© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g619.t1 |
| Gene name | |
| Location | scaffold_01:1595849..1598399 |
| Strand | + |
| Gene length (bp) | 2550 |
| Transcript length (bp) | 2445 |
| Coding sequence length (bp) | 2445 |
| Protein length (aa) | 815 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00916 | Sulfate_transp | Sulfate permease family | 2.4E-111 | 80 | 469 |
| PF01740 | STAS | STAS domain | 2.0E-08 | 562 | 680 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008272 | sulfate transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0015116 | sulfate transmembrane transporter activity | Yes |
| GO:0006810 | transport | No |
| GO:0008509 | anion transmembrane transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0006820 | anion transport | No |
| GO:0015698 | inorganic anion transport | No |
| GO:1901682 | sulfur compound transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0006811 | ion transport | No |
| GO:0072348 | sulfur compound transport | No |
| GO:0015103 | inorganic anion transmembrane transporter activity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 30 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 79 | 101 | 22 |
| 2 | 111 | 127 | 16 |
| 3 | 132 | 154 | 22 |
| 4 | 164 | 186 | 22 |
| 5 | 276 | 298 | 22 |
| 6 | 328 | 350 | 22 |
| 7 | 370 | 392 | 22 |
| 8 | 407 | 429 | 22 |
| 9 | 464 | 496 | 32 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1.38 | 0.20 | 2.55 |
| 5d_25C | Five days - 25 degrees Celsius | 1.32 | 0.28 | 2.35 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.61 | 0.24 | 2.97 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.01 | 0.12 | 1.91 |
| 7d_15C | Seven days - 15 degrees Celsius | 2.13 | 0.48 | 3.77 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.91 | 0.42 | 3.40 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.952506 | no |
| 3d_25C | 7d_25C | 0.817741 | no |
| 3d_25C | 7d_15C | 0.403010 | no |
| 3d_25C | 7d_30C | 0.561791 | no |
| 3d_25C | 10d_25C | 0.605508 | no |
| 5d_25C | 7d_25C | 0.743197 | no |
| 5d_25C | 7d_15C | 0.321984 | no |
| 5d_25C | 7d_30C | 0.472781 | no |
| 5d_25C | 10d_25C | 0.652987 | no |
| 7d_25C | 7d_15C | 0.612395 | no |
