | no |
| 7d_25C | 7d_15C | 0.630613 | no |
| 7d_25C | 7d_30C | 0.683927 | no |
| 7d_25C | 10d_25C | 0.922694 | no |
| 7d_15C | 7d_30C | 0.287937 | no |
| 7d_15C | 10d_25C | 0.517140 | no |
| 7d_30C | 10d_25C | 0.775408 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6234.t1 MHYQVIIGCSAWNTATDSRQQRELATMQIFVKTLTGKTITLDVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQ LEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKFNCDKAICRKCYARLPPRATNCRKKKCGHTNQLRPK KKLK* |
| Coding | >Pro_DTO377G3_2|g6234.t1 ATGCACTACCAAGTTATCATTGGCTGCTCCGCCTGGAACACAGCGACCGACAGCCGACAACAACGAGAACTCGCA ACCATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTCGATGTCGAGTCGAGCGACACCATCGAC AACGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAACAGCGTCTGATCTTCGCCGGCAAGCAG CTCGAGGATGGCCGCACCCTGAGCGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTCCTGCGTCTCCGT GGTGGTATCATTGAGCCTTCCCTCAAGGCCCTTGCCTCCAAGTTCAACTGCGACAAGGCCATCTGCCGCAAGTGC TACGCTCGTCTTCCTCCCCGTGCCACCAACTGCCGCAAGAAGAAGTGCGGACACACCAACCAGCTCCGCCCCAAG AAGAAGCTCAAGTAA |
| Transcript | >Pro_DTO377G3_2|g6234.t1 ATGCACTACCAAGTTATCATTGGCTGCTCCGCCTGGAACACAGCGACCGACAGCCGACAACAACGAGAACTCGCA ACCATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTCGATGTCGAGTCGAGCGACACCATCGAC AACGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAACAGCGTCTGATCTTCGCCGGCAAGCAG CTCGAGGATGGCCGCACCCTGAGCGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTCCTGCGTCTCCGT GGTGGTATCATTGAGCCTTCCCTCAAGGCCCTTGCCTCCAAGTTCAACTGCGACAAGGCCATCTGCCGCAAGTGC TACGCTCGTCTTCCTCCCCGTGCCACCAACTGCCGCAAGAAGAAGTGCGGACACACCAACCAGCTCCGCCCCAAG AAGAAGCTCAAGTAA |
| Gene | >Pro_DTO377G3_2|g6234.t1 ATGCACTACCAAGTTATCATTGGCTGGTTGGTCGGGCTGCTTACATAACGTATGACGAAAATGGGCAACAACTAG GGCTTAGGGTACCCCGATCGGTCCACCTTTGCTAAGCGAGCGAAATCCTCAAATTGACAATCGACAGCTCCGCCT GGAACACAGCGACCGACAGCCGACAACAACGAGAACTCGCAACCAGTACGTCCCATAAACCTCGTGAAACAGCAT CCATGCATCGCTATGGATTCAGTGAGCTAACATCGTCTTTTTCCGCGCCGTTTCAGTGCAGATGTAGGTCTTTCT GAACCCTTAAATGTCATCGCGAACCACAATCCCGATCCCATCGCCAATACGACCCAAACCCATGGAGGAAAAATG AATATGGGCTAATACGGTGCGATGTAGTTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTCGATGTCGAGTC GAGCGACACCATCGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAACAGCGTCTGAT CTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATCCAGAAGGTAGGAACCGGAATTCA ACTTGTGATGTGATTTGGACCGAGAGCGGGGGGCATTGTGGTATCTCGGGTGGATCAGATTTCCAACATGTTCTT TTTTCAGAGATAAACTCTGTCCACGGATACGCAAGAGGAGGAATCATCGCTTTGCGTTATGGTCTATGGTCTGCG AAATGGTGGAACATTCGCTAACATGCGATATCAACCTGTTATAGGAGTCCACCCTTCACCTTGTCCTGCGTCTCC GTGGTGGTATCATTGAGCCTTCCCTCAAGGCCCTTGCCTCCAAGTTCAACTGCGACAAGGCCATCTGCCGCAAGT GCTACGTACGTTTACCCCGCCTTCTCCGCCTGCGCCAGATGATTGTCATGAAGAAATCGCCTTTAGTGGCAAGGC CATGAATTCCATGTACTAACTCGAACCTATTACAGGCTCGTCTTCCTCCCCGTGCCACCAACTGCCGCAAGAAGA AGTGCGGACACACCAACCAGCTCCGCCCCAAGAAGAAGCTCAAGTAA |