© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6224.t1 |
| Gene name | |
| Location | scaffold_16:266269..267347 |
| Strand | + |
| Gene length (bp) | 1078 |
| Transcript length (bp) | 936 |
| Coding sequence length (bp) | 936 |
| Protein length (aa) | 312 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08712 | Nfu_N | Scaffold protein Nfu/NifU N terminal | 2.5E-29 | 77 | 171 |
| PF01106 | NifU | NifU-like domain | 1.5E-27 | 206 | 272 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016226 | iron-sulfur cluster assembly | Yes |
| GO:0051536 | iron-sulfur cluster binding | Yes |
| GO:0005506 | iron ion binding | Yes |
| GO:0046914 | transition metal ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0043167 | ion binding | No |
| GO:0008150 | biological_process | No |
| GO:0031163 | metallo-sulfur cluster assembly | No |
| GO:0016043 | cellular component organization | No |
| GO:0008152 | metabolic process | No |
| GO:0051540 | metal cluster binding | No |
| GO:0005488 | binding | No |
| GO:0009987 | cellular process | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0003674 | molecular_function | No |
| GO:0006790 | sulfur compound metabolic process | No |
| GO:0022607 | cellular component assembly | No |
| GO:0043169 | cation binding | No |
| GO:0044237 | cellular metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6224.t1 MFRRALLSSRLATPVECSARTIRPAFARYRYVSSAARLPTITASETRRRPTVRPHQQPASQGGVNGLSPTSKRTI FIQTENTPNPDALKFIPNHRVLPEDFPSTFLEYMTPRSTLAPPHPSPLAAKLLDVDGVTSVFYGTDFITVTKGSD ANWAHIKPEVFSIITQAVTSGETIVTTIEGAIGTEQESGEDSLAFNEDDDEVLSMIKELLETRIRPAIQEDGGDI ELRGFEGGIVMLKLRGACRTCDSSTVTLKNGIESMLMHYIEEVKGVEQVMDEEEIISMHEFSKFEEKLRQQKGAA ATASAPLDSAP* |
| Coding | >Pro_DTO377G3_2|g6224.t1 ATGTTCCGCCGCGCTCTGCTAAGCAGCCGTCTGGCCACTCCCGTCGAGTGCTCCGCCCGAACAATCAGACCGGCA TTCGCACGCTACAGATATGTGTCCAGCGCAGCCCGACTCCCGACCATCACAGCATCAGAGACCCGTCGCCGACCG ACAGTGCGACCGCACCAGCAGCCTGCCTCGCAGGGTGGAGTGAACGGCCTCTCGCCAACCAGCAAGCGCACCATC TTCATCCAAACCGAAAACACCCCCAACCCCGACGCCTTGAAGTTCATTCCTAACCACCGCGTCCTCCCGGAGGAC TTCCCCAGCACATTCCTCGAGTATATGACACCACGATCAACCCTTGCACCACCACACCCATCCCCGCTCGCCGCG AAACTGCTCGATGTCGACGGCGTCACATCCGTCTTTTATGGCACGGACTTTATCACAGTGACGAAAGGCAGCGAC GCGAATTGGGCGCATATTAAGCCCGAAGTCTTCAGCATCATCACGCAAGCTGTGACATCTGGCGAGACGATCGTG ACGACGATCGAGGGTGCCATCGGTACCGAGCAAGAGAGTGGCGAGGACTCGCTCGCCTTTAACGAGGATGATGAC GAGGTTCTCAGCATGATCAAGGAATTGCTCGAGACTCGGATCCGCCCCGCTATCCAAGAAGACGGTGGCGATATC GAATTGAGAGGGTTTGAGGGTGGTATTGTAATGCTGAAGCTGCGTGGTGCTTGTCGAACCTGCGATTCCAGCACG GTTACGCTCAAGAATGGTATTGAGTCTATGCTTATGCACTATATTGAGGAGGTCAAGGGTGTTGAGCAGGTTATG GATGAAGAGGAGATTATTTCCATGCATGAGTTCTCGAAGTTTGAGGAGAAGCTGCGCCAGCAGAAGGGTGCTGCT GCTACGGCTTCTGCGCCTTTGGACAGCGCGCCGTAA |