| 7d_25C | 7d_30C | 0.780266 | no |
| 7d_25C | 10d_25C | 0.371928 | no |
| 7d_15C | 7d_30C | 0.869230 | no |
| 7d_15C | 10d_25C | 0.100309 | no |
| 7d_30C | 10d_25C | 0.182639 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g619.t1 MAETISTRVGHAFAKLLRIDLSPIPSVVGDDTRTYGYYECEPTVGDWFRGHTPTAPQVRRYVWGLFPFLHWIGYY NVQWLIGDLVAGITVGAVVTPQGMAYAELAKLPPEYGLYSSFMGVLIYWFFATSKDITIGPVAVMSTLMGSIIIR VQAVHPEISPPVLASALAIICGAIVLFLGLLRLGFIVDFIPLPAITAFMTGSAINVCAGQVKTVLGEKAHFSTRG ATYKIIIDTLKHLPSARMDAAMGLTALAMLYGIRSACNYGTRKQPHKAKLFFFLSTLRTAFVVLFYTMISAAVNL HRRDHPAFKLLGNVPRGFKAAGVPKIDIPIIKAFLGELPAAVIVLLIEHIAISKSFGRVNNYTIDPSQEFIAIGI SNLLGPFLGAYPATGSFSRTAIKAKCGVRTPLAGVITAVVVLLAIYALPALFFFIPKSSLSAVIIHAVGDLVTPP RITYQFWRVSPIDALIFFMGVIVIIFSTIETGIYCTIAVSLAVLLFRLAKARGQFLGYIQVHSVVGDHILNASQG DPNTEFEDDTEGSRRIYLPTEHDGGTNPRIKIHQPAPGIFIYRVSEGFNYPNANHYTDHLVSHIFKATRRTNPQA WETTGDRPWNDPGPTRAERKLLLSEEAPTSPLPTLRAIILDFAAVNNVDVTSVQNLIDVRNQLDRWASPDSVQWH FANIHNKWTKRALAAAGFGFPTVSDGTGPRCQRSIFNVAEILDGGLPALVTQSQVGGLEEWSKDLEVGLNVQESS ASSVMDVTEDNIQVVQTGESTKVNTHRRRGRSGVGTCMAAVDGINRPFFHVDLTSALKSSMADS* |
| Coding | >Pro_DTO377G3_2|g619.t1 ATGGCGGAGACTATCTCGACTCGAGTCGGTCACGCTTTCGCAAAGCTTTTACGTATTGATTTGAGTCCAATTCCC TCGGTCGTCGGAGATGACACCAGGACTTATGGCTATTACGAGTGTGAGCCTACGGTGGGCGACTGGTTTCGAGGT CATACACCTACCGCTCCTCAAGTTCGTCGCTACGTTTGGGGCCTCTTTCCTTTCCTCCATTGGATCGGGTATTAC AACGTGCAATGGCTGATTGGGGATCTCGTGGCAGGCATTACTGTTGGCGCCGTGGTCACTCCACAGGGTATGGCA TACGCTGAGCTAGCCAAGCTGCCCCCAGAGTACGGTCTCTATTCTTCGTTCATGGGGGTCTTGATCTATTGGTTC TTCGCAACGTCCAAGGACATCACTATTGGGCCCGTGGCGGTCATGTCTACGCTCATGGGTTCAATCATCATCAGG GTTCAAGCAGTTCACCCCGAAATATCTCCACCGGTCCTTGCTTCCGCTCTGGCCATCATTTGCGGTGCGATCGTG TTATTCCTCGGATTGCTGCGTCTTGGCTTCATCGTCGACTTCATTCCCCTTCCTGCTATCACCGCTTTCATGACT GGGTCCGCCATCAATGTTTGTGCAGGTCAAGTGAAGACAGTCCTCGGGGAGAAAGCGCATTTCTCTACGCGTGGG GCAACCTATAAGATCATCATTGATACGCTGAAGCATCTCCCATCCGCTCGGATGGACGCTGCTATGGGTCTCACA GCGTTGGCAATGTTATATGGTATACGGTCTGCGTGCAACTACGGAACGAGGAAGCAGCCCCACAAGGCCAAGCTG TTCTTCTTTCTGTCGACATTGCGCACTGCCTTTGTCGTTCTCTTCTACACCATGATCAGCGCTGCGGTCAATCTC CATCGACGCGACCATCCTGCCTTCAAGCTACTCGGTAATGTCCCCCGCGGATTCAAGGCTGCAGGAGTTCCCAAA ATAGATATTCCAATTATCAAGGCATTTCTTGGTGAGCTCCCTGCGGCTGTGATTGTTCTGCTGATTGAGCATATT