© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g620.t1 |
| Gene name | |
| Location | scaffold_01:1601658..1602111 |
| Strand | + |
| Gene length (bp) | 453 |
| Transcript length (bp) | 453 |
| Coding sequence length (bp) | 453 |
| Protein length (aa) | 151 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00137 | ATP-synt_C | ATP synthase subunit C | 6.0E-08 | 85 | 146 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:1902600 | proton transmembrane transport | Yes |
| GO:0015078 | proton transmembrane transporter activity | Yes |
| GO:0033177 | proton-transporting two-sector ATPase complex, proton-transporting domain | Yes |
| GO:0003674 | molecular_function | No |
| GO:0055085 | transmembrane transport | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0098655 | cation transmembrane transport | No |
| GO:0032991 | protein-containing complex | No |
| GO:0034220 | ion transmembrane transport | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0009987 | cellular process | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0098660 | inorganic ion transmembrane transport | No |
| GO:0006812 | cation transport | No |
| GO:0006811 | ion transport | No |
| GO:0098662 | inorganic cation transmembrane transport | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0098796 | membrane protein complex | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 90 | 112 | 22 |
| 2 | 122 | 144 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 3664.29 | 2043.95 | 5284.62 |
| 5d_25C | Five days - 25 degrees Celsius | 2376.51 | 1315.85 | 3437.17 |
| 7d_25C | Seven days - 25 degrees Celsius | 2036.95 | 1153.01 | 2920.88 |
| 10d_25C | Ten days - 25 degrees Celsius | 1346.00 | 775.16 | 1916.84 |
| 7d_15C | Seven days - 15 degrees Celsius | 2583.67 | 1416.73 | 3750.61 |
| 7d_30C | Seven days - 30 degrees Celsius | 1624.68 | 953.09 | 2296.27 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.071858 | no |
| 3d_25C | 7d_25C | 0.007779 | yes |
| 3d_25C | 7d_15C | 0.176783 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.607570 | no |
| 5d_25C | 7d_15C | 0.809956 | no |
| 5d_25C | 7d_30C | 0.107568 | no |
| 5d_25C | 10d_25C | 0.010735 | yes |
| 7d_25C | 7d_15C | 0.384708 | no |
| 7d_25C | 7d_30C | 0.385694 | no |
| 7d_25C | 10d_25C | 0.071695 | no |
| 7d_15C | 7d_30C | 0.041016 | yes |
| 7d_15C | 10d_25C | 0.003197 | yes |
| 7d_30C | 10d_25C | 0.486092 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g620.t1 MATSRVFASRMASVMAQTSKVARPAARFQLNAATKRTFTQKAPAFGAPKRIQSPTLLQAKAFQTAARRQYSSEVA SAMVEVSKNIGMGSAAIGLGGAGIGIGLVFAALLMSVSRNPALRGQLFSYAILGFAFVEAMGLFDLMVAMMCKYV * |
| Coding | >Pro_DTO377G3_2|g620.t1 ATGGCCACCTCTCGTGTCTTCGCCTCCCGCATGGCCTCGGTCATGGCCCAGACCTCCAAGGTCGCCCGCCCTGCT GCCCGCTTCCAGCTCAACGCTGCCACCAAGCGCACCTTCACCCAGAAGGCCCCCGCCTTCGGTGCCCCCAAGCGC ATCCAGTCGCCCACTCTCCTCCAGGCCAAGGCTTTCCAGACTGCCGCCCGCCGCCAGTACTCCTCCGAGGTCGCC TCCGCCATGGTTGAGGTCTCCAAGAACATCGGTATGGGTTCCGCCGCCATCGGTCTCGGTGGTGCCGGTATCGGT ATCGGTCTCGTCTTCGCCGCTCTCCTCATGAGTGTCTCCCGCAACCCTGCCCTCCGTGGCCAGCTCTTCTCCTAC GCCATTCTCGGCTTTGCCTTCGTCGAGGCCATGGGTCTCTTCGATCTCATGGTTGCCATGATGTGCAAGTACGTC TAA |
| Transcript | >Pro_DTO377G3_2|g620.t1 ATGGCCACCTCTCGTGTCTTCGCCTCCCGCATGGCCTCGGTCATGGCCCAGACCTCCAAGGTCGCCCGCCCTGCT GCCCGCTTCCAGCTCAACGCTGCCACCAAGCGCACCTTCACCCAGAAGGCCCCCGCCTTCGGTGCCCCCAAGCGC ATCCAGTCGCCCACTCTCCTCCAGGCCAAGGCTTTCCAGACTGCCGCCCGCCGCCAGTACTCCTCCGAGGTCGCC TCCGCCATGGTTGAGGTCTCCAAGAACATCGGTATGGGTTCCGCCGCCATCGGTCTCGGTGGTGCCGGTATCGGT ATCGGTCTCGTCTTCGCCGCTCTCCTCATGAGTGTCTCCCGCAACCCTGCCCTCCGTGGCCAGCTCTTCTCCTAC GCCATTCTCGGCTTTGCCTTCGTCGAGGCCATGGGTCTCTTCGATCTCATGGTTGCCATGATGTGCAAGTACGTC TAA |
| Gene | >Pro_DTO377G3_2|g620.t1 ATGGCCACCTCTCGTGTCTTCGCCTCCCGCATGGCCTCGGTCATGGCCCAGACCTCCAAGGTCGCCCGCCCTGCT GCCCGCTTCCAGCTCAACGCTGCCACCAAGCGCACCTTCACCCAGAAGGCCCCCGCCTTCGGTGCCCCCAAGCGC ATCCAGTCGCCCACTCTCCTCCAGGCCAAGGCTTTCCAGACTGCCGCCCGCCGCCAGTACTCCTCCGAGGTCGCC TCCGCCATGGTTGAGGTCTCCAAGAACATCGGTATGGGTTCCGCCGCCATCGGTCTCGGTGGTGCCGGTATCGGT ATCGGTCTCGTCTTCGCCGCTCTCCTCATGAGTGTCTCCCGCAACCCTGCCCTCCGTGGCCAGCTCTTCTCCTAC GCCATTCTCGGCTTTGCCTTCGTCGAGGCCATGGGTCTCTTCGATCTCATGGTTGCCATGATGTGCAAGTACGTC TAA |