| Transcript | >Pro_DTO377G3_2|g6224.t1 ATGTTCCGCCGCGCTCTGCTAAGCAGCCGTCTGGCCACTCCCGTCGAGTGCTCCGCCCGAACAATCAGACCGGCA TTCGCACGCTACAGATATGTGTCCAGCGCAGCCCGACTCCCGACCATCACAGCATCAGAGACCCGTCGCCGACCG ACAGTGCGACCGCACCAGCAGCCTGCCTCGCAGGGTGGAGTGAACGGCCTCTCGCCAACCAGCAAGCGCACCATC TTCATCCAAACCGAAAACACCCCCAACCCCGACGCCTTGAAGTTCATTCCTAACCACCGCGTCCTCCCGGAGGAC TTCCCCAGCACATTCCTCGAGTATATGACACCACGATCAACCCTTGCACCACCACACCCATCCCCGCTCGCCGCG AAACTGCTCGATGTCGACGGCGTCACATCCGTCTTTTATGGCACGGACTTTATCACAGTGACGAAAGGCAGCGAC GCGAATTGGGCGCATATTAAGCCCGAAGTCTTCAGCATCATCACGCAAGCTGTGACATCTGGCGAGACGATCGTG ACGACGATCGAGGGTGCCATCGGTACCGAGCAAGAGAGTGGCGAGGACTCGCTCGCCTTTAACGAGGATGATGAC GAGGTTCTCAGCATGATCAAGGAATTGCTCGAGACTCGGATCCGCCCCGCTATCCAAGAAGACGGTGGCGATATC GAATTGAGAGGGTTTGAGGGTGGTATTGTAATGCTGAAGCTGCGTGGTGCTTGTCGAACCTGCGATTCCAGCACG GTTACGCTCAAGAATGGTATTGAGTCTATGCTTATGCACTATATTGAGGAGGTCAAGGGTGTTGAGCAGGTTATG GATGAAGAGGAGATTATTTCCATGCATGAGTTCTCGAAGTTTGAGGAGAAGCTGCGCCAGCAGAAGGGTGCTGCT GCTACGGCTTCTGCGCCTTTGGACAGCGCGCCGTAA |
| Gene | >Pro_DTO377G3_2|g6224.t1 ATGTTCCGCCGCGCTCTGCTAAGCAGCCGTCTGGCCACTCCCGTCGAGTGCTCCGCCCGAACAATCAGACCGGCA TTCGCACGCTACAGATATGTGTCCAGCGCAGCCCGACTCCCGACCATCACAGCATCAGAGACCCGTCGCCGACCG ACAGTGCGACCGCACCAGCAGCCTGCCTCGCAGGGTGGAGTGAACGGCCTCTCGCCAACCAGCAAGCGCACCATC TTCATCCAAACCGAAAACACCCCCAACCCCGACGTAAGCTCCCAAAGCTCAATTATCTCATCTTAACGAAAGAAA CCGAACTAACCTTTCATCTCCGATATTCCAGGCCTTGAAGTTCATTCCTAACCACCGCGTCCTCCCGGAGGACTT CCCCAGCACATTCCTCGAGTATATGACACCACGATCAACCCTTGCACCACCACACCCATCCCCGCTCGCCGCGAA ACTGCTCGATGTCGACGGCGTCACATCCGTCTTTTATGGCACGGACTTTATCACAGTGACGAAAGGCAGCGACGC GAATTGGGCGCATATTAAGCCCGAAGTCTTCAGCATCATCACGCAAGCTGTGACATCTGGCGAGACGATCGTGAC GACGATCGAGGGTGCCATCGGTACCGAGCAAGAGAGTGGCGAGGACTCGCTCGCCTTTAACGAGGATGATGACGA GGTTCTCAGCATGATCAAGGAATTGCTCGAGACTCGGATCCGCCCCGCTATCCAAGAAGACGGTGGCGATATCGA ATTGAGAGGGTTTGAGGGTGGTATTGTAATGCTGAAGCTGCGTGGTGCTTGTCGAACCTGCGATTCCAGCACGGT TACGCTCAAGAATGGTATTGAGTCTATGCTTATGCACTATGTATGTCCATCGACGCCTTCCCGTTCATTTTGTTT TGACATAAAGGCTGTTTGCTAACTTTGCTCTTAGATTGAGGAGGTCAAGGGTGTTGAGCAGGTTATGGATGAAGA GGAGATTATTTCCATGCATGAGTTCTCGAAGTTTGAGGAGAAGCTGCGCCAGCAGAAGGGTGCTGCTGCTACGGC TTCTGCGCCTTTGGACAGCGCGCCGTAA |