GCTATCTCGAAATCATTCGGTCGTGTCAACAACTATACCATTGACCCATCGCAGGAGTTTATTGCAATTGGCATA TCGAACCTACTCGGTCCGTTCTTGGGTGCATACCCAGCTACAGGTTCATTCTCCCGAACTGCTATCAAAGCAAAG TGCGGCGTACGAACTCCCCTCGCGGGTGTGATCACTGCCGTTGTCGTCCTTCTTGCCATTTATGCGCTGCCTGCC TTGTTCTTCTTCATTCCCAAATCGTCCTTGTCGGCCGTGATCATCCACGCAGTAGGAGATCTCGTTACACCGCCG CGTATCACCTATCAATTCTGGCGTGTATCTCCAATTGACGCACTCATCTTCTTCATGGGCGTTATCGTGATCATA TTCTCAACCATCGAGACCGGAATTTACTGCACAATCGCCGTCTCACTAGCAGTACTCCTTTTCCGACTTGCCAAA GCCCGGGGTCAATTCCTGGGATACATTCAGGTCCATTCAGTCGTGGGTGACCATATCCTCAACGCATCCCAGGGG GACCCAAACACAGAATTCGAAGATGATACCGAAGGATCTCGAAGAATCTACCTCCCAACCGAGCATGACGGTGGC ACAAACCCCCGAATCAAGATCCACCAGCCAGCCCCAGGAATCTTCATCTACAGAGTCTCCGAAGGATTCAACTAC CCCAATGCAAACCACTACACAGACCACCTAGTCAGCCACATCTTCAAAGCGACCCGGCGCACAAACCCACAAGCA TGGGAAACAACAGGCGACAGACCCTGGAACGACCCTGGTCCAACCCGCGCCGAACGCAAACTTCTTCTGTCGGAG GAAGCACCCACTTCCCCACTCCCAACTCTGCGCGCTATAATTCTCGATTTCGCCGCCGTCAACAACGTAGACGTC ACATCCGTGCAGAACCTCATCGACGTCCGCAACCAGCTTGACCGTTGGGCATCCCCAGACAGCGTGCAGTGGCAC TTTGCGAACATCCACAACAAATGGACGAAGCGTGCTCTCGCAGCCGCCGGCTTCGGGTTCCCCACCGTCTCAGAT GGGACAGGTCCTCGATGCCAGAGGTCGATCTTTAATGTTGCGGAGATATTGGATGGCGGACTACCTGCGTTAGTA ACTCAGTCTCAAGTCGGCGGGTTGGAGGAATGGTCAAAGGACTTGGAAGTTGGCCTGAATGTGCAGGAGAGCAGT GCCTCGTCGGTGATGGATGTCACTGAGGATAATATCCAGGTTGTGCAGACTGGTGAGAGTACGAAGGTTAATACC CATCGTCGTCGCGGTCGATCTGGTGTCGGTACTTGTATGGCGGCCGTTGATGGAATCAACCGGCCTTTCTTCCAT GTGGACCTGACTAGTGCTCTGAAGAGTTCTATGGCTGATTCTTAG |
| Transcript | >Pro_DTO377G3_2|g619.t1 ATGGCGGAGACTATCTCGACTCGAGTCGGTCACGCTTTCGCAAAGCTTTTACGTATTGATTTGAGTCCAATTCCC TCGGTCGTCGGAGATGACACCAGGACTTATGGCTATTACGAGTGTGAGCCTACGGTGGGCGACTGGTTTCGAGGT CATACACCTACCGCTCCTCAAGTTCGTCGCTACGTTTGGGGCCTCTTTCCTTTCCTCCATTGGATCGGGTATTAC AACGTGCAATGGCTGATTGGGGATCTCGTGGCAGGCATTACTGTTGGCGCCGTGGTCACTCCACAGGGTATGGCA TACGCTGAGCTAGCCAAGCTGCCCCCAGAGTACGGTCTCTATTCTTCGTTCATGGGGGTCTTGATCTATTGGTTC TTCGCAACGTCCAAGGACATCACTATTGGGCCCGTGGCGGTCATGTCTACGCTCATGGGTTCAATCATCATCAGG GTTCAAGCAGTTCACCCCGAAATATCTCCACCGGTCCTTGCTTCCGCTCTGGCCATCATTTGCGGTGCGATCGTG TTATTCCTCGGATTGCTGCGTCTTGGCTTCATCGTCGACTTCATTCCCCTTCCTGCTATCACCGCTTTCATGACT GGGTCCGCCATCAATGTTTGTGCAGGTCAAGTGAAGACAGTCCTCGGGGAGAAAGCGCATTTCTCTACGCGTGGG GCAACCTATAAGATCATCATTGATACGCTGAAGCATCTCCCATCCGCTCGGATGGACGCTGCTATGGGTCTCACA