© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6224.t1 |
| Gene name | |
| Location | scaffold_16:266269..267347 |
| Strand | + |
| Gene length (bp) | 1078 |
| Transcript length (bp) | 936 |
| Coding sequence length (bp) | 936 |
| Protein length (aa) | 312 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08712 | Nfu_N | Scaffold protein Nfu/NifU N terminal | 2.5E-29 | 77 | 171 |
| PF01106 | NifU | NifU-like domain | 1.5E-27 | 206 | 272 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016226 | iron-sulfur cluster assembly | Yes |
| GO:0051536 | iron-sulfur cluster binding | Yes |
| GO:0005506 | iron ion binding | Yes |
| GO:0046914 | transition metal ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0043167 | ion binding | No |
| GO:0008150 | biological_process | No |
| GO:0031163 | metallo-sulfur cluster assembly | No |
| GO:0016043 | cellular component organization | No |
| GO:0008152 | metabolic process | No |
| GO:0051540 | metal cluster binding | No |
| GO:0005488 | binding | No |
| GO:0009987 | cellular process | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0003674 | molecular_function | No |
| GO:0006790 | sulfur compound metabolic process | No |
| GO:0022607 | cellular component assembly | No |
| GO:0043169 | cation binding | No |
| GO:0044237 | cellular metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 262.70 | 160.21 | 365.20 |
| 5d_25C | Five days - 25 degrees Celsius | 421.08 | 249.45 | 592.72 |
| 7d_25C | Seven days - 25 degrees Celsius | 473.35 | 277.96 | 668.75 |
| 10d_25C | Ten days - 25 degrees Celsius | 662.15 | 381.32 | 942.98 |
| 7d_15C | Seven days - 15 degrees Celsius | 457.01 | 264.26 | 649.76 |
| 7d_30C | Seven days - 30 degrees Celsius | 308.88 | 184.54 | 433.22 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.021670 | yes |
| 3d_25C | 7d_25C | 0.004450 | yes |
| 3d_25C | 7d_15C | 0.008133 | yes |
| 3d_25C | 7d_30C | 0.548893 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.686367 | no |
| 5d_25C | 7d_15C | 0.795644 | no |
| 5d_25C | 7d_30C | 0.191157 | no |
| 5d_25C | 10d_25C | 0.038966 | yes |
| 7d_25C | 7d_15C | 0.921381 | no |
| 7d_25C | 7d_30C | 0.057058 | no |
| 7d_25C | 10d_25C | 0.156120 | no |
| 7d_15C | 7d_30C | 0.090191 | no |
| 7d_15C | 10d_25C | 0.117487 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6224.t1 MFRRALLSSRLATPVECSARTIRPAFARYRYVSSAARLPTITASETRRRPTVRPHQQPASQGGVNGLSPTSKRTI FIQTENTPNPDALKFIPNHRVLPEDFPSTFLEYMTPRSTLAPPHPSPLAAKLLDVDGVTSVFYGTDFITVTKGSD ANWAHIKPEVFSIITQAVTSGETIVTTIEGAIGTEQESGEDSLAFNEDDDEVLSMIKELLETRIRPAIQEDGGDI ELRGFEGGIVMLKLRGACRTCDSSTVTLKNGIESMLMHYIEEVKGVEQVMDEEEIISMHEFSKFEEKLRQQKGAA ATASAPLDSAP* |
