© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g6206.t1 |
| Gene name | |
| Location | scaffold_16:227615..228425 |
| Strand | - |
| Gene length (bp) | 810 |
| Transcript length (bp) | 753 |
| Coding sequence length (bp) | 753 |
| Protein length (aa) | 251 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01670 | Glyco_hydro_12 | Glycosyl hydrolase family 12 | 8.5E-46 | 47 | 249 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000272 | polysaccharide catabolic process | Yes |
| GO:0008810 | cellulase activity | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0005976 | polysaccharide metabolic process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005975 | carbohydrate metabolic process | No |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0009057 | macromolecule catabolic process | No |
| GO:0009056 | catabolic process | No |
| GO:0016052 | carbohydrate catabolic process | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 22 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6206.t1 MKSFIAPVSLLCLGLSAMGNAARAPVKAIARRADFCDQWGTTTTDTYILYNNLWNEAQDPSGTQCTGLDSSSGSK IAWHTSWSWAGATNQVKSYASASLQFTPKTLSAISSIESVWDWSYSTTDIVADVAYDMFLSSTADGSEEYEIMVW LAALGGAGPISSTGKAIATVTINGVEWDVWVGPNGQMTVYSFVAKSTVTSFSGDLLKFFTYLVNDQGLSNSKYLI DVQAGTEPFTGTAKLTVSSYSVAVV* |
| Coding | >Pro_DTO377G3_2|g6206.t1 ATGAAGTCCTTCATCGCACCCGTGTCCCTCCTCTGCCTGGGACTGTCGGCCATGGGCAACGCCGCCAGGGCCCCA GTCAAGGCCATCGCTCGTCGCGCAGACTTCTGCGATCAGTGGGGCACAACCACAACGGACACCTACATCCTCTAC AACAACCTCTGGAACGAAGCCCAAGACCCCTCCGGCACGCAGTGCACAGGGCTAGACTCGAGCAGCGGCAGTAAG ATCGCGTGGCACACCTCGTGGTCGTGGGCCGGTGCCACGAACCAGGTCAAGAGCTACGCCAGTGCCTCGCTGCAG TTCACTCCTAAGACGCTGAGTGCTATTAGCAGCATCGAGTCCGTTTGGGACTGGAGCTACTCGACTACCGATATC GTCGCCGATGTCGCTTACGACATGTTTCTCAGTTCTACTGCTGACGGCAGCGAGGAGTACGAGATCATGGTGTGG CTTGCGGCTCTGGGCGGTGCGGGCCCGATCTCGAGCACTGGCAAGGCCATCGCGACGGTTACTATCAATGGTGTC GAATGGGATGTGTGGGTTGGTCCCAATGGCCAGATGACTGTTTACAGCTTCGTCGCCAAGTCGACCGTTACGAGC TTCTCCGGTGACCTGTTGAAGTTCTTTACGTACCTTGTCAACGACCAGGGTCTGAGCAACAGCAAATACTTGATT GATGTGCAGGCTGGCACTGAGCCTTTCACTGGTACTGCTAAGTTGACTGTTTCTTCTTACTCGGTCGCTGTTGTT TAA |
| Transcript | >Pro_DTO377G3_2|g6206.t1 ATGAAGTCCTTCATCGCACCCGTGTCCCTCCTCTGCCTGGGACTGTCGGCCATGGGCAACGCCGCCAGGGCCCCA GTCAAGGCCATCGCTCGTCGCGCAGACTTCTGCGATCAGTGGGGCACAACCACAACGGACACCTACATCCTCTAC AACAACCTCTGGAACGAAGCCCAAGACCCCTCCGGCACGCAGTGCACAGGGCTAGACTCGAGCAGCGGCAGTAAG ATCGCGTGGCACACCTCGTGGTCGTGGGCCGGTGCCACGAACCAGGTCAAGAGCTACGCCAGTGCCTCGCTGCAG TTCACTCCTAAGACGCTGAGTGCTATTAGCAGCATCGAGTCCGTTTGGGACTGGAGCTACTCGACTACCGATATC GTCGCCGATGTCGCTTACGACATGTTTCTCAGTTCTACTGCTGACGGCAGCGAGGAGTACGAGATCATGGTGTGG CTTGCGGCTCTGGGCGGTGCGGGCCCGATCTCGAGCACTGGCAAGGCCATCGCGACGGTTACTATCAATGGTGTC GAATGGGATGTGTGGGTTGGTCCCAATGGCCAGATGACTGTTTACAGCTTCGTCGCCAAGTCGACCGTTACGAGC TTCTCCGGTGACCTGTTGAAGTTCTTTACGTACCTTGTCAACGACCAGGGTCTGAGCAACAGCAAATACTTGATT GATGTGCAGGCTGGCACTGAGCCTTTCACTGGTACTGCTAAGTTGACTGTTTCTTCTTACTCGGTCGCTGTTGTT TAA |
| Gene | >Pro_DTO377G3_2|g6206.t1 ATGAAGTCCTTCATCGCACCCGTGTCCCTCCTCTGCCTGGGACTGTCGGCCATGGGCAACGCCGCCAGGGCCCCA GTCAAGGCCATCGCTCGTCGCGCAGACTTCTGCGATCAGTGGGGCACAACCACAACGGACACCTACATCCTCTAC AACAACCTCTGGAACGAAGCCCAAGACCCCTCCGGCACGCAGTGCACAGGGCTAGACTCGAGCAGCGGCAGTAAG ATCGCGTGGCACACCTCGTGGTCGTGGGCCGGTGCCACGAACCAGGTCAAGAGCTACGCCAGTGCCTCGCTGCAG TTCACTCCTAAGACGCTGAGTGCTATTAGCAGCATCGAGTCCGTTTGGGACTGGAGGTAAGCCTGGTGCACATGG TTTCTTTAGAACGAACAGCCCTAACCATCTCTGAATAGCTACTCGACTACCGATATCGTCGCCGATGTCGCTTAC GACATGTTTCTCAGTTCTACTGCTGACGGCAGCGAGGAGTACGAGATCATGGTGTGGCTTGCGGCTCTGGGCGGT GCGGGCCCGATCTCGAGCACTGGCAAGGCCATCGCGACGGTTACTATCAATGGTGTCGAATGGGATGTGTGGGTT GGTCCCAATGGCCAGATGACTGTTTACAGCTTCGTCGCCAAGTCGACCGTTACGAGCTTCTCCGGTGACCTGTTG AAGTTCTTTACGTACCTTGTCAACGACCAGGGTCTGAGCAACAGCAAATACTTGATTGATGTGCAGGCTGGCACT GAGCCTTTCACTGGTACTGCTAAGTTGACTGTTTCTTCTTACTCGGTCGCTGTTGTTTAA |