GCGTTGGCAATGTTATATGGTATACGGTCTGCGTGCAACTACGGAACGAGGAAGCAGCCCCACAAGGCCAAGCTG TTCTTCTTTCTGTCGACATTGCGCACTGCCTTTGTCGTTCTCTTCTACACCATGATCAGCGCTGCGGTCAATCTC CATCGACGCGACCATCCTGCCTTCAAGCTACTCGGTAATGTCCCCCGCGGATTCAAGGCTGCAGGAGTTCCCAAA ATAGATATTCCAATTATCAAGGCATTTCTTGGTGAGCTCCCTGCGGCTGTGATTGTTCTGCTGATTGAGCATATT GCTATCTCGAAATCATTCGGTCGTGTCAACAACTATACCATTGACCCATCGCAGGAGTTTATTGCAATTGGCATA TCGAACCTACTCGGTCCGTTCTTGGGTGCATACCCAGCTACAGGTTCATTCTCCCGAACTGCTATCAAAGCAAAG TGCGGCGTACGAACTCCCCTCGCGGGTGTGATCACTGCCGTTGTCGTCCTTCTTGCCATTTATGCGCTGCCTGCC TTGTTCTTCTTCATTCCCAAATCGTCCTTGTCGGCCGTGATCATCCACGCAGTAGGAGATCTCGTTACACCGCCG CGTATCACCTATCAATTCTGGCGTGTATCTCCAATTGACGCACTCATCTTCTTCATGGGCGTTATCGTGATCATA TTCTCAACCATCGAGACCGGAATTTACTGCACAATCGCCGTCTCACTAGCAGTACTCCTTTTCCGACTTGCCAAA GCCCGGGGTCAATTCCTGGGATACATTCAGGTCCATTCAGTCGTGGGTGACCATATCCTCAACGCATCCCAGGGG GACCCAAACACAGAATTCGAAGATGATACCGAAGGATCTCGAAGAATCTACCTCCCAACCGAGCATGACGGTGGC ACAAACCCCCGAATCAAGATCCACCAGCCAGCCCCAGGAATCTTCATCTACAGAGTCTCCGAAGGATTCAACTAC CCCAATGCAAACCACTACACAGACCACCTAGTCAGCCACATCTTCAAAGCGACCCGGCGCACAAACCCACAAGCA TGGGAAACAACAGGCGACAGACCCTGGAACGACCCTGGTCCAACCCGCGCCGAACGCAAACTTCTTCTGTCGGAG GAAGCACCCACTTCCCCACTCCCAACTCTGCGCGCTATAATTCTCGATTTCGCCGCCGTCAACAACGTAGACGTC ACATCCGTGCAGAACCTCATCGACGTCCGCAACCAGCTTGACCGTTGGGCATCCCCAGACAGCGTGCAGTGGCAC TTTGCGAACATCCACAACAAATGGACGAAGCGTGCTCTCGCAGCCGCCGGCTTCGGGTTCCCCACCGTCTCAGAT GGGACAGGTCCTCGATGCCAGAGGTCGATCTTTAATGTTGCGGAGATATTGGATGGCGGACTACCTGCGTTAGTA ACTCAGTCTCAAGTCGGCGGGTTGGAGGAATGGTCAAAGGACTTGGAAGTTGGCCTGAATGTGCAGGAGAGCAGT GCCTCGTCGGTGATGGATGTCACTGAGGATAATATCCAGGTTGTGCAGACTGGTGAGAGTACGAAGGTTAATACC CATCGTCGTCGCGGTCGATCTGGTGTCGGTACTTGTATGGCGGCCGTTGATGGAATCAACCGGCCTTTCTTCCAT GTGGACCTGACTAGTGCTCTGAAGAGTTCTATGGCTGATTCTTAG |
| Gene | >Pro_DTO377G3_2|g619.t1 ATGGCGGAGACTATCTCGACTCGAGTCGGTCACGCTTTCGCAAAGCTTTTACGTATTGATTTGAGTCCAATTCCC TCGGTCGTCGGAGATGACACCAGGACTTATGGCTATTACGAGTGTGAGCCTACGGTGGGCGACTGGTTTCGAGGT CATACACCTACCGCTCCTCAAGTTCGTCGCTACGTTTGGGGCCTCTTTCCTTTCCTCCATTGGATCGGGTATTAC AACGTGCAATGGCTGATTGGGGATCTCGTGGCAGGTGAGAAACTCCATTTGAATAGTCAAATACAGATACTAATC TGCAGCTCTTGACAGGCATTACTGTTGGCGCCGTGGTCACTCCACAGGGTATGGCATACGCTGAGCTAGCCAAGC