| Coding | >Pro_DTO377G3_2|g6224.t1 ATGTTCCGCCGCGCTCTGCTAAGCAGCCGTCTGGCCACTCCCGTCGAGTGCTCCGCCCGAACAATCAGACCGGCA TTCGCACGCTACAGATATGTGTCCAGCGCAGCCCGACTCCCGACCATCACAGCATCAGAGACCCGTCGCCGACCG ACAGTGCGACCGCACCAGCAGCCTGCCTCGCAGGGTGGAGTGAACGGCCTCTCGCCAACCAGCAAGCGCACCATC TTCATCCAAACCGAAAACACCCCCAACCCCGACGCCTTGAAGTTCATTCCTAACCACCGCGTCCTCCCGGAGGAC TTCCCCAGCACATTCCTCGAGTATATGACACCACGATCAACCCTTGCACCACCACACCCATCCCCGCTCGCCGCG AAACTGCTCGATGTCGACGGCGTCACATCCGTCTTTTATGGCACGGACTTTATCACAGTGACGAAAGGCAGCGAC GCGAATTGGGCGCATATTAAGCCCGAAGTCTTCAGCATCATCACGCAAGCTGTGACATCTGGCGAGACGATCGTG ACGACGATCGAGGGTGCCATCGGTACCGAGCAAGAGAGTGGCGAGGACTCGCTCGCCTTTAACGAGGATGATGAC GAGGTTCTCAGCATGATCAAGGAATTGCTCGAGACTCGGATCCGCCCCGCTATCCAAGAAGACGGTGGCGATATC GAATTGAGAGGGTTTGAGGGTGGTATTGTAATGCTGAAGCTGCGTGGTGCTTGTCGAACCTGCGATTCCAGCACG GTTACGCTCAAGAATGGTATTGAGTCTATGCTTATGCACTATATTGAGGAGGTCAAGGGTGTTGAGCAGGTTATG GATGAAGAGGAGATTATTTCCATGCATGAGTTCTCGAAGTTTGAGGAGAAGCTGCGCCAGCAGAAGGGTGCTGCT GCTACGGCTTCTGCGCCTTTGGACAGCGCGCCGTAA |
| Transcript | >Pro_DTO377G3_2|g6224.t1 ATGTTCCGCCGCGCTCTGCTAAGCAGCCGTCTGGCCACTCCCGTCGAGTGCTCCGCCCGAACAATCAGACCGGCA TTCGCACGCTACAGATATGTGTCCAGCGCAGCCCGACTCCCGACCATCACAGCATCAGAGACCCGTCGCCGACCG ACAGTGCGACCGCACCAGCAGCCTGCCTCGCAGGGTGGAGTGAACGGCCTCTCGCCAACCAGCAAGCGCACCATC TTCATCCAAACCGAAAACACCCCCAACCCCGACGCCTTGAAGTTCATTCCTAACCACCGCGTCCTCCCGGAGGAC TTCCCCAGCACATTCCTCGAGTATATGACACCACGATCAACCCTTGCACCACCACACCCATCCCCGCTCGCCGCG AAACTGCTCGATGTCGACGGCGTCACATCCGTCTTTTATGGCACGGACTTTATCACAGTGACGAAAGGCAGCGAC GCGAATTGGGCGCATATTAAGCCCGAAGTCTTCAGCATCATCACGCAAGCTGTGACATCTGGCGAGACGATCGTG ACGACGATCGAGGGTGCCATCGGTACCGAGCAAGAGAGTGGCGAGGACTCGCTCGCCTTTAACGAGGATGATGAC GAGGTTCTCAGCATGATCAAGGAATTGCTCGAGACTCGGATCCGCCCCGCTATCCAAGAAGACGGTGGCGATATC GAATTGAGAGGGTTTGAGGGTGGTATTGTAATGCTGAAGCTGCGTGGTGCTTGTCGAACCTGCGATTCCAGCACG GTTACGCTCAAGAATGGTATTGAGTCTATGCTTATGCACTATATTGAGGAGGTCAAGGGTGTTGAGCAGGTTATG GATGAAGAGGAGATTATTTCCATGCATGAGTTCTCGAAGTTTGAGGAGAAGCTGCGCCAGCAGAAGGGTGCTGCT GCTACGGCTTCTGCGCCTTTGGACAGCGCGCCGTAA |
| Gene | >Pro_DTO377G3_2|g6224.t1 ATGTTCCGCCGCGCTCTGCTAAGCAGCCGTCTGGCCACTCCCGTCGAGTGCTCCGCCCGAACAATCAGACCGGCA TTCGCACGCTACAGATATGTGTCCAGCGCAGCCCGACTCCCGACCATCACAGCATCAGAGACCCGTCGCCGACCG ACAGTGCGACCGCACCAGCAGCCTGCCTCGCAGGGTGGAGTGAACGGCCTCTCGCCAACCAGCAAGCGCACCATC TTCATCCAAACCGAAAACACCCCCAACCCCGACGTAAGCTCCCAAAGCTCAATTATCTCATCTTAACGAAAGAAA CCGAACTAACCTTTCATCTCCGATATTCCAGGCCTTGAAGTTCATTCCTAACCACCGCGTCCTCCCGGAGGACTT CCCCAGCACATTCCTCGAGTATATGACACCACGATCAACCCTTGCACCACCACACCCATCCCCGCTCGCCGCGAA ACTGCTCGATGTCGACGGCGTCACATCCGTCTTTTATGGCACGGACTTTATCACAGTGACGAAAGGCAGCGACGC GAATTGGGCGCATATTAAGCCCGAAGTCTTCAGCATCATCACGCAAGCTGTGACATCTGGCGAGACGATCGTGAC GACGATCGAGGGTGCCATCGGTACCGAGCAAGAGAGTGGCGAGGACTCGCTCGCCTTTAACGAGGATGATGACGA GGTTCTCAGCATGATCAAGGAATTGCTCGAGACTCGGATCCGCCCCGCTATCCAAGAAGACGGTGGCGATATCGA ATTGAGAGGGTTTGAGGGTGGTATTGTAATGCTGAAGCTGCGTGGTGCTTGTCGAACCTGCGATTCCAGCACGGT TACGCTCAAGAATGGTATTGAGTCTATGCTTATGCACTATGTATGTCCATCGACGCCTTCCCGTTCATTTTGTTT TGACATAAAGGCTGTTTGCTAACTTTGCTCTTAGATTGAGGAGGTCAAGGGTGTTGAGCAGGTTATGGATGAAGA GGAGATTATTTCCATGCATGAGTTCTCGAAGTTTGAGGAGAAGCTGCGCCAGCAGAAGGGTGCTGCTGCTACGGC TTCTGCGCCTTTGGACAGCGCGCCGTAA |