TGCCCCCAGAGTACGGTCTCTATTCTTCGTTCATGGGGGTCTTGATCTATTGGTTCTTCGCAACGTCCAAGGACA TCACTATTGGGGTAGGATCAGTCCGTTCTTTCCTGGGAAACAAACACCTAACACTCTCAGCCCGTGGCGGTCATG TCTACGCTCATGGGTTCAATCATCATCAGGGTTCAAGCAGTTCACCCCGAAATATCTCCACCGGTCCTTGCTTCC GCTCTGGCCATCATTTGCGGTGCGATCGTGTTATTCCTCGGATTGCTGCGTCTTGGCTTCATCGTCGACTTCATT CCCCTTCCTGCTATCACCGCTTTCATGACTGGGTCCGCCATCAATGTTTGTGCAGGTCAAGTGAAGACAGTCCTC GGGGAGAAAGCGCATTTCTCTACGCGTGGGGCAACCTATAAGATCATCATTGATACGCTGAAGCATCTCCCATCC GCTCGGATGGACGCTGCTATGGGTCTCACAGCGTTGGCAATGTTATATGGTATACGGTCTGCGTGCAACTACGGA ACGAGGAAGCAGCCCCACAAGGCCAAGCTGTTCTTCTTTCTGTCGACATTGCGCACTGCCTTTGTCGTTCTCTTC TACACCATGATCAGCGCTGCGGTCAATCTCCATCGACGCGACCATCCTGCCTTCAAGCTACTCGGTAATGTCCCC CGCGGATTCAAGGCTGCAGGAGTTCCCAAAATAGATATTCCAATTATCAAGGCATTTCTTGGTGAGCTCCCTGCG GCTGTGATTGTTCTGCTGATTGAGCATATTGCTATCTCGAAATCATTCGGTCGTGTCAACAACTATACCATTGAC CCATCGCAGGAGTTTATTGCAATTGGCATATCGAACCTACTCGGTCCGTTCTTGGGTGCATACCCAGCTACAGGT TCATTCTCCCGAACTGCTATCAAAGCAAAGTGCGGCGTACGAACTCCCCTCGCGGGTGTGATCACTGCCGTTGTC GTCCTTCTTGCCATTTATGCGCTGCCTGCCTTGTTCTTCTTCATTCCCAAATCGTCCTTGTCGGCCGTGATCATC CACGCAGTAGGAGATCTCGTTACACCGCCGCGTATCACCTATCAATTCTGGCGTGTATCTCCAATTGACGCACTC ATCTTCTTCATGGGCGTTATCGTGATCATATTCTCAACCATCGAGACCGGAATTTACTGCACAATCGCCGTCTCA CTAGCAGTACTCCTTTTCCGACTTGCCAAAGCCCGGGGTCAATTCCTGGGATACATTCAGGTCCATTCAGTCGTG GGTGACCATATCCTCAACGCATCCCAGGGGGACCCAAACACAGAATTCGAAGATGATACCGAAGGATCTCGAAGA ATCTACCTCCCAACCGAGCATGACGGTGGCACAAACCCCCGAATCAAGATCCACCAGCCAGCCCCAGGAATCTTC ATCTACAGAGTCTCCGAAGGATTCAACTACCCCAATGCAAACCACTACACAGACCACCTAGTCAGCCACATCTTC AAAGCGACCCGGCGCACAAACCCACAAGCATGGGAAACAACAGGCGACAGACCCTGGAACGACCCTGGTCCAACC CGCGCCGAACGCAAACTTCTTCTGTCGGAGGAAGCACCCACTTCCCCACTCCCAACTCTGCGCGCTATAATTCTC GATTTCGCCGCCGTCAACAACGTAGACGTCACATCCGTGCAGAACCTCATCGACGTCCGCAACCAGCTTGACCGT TGGGCATCCCCAGACAGCGTGCAGTGGCACTTTGCGAACATCCACAACAAATGGACGAAGCGTGCTCTCGCAGCC GCCGGCTTCGGGTTCCCCACCGTCTCAGATGGGACAGGTCCTCGATGCCAGAGGTCGATCTTTAATGTTGCGGAG ATATTGGATGGCGGACTACCTGCGTTAGTAACTCAGTCTCAAGTCGGCGGGTTGGAGGAATGGTCAAAGGACTTG GAAGTTGGCCTGAATGTGCAGGAGAGCAGTGCCTCGTCGGTGATGGATGTCACTGAGGATAATATCCAGGTTGTG CAGACTGGTGAGAGTACGAAGGTTAATACCCATCGTCGTCGCGGTCGATCTGGTGTCGGTACTTGTATGGCGGCC GTTGATGGAATCAACCGGCCTTTCTTCCATGTGGACCTGACTAGTGCTCTGAAGAGTTCTATGGCTGATTCTTAG |